Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MICAL1	Gene	0	73.50	29.32	19.18	17.67	108.74	15.82	85.14
2	358807	Transcript	0	0	0	0	0	0	0	0
3	358577	Transcript	0	2.52	1.55	0.00	3.17	15.51	1.66	7.28
4	368952	Transcript	0	11.40	4.98	5.68	3.43	8.42	2.18	4.00
5	368957	Transcript	0	1.77	1.41	1.40	0.49	1.69	1.44	0.79
6	335266	Transcript	0	11.24	4.80	4.72	0.73	12.78	0.66	6.68
7	IG31_AR6	ActiveIntergenicRegion	0	6.47	7.85	4.84	5.08	2.25	5.98	0.75
8	IG31_SR3	SilentIntergenicRegion	0	4.91	7.51	4.17	5.44	2.12	6.73	1.70
9	ER1a	ExonRegion	0	0.89	0.52	0.22	0.43	1.58	0.27	0.70
10	E1a_E4a	KnownJunction	0	10.97	2.55	1.15	1.27	29.00	3.22	14.98
11	ER2a	ExonRegion	0	0.00	0.00	0.00	0.10	0.07	0.03	0.00
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER3a	ExonRegion	0	7.00	5.29	4.14	3.12	9.72	4.40	3.86
14	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	I3	Intron	0	23.99	6.71	10.42	9.47	12.99	4.64	6.97
16	I3_AR2	ActiveIntronRegion	0	25.51	7.05	10.81	10.00	13.77	4.75	7.42
17	E4_Aa	NovelBoundary	0	12.58	11.93	10.09	5.91	10.05	1.45	5.56
18	ER4a	ExonRegion	0	30.96	29.83	8.11	13.19	47.42	12.38	48.36
19	E4_Da	NovelBoundary	0	0.00	9.90	2.59	1.68	0.00	1.53	0.64
20	E4a_E5a	KnownJunction	0	31.79	29.24	6.67	9.13	54.70	13.88	49.43
21	E5_Aa	NovelBoundary	0	1.94	9.27	1.95	4.74	0.99	1.39	0.59
22	ER5a	ExonRegion	0	64.39	37.50	17.18	21.22	93.54	15.00	93.23
23	E5_Da	NovelBoundary	1	5.49	10.19	4.02	4.33	2.21	0.00	4.59
24	E5a_E6a	KnownJunction	0	61.17	38.54	16.05	18.23	90.23	11.34	64.00
25	I5_SR1	SilentIntronRegion	0	1.56	7.81	2.51	2.58	1.84	1.23	2.05
26	E6_Aa	NovelBoundary	1	4.62	14.19	10.61	11.11	5.12	2.57	1.91
27	ER6a	ExonRegion	0	125.93	36.11	26.88	28.83	151.87	25.09	102.63
28	E6_Da	NovelBoundary	0	8.73	14.37	13.52	13.76	27.02	7.88	11.85
29	E6a_E7a	KnownJunction	0	191.80	31.76	28.51	21.00	201.07	24.84	149.30
30	E7_Aa	NovelBoundary	0	16.59	11.06	9.37	9.10	21.88	7.45	20.01
31	ER7a	ExonRegion	1	261.29	45.11	39.36	40.40	254.71	29.59	134.70
32	E7_Da	NovelBoundary	0	14.24	14.08	11.90	5.31	11.76	12.01	8.38
33	E7a_E8a	KnownJunction	1	469.50	46.00	64.81	47.68	253.42	52.02	197.31
34	E8_Aa	NovelBoundary	0	20.50	8.88	12.29	14.98	9.82	13.67	11.44
35	ER8a	ExonRegion	0	262.81	47.92	44.72	41.25	257.89	29.43	167.57
36	E8_Da	KnownBoundary	1	56.91	12.51	18.21	10.05	59.27	6.67	20.16
37	E8a_E8b	KnownJunction	1	141.28	13.66	14.15	12.06	251.14	11.42	150.59
38	ER8b	ExonRegion	1	61.39	24.59	29.93	17.38	40.70	8.67	20.13
