Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PTPRK	Gene	0	402.79	245.07	166.48	186.47	151.69	160.95	246.32
2	368205	Transcript	0	0.40	0.00	0.24	0.01	0.77	0.00	0.02
3	368227	Transcript	0	0.72	0.20	0.32	0.08	0.08	0.45	0.13
4	368226	Transcript	0	0	0	0	0	0	0	0
5	368213	Transcript	0	0.69	0.00	0.48	2.81	0.66	0.86	0.00
6	368202	Transcript	1	4.11	57.40	2.83	3.16	0.52	10.24	1.16
7	368204	Transcript	0	3.91	2.43	0.81	2.57	0.91	2.06	0.42
8	368207	Transcript	0	0.00	0.00	0.00	0.00	1.11	0.00	0.00
9	368210	Transcript	0	41.21	20.23	21.10	19.70	27.23	8.92	20.44
10	392449	Transcript	0	3.22	6.19	2.00	1.54	0.85	3.87	1.18
11	392448	Transcript	0	0.19	0.00	0.00	0.13	0.00	0.00	0.20
12	368215	Transcript	0	0.76	0.00	0.33	0.02	0.00	0.00	0.00
13	ER1a	ExonRegion	0	17.22	27.68	4.02	12.08	8.24	6.20	5.70
14	E1_Ab	KnownBoundary	1	85.40	102.25	16.89	44.73	28.49	19.54	22.60
15	ER1b	ExonRegion	1	71.03	138.76	14.49	63.23	10.48	41.82	20.16
16	E1_Ac	KnownBoundary	1	41.77	251.29	14.90	78.10	5.30	66.38	17.54
17	ER1c	ExonRegion	1	130.52	305.78	38.84	127.05	10.72	115.96	39.96
18	E1_Ad	KnownBoundary	0	320.95	345.73	99.36	168.37	32.92	178.19	105.05
19	ER1d	ExonRegion	0	161.30	481.26	64.04	228.55	40.94	199.57	90.15
20	E1a_E2a	KnownJunction	1	1.03	27.87	0.00	1.27	0.00	1.66	0.64
21	E1a_E3b	KnownJunction	0	7.83	4.86	1.62	5.04	1.82	4.13	0.83
22	E1a_E5a	KnownJunction	0	145.44	409.36	75.95	167.18	33.91	180.12	94.62
23	I1	Intron	1	41.97	81.61	16.03	17.50	0.90	13.53	1.36
24	I1_AR1	ActiveIntronRegion	1	27.96	77.26	12.39	13.05	0.91	11.97	1.54
25	I1_SR1	SilentIntronRegion	1	52.46	79.48	18.80	18.63	1.02	12.66	1.21
26	I1_AR2	ActiveIntronRegion	1	21.32	95.38	10.55	18.95	0.46	18.70	1.72
27	E2_Aa	NovelBoundary	1	37.17	173.37	12.11	26.85	0.00	48.78	1.40
28	ER2a	ExonRegion	1	7.19	86.93	5.65	5.04	1.04	18.82	1.67
29	E2_Da	NovelBoundary	1	20.53	140.50	7.20	22.59	4.15	45.05	4.66
30	I2_AR1	ActiveIntronRegion	1	15.73	61.83	7.42	7.37	0.73	16.09	1.40
31	ER3a	ExonRegion	0	3.24	4.18	1.96	0.55	0.99	0.41	0.30
32	ER3b	ExonRegion	0	25.56	22.25	6.65	12.63	3.88	8.10	3.18
33	E3a_E5a	KnownJunction	0	4.06	9.54	2.33	3.31	1.18	11.12	2.84
34	ER4a	ExonRegion	0	0.00	0.00	0.00	0.10	0.00	0.00	0.00
35	ER5a	ExonRegion	0	313.53	589.13	158.52	297.75	64.39	282.41	208.15
36	E5a_E7a	KnownJunction	0	315.72	453.87	186.30	222.09	89.08	237.71	189.63
37	ER6a	ExonRegion	0	0.00	0.00	0.00	0.53	0.00	0.00	0.00
38	ER7a	ExonRegion	0	473.28	573.84	230.19	329.87	129.67	273.42	263.40
39	E7_Da	NovelBoundary	1	265.50	95.86	98.09	38.96	11.16	27.01	21.73
40	E7a_E8a	KnownJunction	0	472.18	398.80	181.55	244.42	162.48	174.06	274.55
41	I7_AR1	ActiveIntronRegion	0	65.45	57.24	27.57	24.02	9.79	16.89	11.67
42	ER8a	ExonRegion	0	525.17	552.66	255.10	311.41	168.56	246.83	360.45
43	E8a_E10a	KnownJunction	0	542.82	707.44	280.29	351.83	163.17	313.69	416.43
