Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DNAH11	Gene	0	0.56	1.25	0.79	0.19	8.59	0.28	0.08
2	409508	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	328843	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.05	0.00
4	IG7_AR1	ActiveIntergenicRegion	0	4.33	7.53	4.90	5.62	12.84	11.45	1.52
5	ER1a	ExonRegion	0	0.10	6.69	0.39	0.74	4.44	0.49	0.00
6	E1a_E2a	KnownJunction	0	0.00	3.26	0.50	0.00	6.32	0.00	0.00
7	ER2a	ExonRegion	0	0.55	6.03	0.84	0.00	15.54	0.00	0.00
8	E2a_E3a	KnownJunction	0	1.50	4.05	0.78	0.00	18.44	0.00	0.00
9	ER3a	ExonRegion	0	1.32	9.39	0.83	0.48	20.95	0.00	0.00
10	E3a_E4a	KnownJunction	0	1.27	8.41	0.89	0.00	36.52	0.00	0.00
11	ER4a	ExonRegion	0	0.74	6.66	0.36	0.50	29.85	0.98	0.00
12	E4a_E5a	KnownJunction	0	3.04	6.44	1.55	0.00	34.07	0.00	0.00
13	ER5a	ExonRegion	0	1.05	8.21	0.79	0.00	42.07	1.86	0.00
14	E5a_E6a	KnownJunction	0	0.00	6.83	0.80	0.00	28.77	0.00	0.00
15	ER6a	ExonRegion	0	0.53	3.81	0.76	0.00	19.15	0.44	0.00
16	E6a_E7a	KnownJunction	0	0.00	1.44	0.89	0.00	14.59	0.00	0.00
17	ER7a	ExonRegion	0	0.18	0.94	1.09	0.00	13.20	0.81	0.00
18	E7a_E8a	KnownJunction	0	0.90	0.00	1.44	0.00	5.42	0.00	0.00
19	ER8a	ExonRegion	0	0.44	0.53	0.40	0.00	6.57	0.00	0.00
20	E8a_E9a	KnownJunction	0	0.00	0.00	0.73	0.00	4.52	0.00	0.00
21	ER9a	ExonRegion	0	0.01	0.00	0.12	0.00	7.50	0.00	0.00
22	E9a_E10a	KnownJunction	0	0.00	0.00	0.66	0.00	9.75	0.00	0.00
23	ER10a	ExonRegion	0	0.00	1.58	0.00	0.00	6.71	0.00	0.00
24	E10a_E11a	KnownJunction	0	0.00	1.52	0.00	0.00	9.66	0.00	0.00
25	ER11a	ExonRegion	0	0.33	1.91	0.00	0.00	8.76	0.00	0.00
26	E11a_E12a	KnownJunction	0	0.90	0.00	0.00	0.00	7.84	0.00	0.00
27	ER12a	ExonRegion	0	0.69	0.02	0.39	0.00	10.47	0.00	0.26
28	E12a_E13a	KnownJunction	0	0.00	0.00	0.89	0.00	10.17	0.00	0.00
29	ER13a	ExonRegion	0	0.56	1.61	0.73	0.00	7.00	0.00	0.31
30	E13a_E14a	KnownJunction	0	0.00	1.16	0.00	0.00	6.39	0.00	0.85
31	ER14a	ExonRegion	0	0.69	0.29	0.92	0.16	8.10	0.95	0.05
32	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	1.54	16.11	0.00	0.00
33	ER15a	ExonRegion	0	0.70	1.37	0.97	0.38	10.71	0.56	0.00
34	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	9.27	0.00	0.00
35	ER16a	ExonRegion	0	0.15	0.45	0.42	0.00	12.25	0.73	0.00
36	E16a_E17a	KnownJunction	0	0.97	3.13	0.00	0.00	14.68	0.00	0.00
37	ER17a	ExonRegion	0	0.47	1.39	0.61	0.00	15.49	1.64	0.00
38	E17a_E18a	KnownJunction	0	0.00	1.18	0.00	0.00	12.40	0.00	0.00
39	ER18a	ExonRegion	0	0.05	3.07	0.84	0.00	10.61	0.43	0.32
40	E18a_E19a	KnownJunction	0	0.77	1.29	1.57	0.00	11.80	0.00	0.86
41	ER19a	ExonRegion	0	0.60	4.88	0.76	0.00	13.49	0.76	0.27