39	E8_Ab	KnownBoundary	1	80.70	26.09	28.41	24.35	55.00	11.98	28.30
40	ER8c	ExonRegion	0	104.75	27.77	27.07	31.14	210.11	15.09	126.28
41	E8_Db	NovelBoundary	0	2.04	4.97	5.48	13.84	12.61	3.91	3.80
42	E8b_E9a	KnownJunction	0	43.56	20.07	14.54	11.62	76.35	12.17	97.20
43	E8b_E10a	KnownJunction	0	2.52	1.55	0.00	3.17	15.51	1.66	7.28
44	E9_Aa	NovelBoundary	0	4.76	11.11	7.29	7.31	9.43	6.03	3.02
45	ER9a	ExonRegion	0	61.02	21.90	14.99	15.62	100.35	13.04	96.30
46	E9a_E10a	KnownJunction	0	89.07	20.68	12.42	15.66	87.02	9.00	97.40
47	I9	Intron	0	3.90	11.17	6.78	4.43	6.16	5.19	5.01
48	I9_AR1	ActiveIntronRegion	0	3.93	11.26	6.83	4.47	6.21	5.24	5.05
49	E10_Aa	NovelBoundary	0	4.62	11.51	9.84	9.81	8.48	6.81	6.75
50	ER10a	ExonRegion	0	63.18	29.05	14.10	17.76	94.22	17.19	117.13
51	E10_Da	NovelBoundary	0	9.30	11.72	8.33	4.39	7.56	6.81	4.50
52	E10a_E11a	KnownJunction	1	68.28	29.98	10.92	17.93	121.26	8.82	147.79
53	I10	Intron	0	3.65	8.92	6.06	3.02	4.61	3.93	3.85
54	I10_AR1	ActiveIntronRegion	0	3.69	9.02	6.12	3.04	4.66	3.94	3.89
55	ER11a	ExonRegion	0	77.88	38.44	17.10	15.52	124.34	10.89	132.49
56	E11_Da	NovelBoundary	1	10.58	5.44	8.62	20.89	14.68	8.25	9.36
57	E11a_E12a	KnownJunction	0	41.98	31.84	12.42	11.16	97.14	7.75	93.35
58	E12_Aa	NovelBoundary	0	4.96	13.35	7.73	7.99	7.42	5.71	4.17
59	ER12a	ExonRegion	0	52.13	35.60	16.01	11.39	110.39	9.14	129.44
60	E12a_E14a	KnownJunction	1	57.51	37.02	13.80	11.05	105.47	3.99	118.58
61	ER13a	ExonRegion	0	3.54	2.82	2.79	0.98	3.39	2.88	1.58
62	E13_Da	NovelBoundary	0	4.19	12.24	5.82	3.01	0.00	2.76	3.80
63	E13a_E14b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E14_Ab	NovelBoundary	1	24.12	15.40	6.06	5.63	28.22	1.10	43.34
65	ER14a	ExonRegion	1	52.71	34.14	12.53	11.10	103.90	3.68	111.71
66	ER14b	ExonRegion	1	59.04	31.38	18.10	23.01	119.15	9.10	119.20
67	E14_Da	NovelBoundary	1	12.47	18.02	9.34	12.30	4.03	1.66	2.75
68	E14a_E15a	KnownJunction	0	55.56	21.02	19.43	13.22	95.67	7.50	109.02
69	I14	Intron	0	10.27	8.42	10.34	8.40	6.45	4.69	6.95
70	I14_AR1	ActiveIntronRegion	0	10.32	8.46	10.40	8.44	6.49	4.71	6.99
71	E15_Aa	NovelBoundary	0	3.40	4.52	7.31	14.28	10.77	4.61	5.36
72	ER15a	ExonRegion	0	79.19	37.64	24.04	20.88	152.40	12.39	141.94
73	E15_Da	NovelBoundary	1	20.90	12.98	6.77	12.62	14.68	5.79	7.40
74	E15a_E16a	KnownJunction	1	58.92	35.97	25.32	12.81	105.61	6.41	148.27
75	E16_Aa	NovelBoundary	0	12.73	11.24	6.84	7.61	6.87	1.05	6.12
76	ER16a	ExonRegion	1	79.44	33.02	19.52	11.78	138.20	7.30	129.33
