Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MAGI1	Gene	0	197.84	138.62	29.33	12.58	24.94	72.42	10.81
2	367205	Transcript	0	11.25	4.03	2.22	0.82	0.00	0.77	0.28
3	367213	Transcript	0	0	0	0	0	0	0	0
4	367209	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
5	ER1a	ExonRegion	0	31.79	72.73	5.10	5.69	4.31	33.97	1.82
6	E1a_E2a	KnownJunction	1	111.94	198.11	28.42	4.33	14.78	71.47	6.54
7	I1_AR4	ActiveIntronRegion	0	42.14	4.82	3.80	1.83	1.84	1.79	0.49
8	I1_SR4	SilentIntronRegion	0	46.34	5.14	2.32	0.00	2.76	0.00	0.62
9	ER2a	ExonRegion	0	225.50	219.87	33.84	16.04	29.27	101.74	9.76
10	E2a_E3a	KnownJunction	0	275.85	257.43	45.76	19.07	40.20	160.13	14.23
11	ER3a	ExonRegion	0	309.02	215.36	42.74	15.93	36.17	109.91	12.02
12	E3a_E4a	KnownJunction	0	147.04	158.76	28.71	6.47	25.38	62.34	9.42
13	E3a_E5a	NovelJunction	1	43.71	18.34	0.89	3.36	0.00	5.82	0.00
14	ER4a	ExonRegion	0	200.77	170.81	32.31	14.96	27.98	69.58	13.78
15	E4a_E5a	KnownJunction	0	162.68	144.15	28.48	21.54	34.21	66.03	15.39
16	I4_AR2	ActiveIntronRegion	1	42.98	5.23	4.89	2.37	1.57	4.79	1.63
17	I4_AR3	ActiveIntronRegion	0	73.60	5.47	4.78	0.21	1.08	3.68	0.34
18	I4_AR4	ActiveIntronRegion	1	69.16	2.43	4.83	1.25	0.71	8.58	0.00
19	ER5a	ExonRegion	0	251.70	188.45	37.08	18.65	34.79	81.27	16.16
20	E5a_E6a	KnownJunction	0	267.81	177.86	35.55	12.98	33.56	66.14	9.30
21	ER6a	ExonRegion	0	240.33	212.04	42.57	24.87	30.28	85.57	16.35
22	E6a_E7a	KnownJunction	0	235.16	188.21	41.30	25.87	25.87	83.19	14.73
23	ER7a	ExonRegion	0	248.42	177.90	46.87	19.70	30.95	95.69	11.66
24	E7a_E8a	KnownJunction	0	211.36	148.33	51.32	17.20	33.63	89.35	9.76
25	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
26	ER8a	ExonRegion	0	184.32	161.29	45.50	16.81	34.89	97.00	13.25
27	E8a_E9a	KnownJunction	1	133.54	153.06	42.32	22.05	23.15	97.18	16.37
28	ER9a	ExonRegion	0	205.81	154.53	44.91	16.48	25.68	94.26	14.84
29	E9a_E10a	KnownJunction	0	15.72	6.62	3.13	1.22	0.00	1.15	0.56
30	E9a_E11a	KnownJunction	0	181.20	156.39	31.40	13.87	30.25	73.67	18.56
31	ER10a	ExonRegion	0	6.79	1.45	1.31	0.42	0.00	0.38	0.00
32	ER11a	ExonRegion	0	224.28	173.64	45.23	11.55	34.73	75.78	18.47
33	E11a_E12a	KnownJunction	0	296.56	156.66	42.68	9.18	21.32	66.46	19.88
34	ER12a	ExonRegion	0	442.08	211.92	55.27	20.82	51.90	103.76	20.12
35	E12_Da	NovelBoundary	1	154.62	35.73	18.49	2.79	0.85	5.25	2.35
36	E12a_E13a	KnownJunction	0	503.12	201.11	48.97	27.50	35.71	127.30	14.59
37	ER13a	ExonRegion	0	393.46	179.97	34.61	15.45	38.02	81.94	16.20
38	E13a_E14a	KnownJunction	0	279.32	96.23	31.01	11.87	32.80	42.58	14.46
39	ER14a	ExonRegion	0	191.43	118.40	27.08	11.23	24.29	69.85	10.85
40	IG50	Intergenic	0	24.03	2.71	2.36	0.51	0.95	0.73	0.89
41	IG50_SR11	SilentIntergenicRegion	0	24.86	3.99	2.51	0.00	2.73	0.93	1.87
42	IG50_AR11	ActiveIntergenicRegion	0	23.41	5.95	4.11	1.03	2.61	1.13	1.62
43	IG50_SR9	SilentIntergenicRegion	0	11.46	3.98	2.11	0.19	0.67	0.41	0.00
44	IG50_SR8	SilentIntergenicRegion	0	27.47	5.48	3.74	0.69	2.23	1.04	1.34
45	IG50_AR9	ActiveIntergenicRegion	0	66.73	3.61	9.44	0.94	1.44	0.52	1.57
46	IG50_SR7	SilentIntergenicRegion	0	64.34	5.55	6.42	1.45	2.94	0.95	2.78
47	IG50_AR8	ActiveIntergenicRegion	0	59.34	9.30	5.79	1.52	2.81	2.81	2.89
48	IG50_SR6	SilentIntergenicRegion	0	27.67	3.78	3.78	0.50	0.89	1.35	0.95
49	IG50_AR7	ActiveIntergenicRegion	0	31.78	6.38	3.96	0.49	2.27	2.14	1.36
50	IG50_AR6	ActiveIntergenicRegion	0	59.66	6.77	5.51	1.24	2.40	1.40	1.95
51	IG50_AR5	ActiveIntergenicRegion	0	11.78	1.68	0.23	0.00	1.31	0.85	1.16
52	IG50_AR4	ActiveIntergenicRegion	0	41.89	3.40	3.86	1.04	2.43	2.34	1.38
53	IG50_SR3	SilentIntergenicRegion	0	24.56	3.77	3.59	0.23	0.79	0.22	1.11
54	IG50_AR3	ActiveIntergenicRegion	0	32.82	6.49	3.88	0.00	1.39	4.32	1.03
55	IG50_SR2	SilentIntergenicRegion	0	19.26	0.00	0.77	0.00	0.09	0.00	0.00
56	IG50_SR1	SilentIntergenicRegion	0	11.69	1.01	0.79	0.27	0.17	0.28	0.32