44	ER9a	ExonRegion	0	1.52	0.00	0.66	0.03	0.00	0.00	0.00
45	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER10a	ExonRegion	0	652.24	707.78	302.91	381.18	223.96	290.16	429.33
47	E10a_E14a	KnownJunction	0	636.87	625.73	342.06	353.54	173.56	274.62	442.05
48	ER10b	ExonRegion	0	0.77	0.00	0.00	0.00	0.00	0.00	0.79
49	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER13a	ExonRegion	0	2.36	4.86	1.72	0.75	0.38	0.08	0.40
52	ER14a	ExonRegion	0	582.58	532.70	285.19	298.11	189.94	255.71	375.09
53	E14a_E15a	KnownJunction	0	601.10	392.34	249.05	266.33	131.33	208.56	317.94
54	ER15a	ExonRegion	0	543.02	434.14	271.08	282.84	184.49	223.31	368.74
55	E15a_E16a	KnownJunction	0	584.35	361.39	310.80	281.12	185.41	216.94	432.49
56	ER16a	ExonRegion	0	450.49	367.35	232.38	251.36	187.73	198.02	396.02
57	E16a_E17a	KnownJunction	0	493.96	329.76	285.62	230.30	244.73	203.36	424.51
58	ER17a	ExonRegion	0	460.43	344.81	269.45	246.41	182.17	211.86	422.82
59	E17a_E18a	KnownJunction	0	449.13	311.08	259.93	289.50	167.09	238.22	451.41
60	ER18a	ExonRegion	0	481.86	318.36	256.58	272.22	218.69	225.36	468.71
61	E18a_E19a	KnownJunction	0	389.41	332.36	173.55	261.40	180.78	195.72	491.97
62	E19_Aa	NovelBoundary	1	137.86	0.00	60.40	0.00	0.00	0.00	0.00
63	ER19a	ExonRegion	0	456.05	303.77	208.23	253.18	173.22	204.06	457.30
64	E19a_E20a	KnownJunction	0	534.08	307.72	247.31	297.68	361.56	227.91	448.17
65	ER20a	ExonRegion	0	408.61	224.80	161.58	193.34	145.11	141.67	291.60
66	E20a_E21a	KnownJunction	0	358.42	171.11	122.74	167.96	164.78	115.69	240.71
67	ER21a	ExonRegion	0	457.45	214.21	177.47	201.37	178.69	152.19	321.20
68	E21a_E22a	KnownJunction	0	375.87	160.39	139.91	143.53	158.86	117.46	238.80
69	E21a_E22b	KnownJunction	0	41.21	20.23	21.10	19.70	27.23	8.92	20.44
70	ER22a	ExonRegion	0	432.25	203.49	166.64	176.45	196.59	144.67	293.45
71	ER22b	ExonRegion	0	658.35	234.97	231.82	234.90	210.44	190.13	306.53
72	E22a_E23a	KnownJunction	0	0.75	0.00	0.73	0.00	2.26	0.00	0.00
73	E22a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	1.11	0.00	0.00
74	E22a_E25a	KnownJunction	0	685.52	240.36	255.58	238.81	179.97	222.28	294.20
75	ER23a	ExonRegion	0	0.68	0.00	0.48	0.06	1.00	0.00	0.11
76	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
77	E24a_E25a	KnownJunction	0	2.62	1.60	0.00	0.00	3.41	0.00	0.00
78	ER24a	ExonRegion	0	1.66	1.21	0.00	0.00	2.59	0.00	0.07
79	ER25a	ExonRegion	0	513.33	239.30	199.60	213.23	225.16	191.11	315.84
80	E25a_E26a	KnownJunction	0	0.92	1.23	0.00	0.00	3.14	3.14	7.57
81	E25a_E28a	KnownJunction	0	453.88	211.51	154.08	183.87	175.78	161.17	222.37
82	ER26a	ExonRegion	0	1.32	1.05	0.23	3.74	3.08	4.97	8.38
83	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	E26a_E28a	KnownJunction	0	1.03	2.31	0.62	4.82	3.16	4.45	7.80
85	ER27a	ExonRegion	0	0.55	0.00	0.00	0.00	0.58	0.00	0.00