77	E16_Da	NovelBoundary	0	18.56	3.86	13.03	7.29	6.73	2.76	8.04
78	E16a_E17a	KnownJunction	1	72.40	24.51	7.36	10.76	140.81	4.88	104.71
79	I16	Intron	0	14.53	6.07	12.15	9.98	11.81	2.45	7.40
80	I16_AR1	ActiveIntronRegion	0	14.71	6.16	12.31	10.10	11.94	2.48	7.50
81	E17_Aa	NovelBoundary	0	23.88	8.33	7.83	17.12	11.64	5.15	14.92
82	ER17a	ExonRegion	1	75.42	25.71	5.82	11.37	158.02	5.43	137.55
83	E17_Da	NovelBoundary	0	17.54	12.22	9.27	13.82	10.35	4.26	3.84
84	E17a_E18a	KnownJunction	1	59.42	26.82	8.69	8.97	163.70	4.58	134.56
85	E17a_E19a	NovelJunction	0	1.03	0.00	0.80	3.28	13.67	0.00	7.17
86	I17	Intron	0	20.91	15.72	10.53	10.21	14.67	4.64	8.52
87	I17_AR1	ActiveIntronRegion	1	21.07	15.83	10.60	10.27	14.77	4.68	8.59
88	E18_Aa	NovelBoundary	1	35.72	21.25	13.81	10.13	18.03	6.89	11.72
89	ER18a	ExonRegion	0	82.13	25.12	24.99	11.03	183.51	8.60	160.55
90	E18_Da	NovelBoundary	1	6.59	15.08	6.55	4.96	0.00	0.00	3.77
91	E18a_E19a	KnownJunction	0	72.47	20.57	23.28	9.21	120.89	9.94	127.92
92	I18	Intron	1	2.11	10.13	2.42	0.00	2.25	0.73	0.00
93	I18_AR1	ActiveIntronRegion	1	2.13	10.25	2.45	0.00	2.28	0.75	0.00
94	E19_Aa	NovelBoundary	0	6.58	8.28	8.77	7.64	3.00	5.39	4.96
95	ER19a	ExonRegion	0	82.78	48.54	21.39	22.18	147.86	20.82	137.22
96	E19_Da	NovelBoundary	1	41.34	18.05	13.55	8.21	36.35	14.02	69.08
97	E19a_E19b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
98	E19b_E20a	KnownJunction	0	98.25	29.50	26.97	12.11	225.76	21.15	192.57
99	ER19b	ExonRegion	0	82.99	32.32	24.39	18.21	186.75	20.60	155.97
100	ER19c	ExonRegion	0	83.14	33.53	26.28	18.70	189.99	19.13	157.05
101	I19	Intron	0	13.09	12.59	13.69	8.49	2.88	2.78	4.26
102	I19_SR1	SilentIntronRegion	0	13.17	12.67	13.77	8.55	2.89	2.79	4.28
103	E20_Aa	NovelBoundary	0	14.09	7.86	9.66	7.31	4.56	0.00	2.34
104	E20_Ab	NovelBoundary	1	41.62	38.65	18.75	15.98	108.99	7.18	72.49
105	ER20a	ExonRegion	0	86.19	43.03	29.18	16.52	189.17	21.76	161.85
106	ER20b	ExonRegion	0	85.76	47.14	30.75	15.71	182.70	25.75	171.35
107	ER20c	ExonRegion	0	74.97	46.44	30.02	17.54	135.15	22.12	151.09
108	E20_Db	NovelBoundary	0	53.16	24.20	29.01	12.38	67.25	14.31	81.16
109	E20_Dc	NovelBoundary	0	10.03	13.61	10.84	7.64	19.27	3.89	5.13
110	E20c_E22b	KnownJunction	1	79.91	25.69	17.19	13.49	125.85	31.03	154.51
111	ER20d	ExonRegion	1	78.91	41.00	23.79	16.05	118.44	30.88	142.85
112	E21_Aa	NovelBoundary	1	21.83	24.85	21.99	11.78	20.24	0.00	8.81
