Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MICALL2	Gene	0	30.39	52.20	22.30	88.49	5.31	97.55	25.06
2	349486	Transcript	0	0	0	0	0	0	0	0
3	297508	Transcript	0	50.89	104.91	42.33	162.45	6.46	181.26	38.73
4	405088	Transcript	0	0	0	0	0	0	0	0
5	397069	Transcript	0	8.36	11.95	5.59	19.50	2.04	18.93	9.61
6	IG14_SR5	SilentIntergenicRegion	0	1.70	0.89	5.29	9.13	2.23	2.06	3.71
7	ER1a	ExonRegion	0	6.26	19.03	3.27	41.07	2.07	62.95	1.74
8	E1_Ab	KnownBoundary	0	2.37	23.54	2.43	38.69	0.00	55.77	1.59
9	ER1b	ExonRegion	0	28.46	93.87	17.85	115.58	5.01	151.48	15.12
10	E1_Da	KnownBoundary	0	95.25	161.33	57.45	180.89	10.70	265.77	44.01
11	E1a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1c	ExonRegion	0	71.80	159.92	50.70	177.26	9.65	217.78	47.49
13	E1b_E2a	KnownJunction	0	36.77	141.34	36.99	131.50	5.69	173.96	42.22
14	E2_Aa	NovelBoundary	1	13.82	30.74	10.85	57.97	0.00	79.25	2.34
15	ER2a	ExonRegion	0	41.62	115.21	45.65	168.70	6.50	198.91	42.51
16	E2_Da	NovelBoundary	1	10.05	15.61	4.02	1.54	0.00	2.65	1.48
17	E2a_E3a	KnownJunction	0	46.30	103.38	49.72	172.22	7.72	215.04	33.81
18	E2a_E6a	NovelJunction	1	0.00	0.00	0.00	3.12	0.00	8.42	0.00
19	I2	Intron	1	13.18	21.33	4.93	6.17	1.67	4.88	4.61
20	I2_AR1	ActiveIntronRegion	1	15.68	30.63	5.65	8.24	2.27	5.78	4.29
21	ER3a	ExonRegion	0	68.42	117.08	53.13	203.85	8.53	246.30	48.15
22	E3a_E4a	KnownJunction	0	46.55	106.11	40.28	128.79	3.18	163.37	32.55
23	E4_Aa	NovelBoundary	1	18.98	10.22	12.65	16.99	1.08	18.04	3.00
24	ER4a	ExonRegion	0	46.32	99.09	37.54	156.83	4.82	174.05	34.06
25	E4a_E5a	KnownJunction	0	56.61	76.66	37.15	146.64	4.36	147.83	37.82
26	ER5a	ExonRegion	0	40.01	84.44	33.88	146.85	5.75	146.32	34.35
27	E5a_E6a	KnownJunction	0	51.54	64.05	42.15	183.35	7.70	140.70	36.67
28	E6_Aa	NovelBoundary	0	9.36	8.33	6.16	15.58	0.00	4.23	7.81
29	ER6a	ExonRegion	0	53.88	86.70	38.42	170.93	7.15	169.62	36.42
30	E6_Ab	KnownBoundary	0	51.17	94.08	38.70	152.69	0.85	191.83	30.64
31	ER6b	ExonRegion	0	42.47	79.24	30.82	147.45	5.30	149.74	34.53
32	E6a_E7a	KnownJunction	0	34.98	112.86	36.53	181.70	3.90	213.00	49.03
33	E6a_E8a	NovelJunction	1	0.00	0.00	0.00	3.25	0.00	14.63	0.00
34	ER7a	ExonRegion	0	56.94	106.35	52.07	187.76	10.01	202.81	52.51
35	E7_Da	NovelBoundary	0	10.43	9.20	3.39	0.00	2.01	4.40	7.88
36	E7a_E8a	KnownJunction	0	92.06	63.45	69.83	202.29	11.37	185.48	58.19
37	ER8a	ExonRegion	0	79.72	82.57	55.49	201.99	10.79	202.46	49.36
38	E8a_E9a	KnownJunction	0	58.77	77.55	48.51	179.53	7.84	168.03	38.64
39	E8a_E10b	NovelJunction	1	0.00	0.00	0.00	10.73	0.00	7.58	0.00
40	E8a_E10c	NovelJunction	1	0.00	0.00	0.62	4.06	0.00	12.41	0.00
41	ER9a	ExonRegion	0	63.72	62.15	41.22	126.93	7.41	134.48	37.32
42	E9a_E10b	KnownJunction	0	35.58	43.98	25.55	100.02	5.53	84.47	20.92
43	I9_AR1	ActiveIntronRegion	0	1.41	11.37	2.64	2.95	1.26	3.75	4.74