42	E19a_E20a	KnownJunction	0	1.02	2.65	1.45	0.00	13.19	0.00	0.00
43	ER20a	ExonRegion	0	0.95	2.14	1.81	0.00	10.97	0.00	0.00
44	E20a_E21a	KnownJunction	0	0.75	2.71	0.65	0.00	8.55	0.00	0.00
45	ER21a	ExonRegion	0	0.43	0.33	0.71	1.19	12.60	0.00	0.00
46	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	13.81	0.00	0.00
47	ER22a	ExonRegion	0	0.00	0.00	0.35	0.00	7.33	0.00	0.00
48	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER23a	ExonRegion	0	0.00	1.16	0.00	0.00	8.13	0.00	0.00
50	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	6.32	0.00	0.00
51	ER24a	ExonRegion	0	1.14	0.36	0.37	0.00	7.79	0.37	0.00
52	E24a_E25a	KnownJunction	0	2.32	1.63	0.57	0.00	8.51	1.66	0.00
53	ER25a	ExonRegion	0	0.74	1.65	0.31	0.00	7.71	0.39	0.00
54	E25a_E26a	KnownJunction	0	2.07	1.37	0.85	0.00	9.89	0.00	0.00
55	ER26a	ExonRegion	0	1.72	0.93	1.01	0.42	8.53	0.00	0.34
56	E26a_E27a	KnownJunction	0	1.03	0.00	2.31	0.00	14.13	0.00	0.89
57	ER27a	ExonRegion	0	1.52	0.41	1.27	0.87	12.80	0.00	0.29
58	E27a_E28a	KnownJunction	0	0.00	1.63	1.24	1.16	9.22	0.00	0.00
59	ER28a	ExonRegion	0	0.46	1.55	1.07	0.12	10.99	0.00	0.00
60	E28a_E29a	KnownJunction	0	0.00	1.63	0.00	0.00	6.16	0.00	0.00
61	ER29a	ExonRegion	0	0.38	0.90	0.34	0.00	6.00	0.00	0.00
62	E29a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	4.56	0.00	0.00
63	ER30a	ExonRegion	0	0.34	0.00	0.22	0.00	4.14	1.19	0.64
64	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	9.61	0.00	0.00
65	ER31a	ExonRegion	0	0.00	0.70	0.00	0.00	4.08	0.00	0.03
66	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	E31a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	E32a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER32a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.20	0.00
70	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER33a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER34a	ExonRegion	0	0.34	0.85	0.16	0.59	3.86	0.55	0.00
73	E34a_E35a	KnownJunction	0	0.60	1.63	0.89	0.00	5.35	0.00	0.00
74	ER35a	ExonRegion	0	0.02	1.18	0.25	1.21	3.76	0.59	0.00
75	E35a_E36a	KnownJunction	0	0.00	2.65	0.73	0.00	5.14	0.00	0.00
76	ER36a	ExonRegion	0	0.00	1.28	0.69	0.65	2.23	0.00	0.00
77	E36a_E37a	KnownJunction	0	0.00	1.63	0.69	0.00	1.18	0.00	0.00
78	ER37a	ExonRegion	0	0.00	0.38	0.20	0.00	2.16	0.00	0.00
79	E37a_E38a	KnownJunction	0	0.00	0.00	0.00	0.00	1.96	0.00	0.00
80	ER38a	ExonRegion	0	0.00	0.00	0.25	0.00	3.17	0.67	0.00
81	E38a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	1.84	0.00	0.00
82	ER39a	ExonRegion	0	0.00	0.00	0.00	0.00	1.72	0.00	0.00