113	ER21a	ExonRegion	0	6.42	2.39	3.02	0.00	6.28	0.00	1.85
114	E21a_E22a	KnownJunction	0	9.93	2.76	5.04	0.00	12.47	0.00	3.68
115	E22_Ab	NovelBoundary	1	15.27	12.77	5.17	3.66	7.54	1.37	8.17
116	ER22a	ExonRegion	0	17.39	9.26	6.10	2.18	19.59	1.99	14.50
117	ER22b	ExonRegion	0	70.23	30.66	19.34	12.03	110.52	22.03	90.65
118	E22_Da	NovelBoundary	0	13.50	5.54	11.87	4.12	5.39	1.58	7.32
119	E22a_E23a	KnownJunction	0	39.81	23.33	10.35	10.40	107.73	21.52	68.81
120	I22	Intron	1	16.87	11.77	8.55	5.88	8.26	2.03	7.08
121	I22_AR1	ActiveIntronRegion	1	16.98	11.84	8.60	5.93	8.32	2.04	7.12
122	E23_Aa	NovelBoundary	0	28.06	31.68	18.61	9.37	22.36	7.80	29.42
123	ER23a	ExonRegion	0	110.17	47.38	22.02	21.02	199.76	34.03	131.07
124	E23_Da	NovelBoundary	1	10.65	5.18	9.94	9.73	1.87	0.00	1.98
125	E23a_E24a	KnownJunction	1	157.37	45.74	29.73	24.79	243.95	48.03	152.44
126	I23	Intron	0	11.05	6.11	9.33	6.67	2.57	1.55	2.54
127	I23_AR1	ActiveIntronRegion	0	11.14	6.16	9.41	6.73	2.59	1.56	2.56
128	E24_Aa	NovelBoundary	1	10.71	9.56	20.20	4.36	1.18	12.94	2.82
129	ER24a	ExonRegion	0	142.30	52.78	29.11	38.04	239.01	40.41	146.91
130	E24_Da	NovelBoundary	1	8.56	9.56	11.04	3.03	0.00	2.84	1.46
131	E24a_E25a	KnownJunction	0	159.42	49.71	22.60	40.12	284.33	41.27	158.59
132	E25_Aa	NovelBoundary	1	6.98	14.00	10.55	5.61	1.18	1.13	1.38
133	ER25a	ExonRegion	0	135.51	42.60	25.59	36.86	268.37	45.23	148.85
134	E25_Da	NovelBoundary	1	7.84	17.76	15.98	4.01	0.88	0.00	2.34
135	E25a_E26a	KnownJunction	1	134.80	46.40	24.46	18.26	249.66	44.76	135.46
136	I25	Intron	1	6.08	9.61	9.02	5.19	1.03	1.38	1.27
137	I25_SR1	SilentIntronRegion	1	6.55	10.18	9.82	5.71	1.16	1.56	1.43
138	E26_Aa	NovelBoundary	1	7.39	13.19	14.34	11.70	0.97	2.14	1.26
139	ER26a	ExonRegion	0	138.89	53.89	27.94	30.34	220.07	48.24	145.42
140	E26_Da	NovelBoundary	1	13.77	9.88	9.01	12.92	2.19	0.00	3.45
141	E26a_E27a	KnownJunction	0	111.52	41.64	20.10	37.14	202.06	28.94	139.85
142	E27_Aa	NovelBoundary	0	6.01	11.87	7.11	4.39	2.01	2.30	7.47
143	ER27a	ExonRegion	0	86.14	43.70	21.04	25.88	205.43	40.36	126.85
144	E27_Da	NovelBoundary	1	16.96	13.79	15.18	8.40	0.00	5.55	4.54
145	E27a_E28a	KnownJunction	1	85.02	40.59	18.19	19.23	178.11	38.89	88.20
146	I27	Intron	0	7.01	7.80	7.89	4.26	0.87	2.21	1.75
147	I27_SR1	SilentIntronRegion	0	7.07	7.86	7.95	4.30	0.87	2.23	1.76
148	ER28a	ExonRegion	0	41.34	25.50	16.45	15.51	78.09	15.88	55.68
149	IG30_SR2	SilentIntergenicRegion	0	8.67	7.87	8.66	4.78	0.85	0.74	1.20