Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MLLT4	Gene	0	540.96	900.15	218.03	260.96	321.23	145.63	210.13
2	366809	Transcript	0	0	0	0	0	0	0	0
3	344191	Transcript	1	52.92	52.92	19.24	62.37	19.89	23.24	5.18
4	341575	Transcript	0	0	0	0	0	0	0	0
5	392112	Transcript	0	1.23	0.00	0.28	0.00	2.67	0.00	0.00
6	366806	Transcript	0	0	0	0	0	0	0	0
7	351017	Transcript	1	14.60	25.51	4.74	4.99	36.44	7.36	7.42
8	366805	Transcript	0	18.06	70.92	9.19	15.04	3.54	8.28	5.99
9	392108	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1a	ExonRegion	0	1.73	3.24	1.97	2.27	1.03	0.31	1.04
11	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER5a	ExonRegion	0	71.25	234.58	43.13	59.58	15.17	35.75	28.13
16	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E5a_E7b	KnownJunction	0	192.47	639.55	107.40	151.17	61.02	81.42	65.71
18	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER7a	ExonRegion	0	72.23	283.67	36.75	60.17	14.17	33.10	23.95
20	ER7b	ExonRegion	0	156.97	660.67	81.66	126.71	42.63	78.88	61.71
21	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E7a_E8b	KnownJunction	0	283.73	714.79	128.14	139.11	137.42	86.43	95.26
23	ER8a	ExonRegion	0	117.38	326.49	53.51	69.21	29.76	43.52	36.77
24	ER8b	ExonRegion	0	212.10	401.78	100.91	89.58	115.66	51.35	65.69
25	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER9a	ExonRegion	0	393.22	853.70	197.45	203.55	196.84	96.69	147.90
27	E9a_E10a	KnownJunction	0	667.18	1466.50	349.86	340.97	390.49	164.12	224.97
28	E10_Aa	NovelBoundary	1	254.66	1.63	135.83	1.44	3.07	1.10	0.00
29	ER10a	ExonRegion	0	553.49	1424.67	299.22	337.83	303.10	177.86	222.11
30	E10a_E11a	KnownJunction	0	513.27	1423.83	290.28	336.69	277.69	166.05	212.81
31	ER11a	ExonRegion	0	478.91	1609.44	282.93	360.34	272.00	201.53	225.03
32	E11a_E12a	KnownJunction	0	459.37	1516.23	219.84	361.96	297.96	191.86	230.48
33	ER12a	ExonRegion	0	426.18	1674.72	222.24	373.32	271.59	226.10	233.77
34	E12a_E13a	KnownJunction	1	11.35	61.76	5.25	5.55	1.96	13.88	1.79
35	E12a_E14a	KnownJunction	0	381.92	1541.00	170.71	356.19	253.47	163.10	198.76
36	ER13a	ExonRegion	0	11.80	95.38	1.28	10.39	1.26	10.68	0.40
37	E13a_E14a	KnownJunction	0	12.12	101.12	0.56	15.74	0.00	15.81	0.64
38	ER14a	ExonRegion	0	416.98	1860.23	209.87	434.31	282.98	216.29	256.20
39	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E15_Aa	NovelBoundary	1	191.68	10.17	109.23	5.42	0.00	1.66	1.30
41	ER15a	ExonRegion	0	403.13	1594.05	213.50	371.96	301.21	169.98	236.43
42	E15a_E16a	KnownJunction	0	365.64	1530.34	205.29	332.43	298.76	157.69	204.65
43	ER16a	ExonRegion	0	416.36	1470.13	201.46	291.29	313.60	132.62	221.62
44	E16a_E17a	KnownJunction	0	379.68	1334.88	170.79	267.12	304.62	124.57	215.89
45	ER17a	ExonRegion	0	330.32	1344.95	176.69	280.33	265.76	138.49	223.30
46	E17a_E18a	KnownJunction	0	404.55	1275.90	213.69	308.41	281.36	138.07	243.13