86	ER28a	ExonRegion	0	388.12	221.92	159.53	197.78	197.60	156.92	277.87
87	E28a_E29a	KnownJunction	0	456.65	230.09	182.55	195.22	226.49	178.14	319.95
88	ER29a	ExonRegion	0	597.05	256.76	229.44	217.98	221.56	214.16	340.62
89	E29a_E30a	KnownJunction	0	552.67	257.72	227.99	198.06	189.36	210.27	321.30
90	ER30a	ExonRegion	0	488.82	217.81	212.49	188.26	194.35	172.74	324.46
91	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	3.01	1.18	1.37	0.00
92	E30a_E32a	KnownJunction	0	400.32	147.88	163.07	134.70	225.00	114.62	264.27
93	E30b_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
94	ER30b	ExonRegion	0	1.43	0.40	0.63	0.17	0.16	0.90	0.27
95	E31a_E32a	KnownJunction	0	1.03	0.00	0.76	1.68	0.00	0.00	0.00
96	ER31a	ExonRegion	0	1.02	0.00	0.68	3.74	0.81	1.23	0.00
97	ER32a	ExonRegion	0	531.36	181.01	225.51	164.43	218.35	147.55	300.58
98	E32a_E33a	KnownJunction	0	443.85	149.51	181.27	137.92	198.92	134.91	212.94
99	ER33a	ExonRegion	0	568.85	207.54	221.99	183.65	214.14	148.88	298.62
100	E33a_E34a	KnownJunction	0	562.38	193.65	223.44	196.25	189.79	137.62	286.44
101	ER34a	ExonRegion	0	569.94	228.35	223.19	211.32	218.83	157.88	350.78
102	E34a_E35a	KnownJunction	0	488.21	199.69	183.31	159.35	200.79	123.31	295.57
103	ER35a	ExonRegion	0	475.50	212.73	164.21	190.86	207.19	146.62	298.17
104	E35a_E36a	KnownJunction	0	451.93	210.91	167.53	192.13	229.81	156.16	289.21
105	ER36a	ExonRegion	0	463.16	251.82	197.44	220.78	211.14	196.01	323.41
106	E36a_E37a	KnownJunction	0	560.83	260.14	222.74	228.70	219.95	234.95	367.87
107	ER37a	ExonRegion	0	471.27	243.41	212.53	208.51	208.87	190.99	326.40
108	E37a_E38a	KnownJunction	0	440.81	201.16	203.18	204.00	209.64	174.65	331.76
109	ER38a	ExonRegion	0	330.47	207.02	156.55	212.66	174.51	182.44	294.19
110	E38a_E39a	KnownJunction	0	295.26	196.64	145.36	229.60	233.09	216.86	344.04
111	ER39a	ExonRegion	0	285.95	203.08	133.14	202.56	176.23	170.82	282.26
112	E39a_E40a	KnownJunction	0	289.49	255.10	119.39	169.10	200.12	141.61	281.50
113	ER40a	ExonRegion	0	313.65	201.22	134.45	176.60	198.60	158.65	276.26
114	E40a_E41a	KnownJunction	0	255.41	177.46	106.90	164.98	154.89	138.72	236.35
115	ER41a	ExonRegion	0	266.45	186.11	108.69	178.27	173.85	166.41	248.38
116	E41a_E42a	KnownJunction	0	201.03	187.00	82.51	193.70	154.02	156.51	170.54
117	ER42a	ExonRegion	0	306.46	213.52	116.39	207.35	160.68	186.20	249.55
118	E42a_E43a	KnownJunction	0	350.52	209.30	123.14	184.79	138.94	187.92	192.28
119	ER43a	ExonRegion	0	326.92	188.09	121.16	180.10	139.35	173.46	213.90
120	E43_Da	KnownBoundary	0	322.57	169.32	124.12	164.14	127.60	139.17	250.14
121	ER43b	ExonRegion	0	341.64	101.46	137.87	97.54	111.91	100.50	182.99
122	E43_Db	KnownBoundary	0	441.37	121.98	162.10	113.02	71.83	118.86	155.64
123	ER43c	ExonRegion	1	521.21	110.96	159.62	134.90	164.28	138.12	153.28