44	E10_Aa	NovelBoundary	1	28.21	21.60	13.54	37.20	25.40	30.31	69.74
45	ER10a	ExonRegion	0	13.43	12.67	10.44	13.21	7.44	13.33	24.69
46	E10_Ab	KnownBoundary	0	6.49	2.31	3.54	9.16	3.32	6.75	9.33
47	ER10b	ExonRegion	0	27.72	61.09	20.68	109.27	7.23	96.81	26.63
48	E10_Da	KnownBoundary	0	10.61	5.60	5.76	10.21	6.52	7.34	6.52
49	E10a_E10c	KnownJunction	0	43.81	63.10	26.30	115.14	5.19	119.37	31.97
50	ER10c	ExonRegion	0	5.87	7.55	4.58	8.13	2.33	9.35	6.67
51	E10_Ac	KnownBoundary	0	18.89	5.44	10.49	12.11	0.00	7.13	11.08
52	ER10d	ExonRegion	0	41.14	71.45	29.42	127.42	6.74	140.78	34.55
53	E10_Db	KnownBoundary	0	4.64	13.61	5.02	17.80	2.35	13.21	4.41
54	E10b_E10d	KnownJunction	0	26.47	67.47	23.41	89.54	5.58	132.61	20.16
55	ER10e	ExonRegion	0	5.84	17.06	7.72	22.92	1.36	20.58	5.46
56	E10_Ad	KnownBoundary	0	7.29	12.22	6.12	25.82	2.67	23.66	7.68
57	ER10f	ExonRegion	0	28.44	59.13	21.46	116.48	5.86	138.58	22.12
58	E10_Dc	KnownBoundary	0	5.81	2.15	1.58	6.26	0.00	8.79	4.00
59	E10c_E10e	KnownJunction	0	39.29	48.81	35.95	86.07	7.61	110.17	31.24
60	E10c_E11a	NovelJunction	1	2.44	1.63	2.46	14.20	0.00	15.33	2.29
61	E10c_E11b	NovelJunction	0	0.00	2.73	0.00	9.08	0.00	2.89	0.00
62	E10c_E14a	NovelJunction	1	1.03	0.00	0.00	9.78	0.00	1.39	1.61
63	ER10g	ExonRegion	0	3.13	6.53	1.31	5.96	0.08	10.35	2.49
64	E10_Ae	KnownBoundary	0	3.14	2.42	1.26	6.29	0.00	7.18	5.35
65	ER10h	ExonRegion	0	45.73	52.48	33.59	97.42	13.36	138.27	33.64
66	E10d_E11a	KnownJunction	0	46.10	54.38	32.62	109.01	13.88	132.71	24.62
67	ER11a	ExonRegion	0	42.43	68.21	30.13	116.30	12.75	146.09	31.74
68	E11_Da	KnownBoundary	0	9.90	15.92	9.07	41.31	0.00	23.37	5.32
69	E11a_E11b	KnownJunction	0	32.24	62.97	29.96	90.16	4.61	148.93	30.58
70	ER11b	ExonRegion	0	19.77	20.20	9.03	24.49	3.04	15.18	15.86
71	E11_Ab	KnownBoundary	0	9.21	15.47	6.37	23.52	5.53	5.68	5.33
72	ER11c	ExonRegion	0	33.85	74.14	29.83	130.94	9.45	168.51	32.62
73	E11b_E12a	KnownJunction	0	26.09	53.49	25.82	96.55	9.13	76.62	27.23
74	E11b_E13a	NovelJunction	1	0.00	9.43	0.76	26.60	0.00	53.22	0.69
75	E11b_E14a	KnownJunction	1	0.00	4.62	0.52	19.61	0.00	6.03	2.34
76	ER12a	ExonRegion	0	29.28	60.51	26.39	90.76	6.53	94.87	25.63
77	E12a_E13a	KnownJunction	0	28.09	62.66	26.99	71.47	7.31	98.19	22.80
78	I12	Intron	0	4.54	13.39	3.24	7.30	1.14	6.62	3.15
79	I12_AR1	ActiveIntronRegion	0	4.55	13.42	3.24	7.32	1.14	6.64	3.16
80	E13_Aa	NovelBoundary	0	4.91	17.81	5.23	10.05	0.97	6.46	9.42
81	ER13a	ExonRegion	0	22.43	47.40	15.82	59.10	4.26	87.01	16.58
82	ER13b	ExonRegion	0	1.54	8.10	1.92	4.99	0.00	1.23	2.36
83	I13_SR2	SilentIntronRegion	1	7.50	6.05	0.68	15.09	0.00	29.01	5.09
84	I13_AR3	ActiveIntronRegion	1	4.48	3.83	1.63	12.16	0.03	22.42	5.11
85	E14_Aa	NovelBoundary	1	2.55	10.56	2.77	9.73	0.00	49.45	13.11
86	ER14a	ExonRegion	1	10.49	15.01	5.53	42.21	0.00	57.68	9.80