Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HDAC9	Gene	0	64.95	58.32	6.44	9.45	39.67	18.00	59.65
2	405010	Transcript	0	0	0	0	0	0	0	0
3	406451	Transcript	0	0.77	0.00	0.00	0.00	0.00	0.00	0.00
4	406072	Transcript	0	0.51	2.06	0.01	0.00	3.01	0.29	0.01
5	401921	Transcript	0	0	0	0	0	0	0	0
6	341009	Transcript	0	0.44	0.81	0.00	0.81	0.00	1.08	1.20
7	262069	Transcript	0	0	0	0	0	0	0	0
8	ER1a	ExonRegion	1	41.23	71.93	3.31	3.48	59.07	8.19	0.02
9	E1_Da	NovelBoundary	0	15.92	16.58	0.89	0.00	6.85	1.66	0.86
10	E1a_E2b	KnownJunction	1	3.19	20.83	0.00	0.00	3.02	1.58	0.00
11	I1_AR1	ActiveIntronRegion	1	18.05	19.70	1.84	1.68	16.14	1.66	0.31
12	ER2a	ExonRegion	0	0.51	2.06	0.01	0.00	3.01	0.29	0.01
13	E2_Ab	KnownBoundary	0	0.87	5.25	0.00	0.00	4.24	1.34	0.00
14	ER2b	ExonRegion	1	14.03	63.70	1.16	0.06	25.35	6.86	0.85
15	E2a_E4b	KnownJunction	1	21.33	79.89	1.18	0.00	33.54	13.32	0.53
16	I2_AR5	ActiveIntronRegion	1	37.65	89.45	4.82	14.81	2.91	12.03	74.00
17	I2_SR5	SilentIntronRegion	0	17.26	38.11	2.77	5.66	2.01	6.52	5.77
18	I2_AR6	ActiveIntronRegion	0	13.48	26.46	2.64	1.12	2.24	3.45	7.86
19	I2_AR7	ActiveIntronRegion	0	12.89	21.87	1.35	1.94	1.98	5.45	8.10
20	I2_AR8	ActiveIntronRegion	1	12.38	21.87	1.66	2.49	2.16	1.23	8.77
21	I2_SR6	SilentIntronRegion	0	7.40	16.24	0.74	1.85	1.13	3.90	7.24
22	I2_AR9	ActiveIntronRegion	0	12.45	21.88	0.66	2.97	1.16	4.18	11.34
23	I2_SR7	SilentIntronRegion	0	5.90	12.97	0.44	1.14	0.73	2.24	5.52
24	I2_AR11	ActiveIntronRegion	0	6.33	13.88	0.00	2.81	0.81	1.29	5.24
25	I2_AR15	ActiveIntronRegion	0	12.51	19.47	0.40	2.61	1.19	5.26	8.06
26	I2_AR16	ActiveIntronRegion	1	5.29	13.26	0.66	1.50	0.56	0.51	5.53
27	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.10
28	ER4a	ExonRegion	0	2.22	9.58	0.15	0.55	3.69	1.09	2.70
29	ER4b	ExonRegion	0	89.41	166.93	7.13	21.48	66.82	35.87	107.46
30	E4a_E5a	KnownJunction	0	80.78	203.18	8.71	27.20	38.84	38.46	101.61
31	E4a_E5b	KnownJunction	1	13.55	35.47	1.37	0.00	23.26	6.46	11.15
32	E4a_E6a	NovelJunction	0	4.67	5.49	0.00	0.00	0.00	0.00	10.02
33	E5_Ab	NovelBoundary	0	57.68	134.77	6.09	23.33	22.82	22.81	68.23
34	ER5a	ExonRegion	0	83.30	217.95	11.58	31.80	46.97	38.50	107.93
35	ER5b	ExonRegion	0	163.43	244.22	14.80	34.81	100.78	48.34	157.09
36	E5_Da	NovelBoundary	0	11.48	18.81	0.00	4.96	0.00	8.63	4.80
37	E5a_E6a	KnownJunction	0	122.25	168.35	15.23	17.83	82.37	30.18	158.36
38	E6_Aa	NovelBoundary	1	3.14	17.94	0.00	5.39	0.00	0.00	1.58
39	ER6a	ExonRegion	0	173.83	202.97	15.94	32.01	96.54	39.49	158.14
40	E6a_E7a	KnownJunction	0	132.69	167.72	11.01	29.91	83.01	26.08	154.72
41	ER7a	ExonRegion	0	141.45	200.45	12.20	29.77	92.52	34.93	158.47
42	E7a_E8a	KnownJunction	1	96.27	90.87	3.65	16.15	64.71	10.59	74.72
43	E7a_E9a	KnownJunction	0	57.41	68.86	7.37	11.81	38.71	12.57	53.46
44	ER8a	ExonRegion	1	69.82	92.83	4.38	10.53	44.46	9.23	74.21
45	E8a_E9a	KnownJunction	1	51.61	73.30	4.45	8.45	34.69	3.97	65.74
46	ER9a	ExonRegion	1	110.46	158.97	9.44	15.89	94.31	20.98	139.62
47	E9a_E10a	KnownJunction	1	110.44	126.52	9.31	18.86	87.02	12.89	128.50
48	ER10a	ExonRegion	0	93.01	138.67	9.65	19.01	70.67	27.38	142.08
49	E10a_E11a	KnownJunction	0	63.77	92.40	4.81	14.20	43.82	29.72	84.73
50	ER11a	ExonRegion	0	95.24	133.63	10.01	19.62	69.54	26.91	137.69