47	ER18a	ExonRegion	0	431.56	1235.63	217.13	310.51	274.28	146.29	256.70
48	E18a_E19a	KnownJunction	0	417.50	1121.71	211.76	259.02	275.04	154.29	244.21
49	ER19a	ExonRegion	0	476.89	1254.21	218.71	289.59	383.97	144.34	249.73
50	E19a_E20a	KnownJunction	1	418.03	1192.17	72.58	204.78	324.77	91.68	53.18
51	I19	Intron	0	105.88	83.79	61.23	21.89	21.50	8.57	17.18
52	I19_AR1	ActiveIntronRegion	0	84.13	57.17	49.06	16.10	12.97	4.33	10.93
53	I19_SR1	SilentIntronRegion	0	91.21	44.85	54.95	15.46	9.16	5.37	10.32
54	I19_AR2	ActiveIntronRegion	0	102.76	81.84	70.81	21.08	20.37	9.27	19.56
55	I19_AR3	ActiveIntronRegion	0	89.10	116.11	59.74	24.46	20.94	7.82	14.68
56	I19_SR3	SilentIntronRegion	0	122.61	129.36	58.48	31.14	32.55	11.28	22.20
57	I19_AR4	ActiveIntronRegion	0	186.51	85.34	84.51	22.87	37.56	13.88	20.34
58	E20_Aa	NovelBoundary	1	166.65	131.70	86.83	34.78	25.20	20.02	24.87
59	ER20a	ExonRegion	0	607.70	1628.72	267.59	393.66	405.23	188.01	292.39
60	E20a_E21a	KnownJunction	0	641.63	1629.85	296.12	425.30	407.41	212.44	314.83
61	ER21a	ExonRegion	0	587.44	1552.19	261.19	383.18	393.06	179.27	294.41
62	E21a_E22a	KnownJunction	0	400.21	1431.69	202.00	363.70	366.40	157.69	291.80
63	ER22a	ExonRegion	0	500.17	1311.52	220.68	315.75	349.86	153.92	279.03
64	E22a_E23a	KnownJunction	0	565.94	1441.70	257.92	330.92	389.75	157.98	295.96
65	ER23a	ExonRegion	0	805.91	1552.39	335.51	405.78	447.70	156.97	315.62
66	E23a_E24a	KnownJunction	0	766.30	1535.20	299.72	372.45	383.55	177.33	286.03
67	ER24a	ExonRegion	0	602.70	1302.57	281.68	366.17	353.21	163.83	255.57
68	E24a_E25a	KnownJunction	0	662.89	1079.15	307.01	336.17	391.92	190.79	291.43
69	ER25a	ExonRegion	0	724.27	1238.34	311.41	353.61	486.23	184.24	315.13
70	E25a_E27a	KnownJunction	0	857.93	1284.54	343.16	420.97	582.48	208.98	352.15
71	E25b_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER25b	ExonRegion	0	11.53	30.07	5.59	5.61	6.68	3.98	2.53
73	E26a_E27b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	ER26a	ExonRegion	0	0.77	0.00	0.00	0.00	0.00	0.00	0.00
75	E27_Ab	NovelBoundary	0	473.18	663.30	182.91	225.59	189.66	98.11	159.41
76	ER27a	ExonRegion	0	895.78	1345.02	370.14	437.68	537.97	204.92	363.22
77	ER27b	ExonRegion	0	1000.14	1568.79	401.77	474.20	630.24	226.55	409.37
78	E27a_E28a	KnownJunction	0	869.25	1509.90	331.80	427.90	623.72	205.07	417.19
79	ER28a	ExonRegion	0	912.21	1599.00	356.84	461.24	560.89	211.69	433.28
80	E28_Da	NovelBoundary	1	365.74	4.28	142.94	0.00	0.00	0.00	0.89
81	E28a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
82	E28b_E29a	KnownJunction	0	909.38	1464.21	345.29	433.54	528.65	235.22	392.90
83	ER28b	ExonRegion	0	901.38	1482.13	345.47	438.10	541.52	219.86	402.73
84	ER29a	ExonRegion	0	809.76	1384.20	291.39	373.68	539.33	202.54	348.27
85	E29a_E30a	KnownJunction	0	680.05	1269.80	251.54	327.99	459.81	157.31	292.05
