Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MAD1L1	Gene	0	26.23	47.29	31.22	43.98	52.52	38.86	30.24
2	406869	Transcript	0	13.13	16.05	18.90	14.33	13.18	7.11	14.72
3	399654	Transcript	0	4.64	9.11	6.46	9.52	6.77	7.05	6.26
4	402746	Transcript	0	0.47	0.78	0.74	0.41	0.47	0.49	0.22
5	265854	Transcript	0	0.00	0.00	0.12	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.00	0.02	0.00	0.32	0.43	0.53	0.09
7	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	3.19	0.00
8	E1_Ac	KnownBoundary	0	0.00	1.02	0.00	0.00	0.00	0.00	0.00
9	ER1b	ExonRegion	0	0.00	1.21	0.00	0.42	1.08	1.23	0.67
10	ER1c	ExonRegion	0	7.62	15.04	9.69	11.94	23.13	8.62	11.72
11	E1a_E2a	KnownJunction	0	5.29	8.54	7.56	10.10	8.78	6.51	6.95
12	E1a_E2b	KnownJunction	0	26.27	32.08	37.79	28.34	25.93	13.69	29.35
13	E1a_E5a	KnownJunction	0	0.00	3.13	0.57	1.65	0.99	0.00	0.89
14	ER2a	ExonRegion	0	3.99	9.69	5.37	8.94	4.76	7.60	5.58
15	E2_Ab	KnownBoundary	0	9.73	9.12	11.28	5.58	0.92	4.42	3.71
16	ER2b	ExonRegion	0	23.71	38.29	34.66	37.91	24.32	20.86	25.99
17	E2a_E3a	KnownJunction	0	49.99	42.61	74.15	44.16	74.83	27.74	48.66
18	ER3a	ExonRegion	0	46.31	64.91	63.34	62.38	84.14	42.12	45.54
19	E3a_E4a	KnownJunction	1	31.36	66.99	48.30	44.75	55.23	23.91	34.64
20	E3a_E5a	NovelJunction	0	2.57	8.64	2.85	1.65	3.09	1.18	8.17
21	E4_Aa	NovelBoundary	0	4.64	12.40	5.32	14.41	0.00	5.82	3.47
22	ER4a	ExonRegion	0	47.90	69.29	52.20	63.14	77.05	43.33	35.71
23	E4a_E5a	KnownJunction	1	46.50	53.80	47.08	48.41	79.05	46.85	26.77
24	ER5a	ExonRegion	0	30.93	65.33	37.93	51.78	62.50	33.57	33.31
25	E5a_E6a	KnownJunction	0	0.90	0.00	0.00	0.00	0.00	0.00	0.00
26	E5a_E7a	KnownJunction	1	25.70	73.27	42.03	61.77	62.80	27.60	41.62
27	ER6a	ExonRegion	0	0.97	0.00	1.61	0.00	0.89	0.29	0.00
28	E6a_E7a	KnownJunction	0	0.00	0.00	0.76	0.00	0.00	1.66	0.00
29	ER7a	ExonRegion	1	34.58	86.37	49.96	63.73	77.80	31.47	47.29
30	E7a_E8a	KnownJunction	1	57.08	90.66	75.31	72.69	78.59	33.87	49.86
31	ER8a	ExonRegion	1	50.34	89.84	66.47	83.46	83.87	35.64	51.95
32	E8a_E9a	KnownJunction	1	38.52	83.10	54.10	79.40	63.70	33.15	53.63
33	ER9a	ExonRegion	1	40.56	74.04	49.45	63.44	68.00	27.89	45.36
34	E9a_E10a	KnownJunction	0	43.63	71.43	56.36	45.38	82.90	29.59	39.18
35	ER10a	ExonRegion	0	31.27	62.88	41.03	50.82	63.20	26.08	36.49
36	E10a_E11a	KnownJunction	1	31.79	45.50	29.79	54.34	61.27	20.90	40.64
37	ER11a	ExonRegion	0	30.30	57.82	36.82	56.52	60.40	27.64	41.68
38	E11a_E12a	KnownJunction	0	28.32	58.85	38.38	46.92	66.65	39.40	39.66
39	I11_AR17	ActiveIntronRegion	1	10.72	2.68	3.18	0.00	3.34	1.08	3.26
40	ER12a	ExonRegion	0	27.03	58.89	40.42	52.93	55.88	32.37	31.32
41	E12a_E13a	KnownJunction	0	27.37	46.87	28.87	49.74	39.54	31.62	28.48
42	ER13a	ExonRegion	0	29.07	43.75	31.43	46.69	51.89	37.53	26.72
43	E13a_E14a	KnownJunction	0	29.62	59.35	31.08	48.66	61.16	42.48	30.10
44	ER14a	ExonRegion	0	24.66	38.07	27.69	45.38	65.31	40.15	27.10
45	E14a_E15a	KnownJunction	0	20.78	45.76	30.87	46.54	77.67	52.37	35.77
46	E14a_E16a	NovelJunction	1	1.62	5.88	3.79	15.96	0.90	3.30	0.00
47	ER15a	ExonRegion	0	29.09	53.65	41.61	47.49	82.68	58.22	45.27
48	E15a_E16a	KnownJunction	0	42.54	59.95	49.91	47.30	112.15	58.83	49.44
49	ER16a	ExonRegion	0	45.14	67.31	46.58	58.05	95.57	64.05	55.69
50	E16a_E17a	KnownJunction	0	28.54	66.49	38.27	80.16	82.51	59.55	44.13
51	ER17a	ExonRegion	0	25.59	67.02	35.72	62.90	76.44	56.14	51.17
52	E17a_E18a	KnownJunction	0	39.29	63.37	48.28	49.96	86.08	57.35	70.30
53	I17_AR1	ActiveIntronRegion	1	0.44	0.20	0.88	1.62	0.36	9.88	0.00
54	ER18a	ExonRegion	0	34.78	57.61	29.98	53.96	71.79	73.12	40.41
55	E18a_E19a	KnownJunction	1	37.39	37.70	44.20	62.96	83.29	92.41	41.48
56	ER19a	ExonRegion	0	40.29	60.53	43.00	77.10	83.16	98.16	46.00
57	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	E19b_E21a	KnownJunction	1	31.06	38.91	43.30	58.79	73.40	97.60	42.15
59	ER19b	ExonRegion	1	27.98	43.13	46.23	70.87	73.36	97.47	43.01
60	ER20a	ExonRegion	0	0.00	0.00	0.25	0.00	0.00	0.00	0.00
61	ER21a	ExonRegion	0	15.03	37.13	14.46	31.81	36.55	51.74	21.66
62	IG19_SR8	SilentIntergenicRegion	0	0.00	0.00	0.00	1.56	8.40	3.10	0.00
63	IG19_AR7	ActiveIntergenicRegion	0	0.00	0.13	0.00	1.07	10.81	3.19	0.16
64	IG19_SR7	SilentIntergenicRegion	0	0.00	0.12	0.38	0.14	20.32	2.22	0.51
65	IG19_AR6	ActiveIntergenicRegion	0	0.00	0.00	0.51	1.58	28.93	4.16	0.11