83	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	0.00	2.10	0.00	0.00
84	ER40a	ExonRegion	0	0.00	0.00	0.00	0.00	3.37	0.00	0.00
85	E40a_E41a	KnownJunction	0	0.00	0.00	0.00	0.00	3.07	0.00	0.00
86	ER41a	ExonRegion	0	0.00	0.00	0.00	0.00	3.30	0.00	0.00
87	E41a_E42a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	0.00	0.00
88	ER42a	ExonRegion	0	0.43	1.31	0.00	0.00	5.04	0.00	0.00
89	E42a_E43a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
90	ER43a	ExonRegion	0	0.39	0.61	0.00	0.00	4.63	0.00	0.00
91	E43a_E44a	KnownJunction	0	0.00	0.00	0.00	0.00	8.53	0.00	0.00
92	ER44a	ExonRegion	0	0.00	0.00	0.00	0.86	4.80	0.00	0.00
93	E44a_E45a	KnownJunction	0	0.00	0.00	0.00	1.57	6.13	0.00	0.00
94	ER45a	ExonRegion	0	0.24	0.00	0.00	0.64	5.49	0.00	0.00
95	E45a_E46a	KnownJunction	0	0.98	0.00	0.00	1.60	5.44	0.00	0.00
96	ER46a	ExonRegion	0	0.40	0.60	0.00	1.02	7.16	0.00	0.00
97	E46a_E47a	KnownJunction	0	1.03	1.10	0.00	1.27	7.68	0.00	0.00
98	ER47a	ExonRegion	0	2.19	0.95	0.47	0.11	10.23	0.00	0.00
99	E47a_E48a	KnownJunction	0	2.74	1.52	1.42	0.00	9.47	0.00	0.00
100	ER48a	ExonRegion	0	0.84	1.13	0.66	0.00	4.79	0.00	0.00
101	E48a_E49a	KnownJunction	0	0.00	2.92	0.00	0.00	4.17	0.00	0.00
102	ER49a	ExonRegion	0	1.00	0.91	0.30	0.00	4.99	0.00	0.00
103	E49a_E50a	KnownJunction	0	0.73	1.23	0.55	0.00	5.21	0.00	0.00
104	ER50a	ExonRegion	0	1.41	0.93	0.05	0.00	11.66	0.00	0.00
105	E50a_E51a	KnownJunction	0	2.15	0.00	0.00	0.00	15.72	0.00	0.00
106	ER51a	ExonRegion	0	0.90	0.45	0.79	0.00	9.28	0.78	0.00
107	E51a_E52a	KnownJunction	0	0.00	0.00	0.00	0.00	3.02	0.00	0.00
108	ER52a	ExonRegion	0	0.00	0.57	0.32	0.00	3.34	0.00	0.00
109	E52a_E53a	KnownJunction	0	0.00	0.00	0.00	0.00	2.33	0.00	0.00
110	ER53a	ExonRegion	0	0.00	1.49	0.18	0.00	4.93	0.00	0.00
111	E53a_E54a	KnownJunction	0	0.00	1.10	0.00	0.00	9.24	0.00	0.00
112	ER54a	ExonRegion	0	0.00	0.49	0.32	0.00	5.07	0.00	0.26
113	E54a_E55a	KnownJunction	0	0.00	1.16	0.00	0.00	5.67	0.00	0.64
114	ER55a	ExonRegion	0	0.00	0.00	1.56	0.00	6.62	0.00	0.43
115	E55a_E56a	KnownJunction	0	0.00	0.00	1.78	0.00	3.18	0.00	0.60
116	ER56a	ExonRegion	0	0.00	0.00	1.51	0.00	6.82	0.00	0.05
117	E56a_E57a	KnownJunction	0	0.00	0.00	1.55	0.00	12.75	0.00	0.00
118	ER57a	ExonRegion	0	0.86	0.46	1.08	0.00	7.63	0.00	0.00
119	E57a_E58a	KnownJunction	0	1.00	1.18	0.00	0.00	6.41	0.00	0.00
120	ER58a	ExonRegion	0	1.30	1.07	0.66	0.00	7.11	0.00	0.00
121	E58a_E59a	KnownJunction	0	3.05	1.63	0.00	0.00	6.52	0.00	0.00
122	ER59a	ExonRegion	0	0.96	0.62	0.70	0.00	6.83	0.00	0.00
123	E59a_E60a	KnownJunction	0	2.72	1.63	0.00	0.00	13.53	0.00	0.00