86	ER30a	ExonRegion	0	784.69	1203.28	307.71	369.55	553.53	205.05	384.12
87	E30a_E31a	KnownJunction	0	757.37	1144.28	304.06	358.88	505.32	213.00	362.83
88	ER31a	ExonRegion	0	799.52	1267.00	353.01	376.69	515.52	223.43	388.30
89	E31a_E32a	KnownJunction	0	576.94	1139.13	276.23	337.34	448.56	165.14	318.32
90	E31a_E33a	NovelJunction	1	201.01	165.48	63.88	108.04	15.72	39.90	8.89
91	ER32a	ExonRegion	0	652.54	1260.39	285.34	359.72	417.30	186.91	356.53
92	E32a_E33a	KnownJunction	0	751.45	1317.80	294.36	373.04	470.60	195.83	461.77
93	ER33a	ExonRegion	0	1257.22	1557.03	439.99	501.78	634.58	262.34	414.12
94	E33a_E34a	KnownJunction	0	1291.67	1586.85	422.16	540.22	574.55	290.16	414.97
95	ER34a	ExonRegion	0	403.20	864.68	142.31	281.33	248.03	149.11	185.82
96	E34_Da	KnownBoundary	0	15.54	197.14	6.44	15.50	2.35	28.89	4.11
97	E34a_E35a	KnownJunction	0	1.03	0.00	0.00	1.68	0.00	0.00	0.89
98	E34a_E36a	KnownJunction	0	248.18	613.46	84.50	201.96	145.69	103.82	178.18
99	ER34b	ExonRegion	0	8.05	100.25	2.39	11.31	3.38	13.93	1.88
100	ER35a	ExonRegion	0	1.34	0.27	0.00	1.28	0.07	0.37	1.33
101	E35a_E36a	KnownJunction	0	0.97	1.02	0.00	0.00	0.00	1.07	0.82
102	ER36a	ExonRegion	0	231.28	646.52	77.11	241.47	105.32	144.23	126.07
103	E36_Da	KnownBoundary	0	76.41	77.40	27.36	98.99	19.87	33.39	7.01
104	E36a_E37a	KnownJunction	0	152.06	498.08	47.75	127.54	86.82	86.46	103.33
105	ER36b	ExonRegion	0	52.92	52.92	19.24	62.37	19.89	23.24	5.18
106	E36_Db	NovelBoundary	0	96.99	79.87	45.64	79.16	12.77	31.46	9.76
107	ER37a	ExonRegion	0	121.67	396.17	42.86	94.20	76.05	70.75	76.92
108	E37_Da	KnownBoundary	1	182.22	401.14	56.88	96.07	94.10	84.77	110.55
109	E37a_E38a	KnownJunction	0	2.45	0.00	0.56	0.00	5.35	0.00	0.00
110	ER37b	ExonRegion	0	180.49	295.24	58.87	97.81	96.94	49.58	68.68
111	E37_Db	NovelBoundary	0	135.59	313.10	18.35	79.65	13.39	39.64	22.20
112	E37b_E38a	KnownJunction	0	120.95	267.78	74.78	110.61	112.94	45.08	89.71
113	I37	Intron	0	178.93	107.25	59.86	48.41	51.19	24.19	22.84
114	I37_AR1	ActiveIntronRegion	0	179.04	107.31	59.90	48.43	51.22	24.20	22.85
115	ER38a	ExonRegion	0	313.30	470.64	119.13	192.41	180.63	92.79	119.24
116	E38a_E39a	KnownJunction	0	551.57	612.97	172.96	259.64	260.08	137.91	157.85
117	ER39a	ExonRegion	0	796.21	620.94	292.27	234.92	442.43	162.87	225.51
118	ER39b	ExonRegion	0	14.60	25.51	4.74	4.99	36.44	7.36	7.42
119	IG41_AR8	ActiveIntergenicRegion	0	0.00	0.00	0.00	3.34	5.27	18.69	0.00
120	IG41_AR9	ActiveIntergenicRegion	0	0.00	0.00	0.25	2.46	3.92	23.01	0.00
121	IG41_SR7	SilentIntergenicRegion	0	0.00	0.00	0.68	2.94	2.22	23.21	0.00
122	IG41_AR10	ActiveIntergenicRegion	0	0.00	0.13	0.05	2.10	2.41	12.99	0.00
123	IG41_SR8	SilentIntergenicRegion	0	0.00	0.65	0.00	0.89	0.70	8.85	0.00
124	IG41_SR9	SilentIntergenicRegion	0	0.23	0.19	0.23	0.17	10.21	0.43	0.00