51	E11a_E12a	KnownJunction	0	91.19	151.40	8.46	17.28	57.95	32.48	104.91
52	ER12a	ExonRegion	0	84.89	112.80	10.40	17.75	61.32	25.85	121.23
53	E12a_E13a	KnownJunction	1	49.32	59.03	8.65	8.13	82.60	7.16	92.91
54	E12a_E14a	KnownJunction	0	0.88	1.63	0.00	1.63	0.00	0.00	2.41
55	ER13a	ExonRegion	0	65.53	88.69	8.39	13.17	60.14	20.84	91.73
56	E13_Da	KnownBoundary	0	92.93	86.28	6.16	11.76	67.41	27.01	92.74
57	E13a_E14a	KnownJunction	0	8.70	4.31	1.91	2.38	11.50	1.66	4.93
58	ER13b	ExonRegion	0	110.96	64.19	9.27	11.18	61.55	21.55	84.42
59	ER14a	ExonRegion	0	7.98	3.26	0.61	3.59	6.47	3.07	7.70
60	E14a_E15a	KnownJunction	0	8.51	2.73	2.11	4.25	6.45	4.98	7.52
61	ER15a	ExonRegion	0	8.15	5.58	1.10	1.64	6.24	2.42	6.11
62	E15a_E16a	KnownJunction	0	6.66	4.36	0.00	0.00	2.95	2.89	0.72
63	ER16a	ExonRegion	0	9.66	5.89	2.13	0.00	4.71	2.51	5.40
64	E16a_E17a	KnownJunction	0	8.63	4.02	0.00	0.00	8.71	2.68	0.87
65	ER17a	ExonRegion	0	7.91	2.43	0.00	0.00	5.30	1.42	4.03
66	E17a_E18a	KnownJunction	0	6.49	0.00	0.00	0.00	3.73	0.00	7.08
67	ER18a	ExonRegion	0	4.09	1.07	0.72	0.00	2.44	0.86	4.21
68	E18a_E19a	KnownJunction	0	5.87	2.76	0.89	0.00	1.18	0.00	2.95
69	ER19a	ExonRegion	0	6.89	3.25	0.47	0.00	1.74	0.00	4.77
70	E19a_E20a	KnownJunction	0	6.74	4.89	0.00	0.00	3.25	0.00	7.38
71	ER20a	ExonRegion	0	7.10	4.47	1.30	0.81	3.61	1.20	9.02
72	E20a_E21a	KnownJunction	0	7.69	2.81	0.72	1.35	4.17	1.21	8.14
73	ER21a	ExonRegion	0	11.85	3.24	3.61	2.21	4.50	2.02	8.97
74	E21a_E22a	KnownJunction	0	13.40	4.41	0.00	4.80	4.29	1.26	10.99
75	ER22a	ExonRegion	0	12.44	3.59	0.78	2.79	3.89	0.84	11.43
76	E22a_E23a	KnownJunction	0	9.08	4.57	1.54	1.68	3.27	1.50	6.41
77	ER23a	ExonRegion	0	11.78	1.79	1.71	1.19	2.27	2.20	5.45
78	E23a_E24a	KnownJunction	0	6.21	1.39	0.59	3.09	1.11	1.66	6.41
79	ER24a	ExonRegion	0	5.21	1.07	1.27	1.58	1.20	1.43	6.71
80	E24a_E25a	KnownJunction	0	8.06	4.33	0.89	1.19	1.18	1.66	6.79
81	ER25a	ExonRegion	0	6.64	3.06	0.99	3.87	3.47	3.59	6.31
82	E25_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
83	E25a_E26a	KnownJunction	0	6.61	4.10	1.06	4.63	3.04	2.84	6.69
84	ER25b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	2.16	0.00
85	E26_Aa	NovelBoundary	1	0.70	0.00	0.00	3.09	0.00	15.65	0.56
86	ER26a	ExonRegion	0	6.25	2.71	1.32	2.00	2.27	8.51	7.99
87	E26_Da	NovelBoundary	1	0.87	0.00	0.00	1.49	0.00	18.87	0.00
88	E26a_E27a	KnownJunction	0	5.51	7.49	0.00	4.20	1.11	4.64	7.85
89	I26_AR1	ActiveIntronRegion	1	0.28	0.33	1.14	2.68	0.15	17.93	1.27
90	I26_SR2	SilentIntronRegion	1	0.70	0.00	1.12	1.04	0.02	12.72	0.56
91	E27_Aa	NovelBoundary	1	0.88	0.00	0.68	0.00	0.00	22.73	0.76
92	ER27a	ExonRegion	1	8.22	2.76	3.08	3.06	3.04	15.20	7.21
93	E27_Da	KnownBoundary	1	7.54	4.76	2.31	1.68	1.13	21.60	7.58
94	ER27b	ExonRegion	1	12.36	1.29	4.22	2.89	2.63	19.11	7.19
95	ER27c	ExonRegion	0	0.77	0.00	0.00	0.00	0.00	0.00	0.00
96	IG37_SR1	SilentIntergenicRegion	0	14.63	1.55	5.68	2.59	2.76	7.15	6.30
97	IG37_AR1	ActiveIntergenicRegion	0	11.41	1.60	4.81	2.53	3.09	10.45	6.65
98	IG37_SR2	SilentIntergenicRegion	0	19.26	3.80	4.61	1.57	5.74	14.14	6.86
99	IG37_AR2	ActiveIntergenicRegion	0	11.73	1.71	3.83	1.90	5.39	6.36	7.58
100	IG37_AR4	ActiveIntergenicRegion	0	0.54	0.00	0.00	1.67	0.00	33.08	0.45
101	IG37_AR12	ActiveIntergenicRegion	0	0.05	0.00	0.07	0.53	0.00	8.04	0.39