124	ER60a	ExonRegion	0	1.36	0.37	0.48	0.00	8.23	0.00	0.00
125	E60a_E61a	KnownJunction	0	0.00	0.00	1.78	0.00	3.30	0.00	0.00
126	ER61a	ExonRegion	0	0.05	0.64	1.44	0.00	7.90	0.00	0.00
127	E61a_E62a	KnownJunction	0	0.68	0.00	1.77	0.00	7.81	0.00	0.00
128	ER62a	ExonRegion	0	0.81	0.00	1.78	0.52	8.29	0.47	0.28
129	E62a_E63a	KnownJunction	0	1.87	0.00	1.48	0.00	6.20	0.00	0.00
130	ER63a	ExonRegion	0	2.17	0.00	2.26	0.93	9.19	0.07	0.50
131	E63a_E64a	KnownJunction	0	2.24	0.00	2.89	0.00	12.56	0.00	0.00
132	ER64a	ExonRegion	0	1.45	0.00	2.24	0.00	7.96	0.00	0.00
133	E64_Da	NovelBoundary	0	0.00	2.71	0.00	0.00	8.69	0.00	0.00
134	E64a_E65a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
135	ER65a	ExonRegion	0	0.00	0.00	1.40	0.00	4.69	1.12	0.00
136	E65a_E66a	KnownJunction	0	0.00	0.00	0.89	0.00	1.78	0.00	0.00
137	ER66a	ExonRegion	0	0.25	0.78	2.57	0.00	9.05	0.79	0.00
138	E66a_E67a	KnownJunction	0	0.00	1.44	0.00	0.00	3.23	0.00	0.00
139	ER67a	ExonRegion	0	0.32	0.00	1.31	0.00	7.52	0.00	0.00
140	E67a_E68a	KnownJunction	0	0.00	0.00	0.60	0.00	2.07	0.00	0.00
141	ER68a	ExonRegion	0	0.95	0.31	2.13	0.00	5.29	0.00	0.00
142	E68a_E69a	KnownJunction	0	0.00	1.42	1.29	0.00	6.04	0.00	0.00
143	ER69a	ExonRegion	0	0.95	0.80	0.11	0.00	2.94	0.00	0.00
144	E69a_E70a	KnownJunction	0	0.00	1.08	0.00	0.00	1.13	0.00	0.00
145	ER70a	ExonRegion	0	0.67	1.09	0.35	0.00	2.91	0.00	0.00
146	E70a_E71a	KnownJunction	0	0.00	1.23	0.00	0.00	1.18	0.00	0.00
147	ER71a	ExonRegion	0	0.13	0.11	0.00	0.00	1.03	0.00	0.00
148	E71a_E72a	KnownJunction	0	1.02	0.00	0.00	0.00	1.11	0.00	0.00
149	ER72a	ExonRegion	0	0.29	0.37	0.01	0.52	2.86	0.00	0.00
150	E72a_E73a	KnownJunction	0	0.00	1.63	0.00	1.52	3.25	0.00	0.00
151	ER73a	ExonRegion	0	0.50	0.72	1.59	0.65	4.10	0.00	0.00
152	E73a_E74a	KnownJunction	0	0.97	0.00	0.00	0.00	4.36	0.00	0.00
153	ER74a	ExonRegion	0	0.92	2.46	0.35	0.13	4.41	0.00	0.00
154	E74a_E75a	KnownJunction	0	0.00	3.26	0.00	1.25	1.98	0.00	0.00
155	ER75a	ExonRegion	0	0.79	0.74	0.40	0.59	5.90	0.00	0.00
156	E75a_E76a	KnownJunction	0	0.83	0.00	0.00	0.00	3.30	0.00	0.00
157	ER76a	ExonRegion	0	0.32	2.42	1.21	0.42	6.63	0.40	0.00
158	E76a_E77a	KnownJunction	0	0.00	0.00	0.00	0.00	4.26	0.00	0.00
159	ER77a	ExonRegion	0	0.20	0.45	0.63	0.00	8.21	0.49	0.00
160	E77a_E78a	KnownJunction	0	0.00	2.60	0.00	0.00	4.01	0.00	0.00
161	ER78a	ExonRegion	0	0.49	1.59	0.43	0.00	4.59	0.00	0.00
162	E78a_E79a	KnownJunction	0	0.00	0.00	0.00	0.00	5.07	0.00	0.00
163	I78	Intron	0	0.36	0.34	3.40	0.27	18.68	0.11	0.30
164	I78_SR1	SilentIntronRegion	0	0.36	0.35	3.43	0.28	18.84	0.12	0.30
165	E79_Aa	NovelBoundary	0	0.00	0.00	6.06	0.00	35.11	0.00	0.00
166	ER79a	ExonRegion	0	2.06	0.66	3.81	0.00	30.15	0.00	0.42
167	E79_Da	NovelBoundary	0	1.00	0.00	3.98	2.65	42.74	0.00	0.69
168	E79a_E80a	KnownJunction	0	1.82	1.31	0.00	0.00	2.35	0.00	0.00
169	I79	Intron	0	0.26	0.21	3.64	1.06	25.74	0.00	0.34
170	I79_SR1	SilentIntronRegion	0	0.26	0.21	3.65	1.06	25.79	0.00	0.34
171	E80_Aa	NovelBoundary	0	0.87	0.00	5.92	0.00	23.79	0.00	0.70
172	ER80a	ExonRegion	0	2.37	0.63	5.06	0.00	24.29	0.99	0.28
173	E80_Da	NovelBoundary	0	1.85	0.00	5.81	0.00	27.36	0.00	1.20
174	E80a_E81a	KnownJunction	0	0.00	0.00	0.00	0.00	3.43	0.00	0.00
175	I80	Intron	0	0.00	0.00	1.05	0.00	16.72	0.00	0.00
176	I80_AR1	ActiveIntronRegion	0	0.00	0.00	1.06	0.00	17.10	0.00	0.00
177	E81_Aa	NovelBoundary	0	0.72	0.00	3.26	0.00	24.41	0.00	0.00
178	ER81a	ExonRegion	0	0.45	0.00	2.95	0.00	25.31	1.35	1.70
179	E81_Da	NovelBoundary	0	0.95	0.00	2.72	0.00	21.92	0.00	1.06
180	E81a_E82a	KnownJunction	0	0.65	0.00	0.00	0.00	7.15	2.41	0.00
181	I81	Intron	0	0.73	0.07	4.12	0.61	27.12	0.04	0.86
182	I81_SR1	SilentIntronRegion	0	0.03	0.00	3.49	0.00	25.46	0.00	1.35
183	I81_AR1	ActiveIntronRegion	0	0.52	0.00	4.41	0.73	26.85	0.00	1.82
184	I81_SR2	SilentIntronRegion	0	0.78	0.00	3.08	0.25	17.82	0.00	0.46
185	I81_AR2	ActiveIntronRegion	0	0.78	0.00	5.02	1.01	34.57	0.10	0.60
186	I81_SR3	SilentIntronRegion	0	1.22	0.82	5.14	0.88	33.30	0.00	1.10
187	I81_AR3	ActiveIntronRegion	0	1.03	0.49	2.52	0.00	26.74	0.00	0.42
188	E82_Aa	NovelBoundary	0	0.00	0.00	1.28	0.00	40.60	0.00	3.40
189	ER82a	ExonRegion	0	0.54	0.00	0.92	0.84	17.90	0.30	0.02
190	E82_Da	NovelBoundary	0	0.00	0.00	3.20	0.00	24.04	0.00	0.00
191	E82a_E83a	KnownJunction	0	1.27	0.00	0.00	0.00	3.90	0.00	0.00
192	I82	Intron	0	0.14	0.22	2.33	0.23	22.25	0.00	0.25
193	I82_AR1	ActiveIntronRegion	0	0.00	0.34	2.43	0.35	20.94	0.00	0.19
194	I82_SR1	SilentIntronRegion	0	0.41	0.00	2.17	0.00	25.07	0.00	0.36
195	E83_Aa	NovelBoundary	0	0.00	0.00	1.44	0.00	18.74	0.00	0.83
196	ER83a	ExonRegion	0	1.35	0.65	2.41	2.02	20.05	0.00	0.35
197	E83_Da	NovelBoundary	0	0.00	1.23	7.17	0.00	20.63	0.00	0.00
198	E83a_E84a	KnownJunction	0	1.03	0.00	0.00	0.00	1.18	0.00	0.00
199	I83	Intron	0	0.26	0.27	4.17	0.84	26.03	0.00	0.61
200	I83_SR1	SilentIntronRegion	0	0.26	0.27	4.19	0.84	26.16	0.00	0.61
201	E84_Aa	NovelBoundary	0	2.69	1.34	16.63	6.66	77.67	0.00	4.41
202	ER84a	ExonRegion	0	0.05	0.00	0.00	0.00	0.47	0.00	0.00
203	E84_Da	KnownBoundary	0	20.38	22.25	15.30	5.47	21.35	12.86	5.49
204	ER84b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00