Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DOPEY1	Gene	0	55.06	55.80	63.27	69.15	48.97	41.00	34.51
2	349129	Transcript	0	41.03	30.12	47.31	54.40	40.43	17.78	25.00
3	237163	Transcript	0	0	0	0	0	0	0	0
4	369739	Transcript	1	39.91	32.87	30.33	27.60	48.85	61.63	28.62
5	ER1a	ExonRegion	0	6.93	13.73	12.74	14.48	6.21	6.84	6.30
6	E1a_E2b	KnownJunction	1	4.17	7.09	9.92	19.34	0.97	2.65	4.16
7	E1a_E3a	NovelJunction	1	3.54	10.85	2.43	9.10	3.97	0.00	0.00
8	ER2a	ExonRegion	0	2.82	2.83	4.97	5.82	0.27	1.23	1.80
9	ER2b	ExonRegion	1	8.53	11.91	7.89	21.69	1.87	3.69	4.35
10	E2a_E3a	KnownJunction	1	10.23	23.17	14.36	26.55	4.52	1.02	4.70
11	ER3a	ExonRegion	1	26.46	38.97	31.20	38.67	10.80	11.94	11.93
12	E3a_E4a	KnownJunction	1	35.02	39.38	39.22	39.07	13.92	7.16	8.73
13	ER4a	ExonRegion	1	47.35	43.41	55.29	49.19	17.91	8.80	16.69
14	E4a_E5a	KnownJunction	1	51.64	45.34	53.04	62.82	17.54	5.31	16.27
15	E5_Aa	NovelBoundary	1	25.69	1.55	24.40	0.00	0.00	4.26	0.56
16	ER5a	ExonRegion	1	48.43	61.55	55.22	60.53	21.62	11.53	20.86
17	E5a_E6a	KnownJunction	1	36.57	59.58	48.69	64.53	25.20	10.99	17.56
18	ER6a	ExonRegion	1	33.51	52.87	47.85	62.53	30.02	13.07	25.85
19	E6_Da	NovelBoundary	0	11.55	5.49	19.79	1.38	0.88	2.73	4.96
20	E6a_E7a	KnownJunction	1	18.13	27.95	43.70	53.75	24.00	6.86	18.70
21	E6a_E8a	NovelJunction	0	6.53	16.89	15.97	31.10	3.20	10.51	5.63
22	ER7a	ExonRegion	1	24.41	44.00	43.66	47.80	31.90	12.37	28.86
23	E7a_E8a	KnownJunction	0	20.78	42.30	29.93	44.67	32.07	16.19	15.78
24	ER8a	ExonRegion	0	28.19	52.81	49.52	74.11	26.45	22.79	24.00
25	E8a_E9a	KnownJunction	1	34.50	49.97	56.36	97.18	22.55	26.21	27.03
26	E8a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E9_Ab	NovelBoundary	0	27.97	51.57	51.55	72.74	32.57	29.13	21.83
28	ER9a	ExonRegion	0	34.83	56.62	61.11	91.03	28.06	30.21	26.91
29	ER9b	ExonRegion	0	30.51	62.33	66.74	75.32	30.46	25.07	25.88
30	E9a_E10a	KnownJunction	1	31.74	58.45	71.78	52.83	19.25	14.55	27.53
31	ER10a	ExonRegion	0	42.79	60.54	75.01	69.33	25.50	21.45	26.08
32	E10a_E11a	KnownJunction	1	51.52	47.58	74.96	54.75	35.34	14.90	19.26
33	ER11a	ExonRegion	0	46.94	50.60	70.83	60.51	33.24	17.54	29.18
34	E11a_E12a	KnownJunction	0	43.51	31.37	62.21	65.29	23.35	19.11	21.78
35	ER12a	ExonRegion	1	43.30	37.70	69.19	59.60	27.20	16.67	24.86
36	E12a_E13a	KnownJunction	1	23.37	32.24	39.78	60.87	28.40	16.59	20.59
37	ER13a	ExonRegion	0	31.17	45.26	45.84	48.97	27.51	15.27	24.13
38	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E13a_E15a	KnownJunction	1	36.78	40.75	56.32	51.12	18.60	10.69	29.22
40	E14a_E15a	KnownJunction	0	1.03	0.00	0.00	1.16	0.00	0.00	0.00
41	ER14a	ExonRegion	0	0.77	0.00	0.00	0.50	0.00	0.00	0.00
42	ER15a	ExonRegion	1	50.86	42.50	60.74	55.20	30.78	13.74	22.05
43	E15a_E16a	KnownJunction	1	107.95	48.68	78.06	78.54	45.85	14.12	23.46
44	ER16a	ExonRegion	1	69.48	52.90	63.51	75.00	34.06	16.41	22.36
45	E16a_E17a	KnownJunction	1	29.54	42.01	32.88	53.32	25.31	12.44	26.15
46	ER17a	ExonRegion	0	35.49	48.02	40.58	70.35	35.28	26.57	28.85
47	E17a_E18a	KnownJunction	0	39.35	32.24	50.51	56.27	42.90	18.12	19.06
48	ER18a	ExonRegion	0	47.67	47.31	68.53	64.77	45.09	20.52	34.03
49	E18a_E19a	KnownJunction	1	55.31	53.33	73.50	56.95	42.99	8.95	30.77
50	ER19a	ExonRegion	1	61.47	40.51	85.28	66.93	45.16	15.22	30.87
51	E19a_E20a	KnownJunction	0	55.53	44.35	50.58	56.81	50.14	16.72	31.83
52	ER20a	ExonRegion	1	48.75	40.71	60.32	59.39	43.50	13.66	34.84
53	E20a_E21a	KnownJunction	0	52.01	45.45	68.65	59.33	41.91	19.27	37.72
54	ER21a	ExonRegion	0	51.87	45.82	66.22	63.13	46.46	27.12	33.97
55	E21a_E22a	KnownJunction	0	108.17	73.03	99.57	77.78	114.62	26.48	46.99
56	ER22a	ExonRegion	0	116.89	80.70	116.99	104.37	88.06	30.03	51.85
57	E22a_E23a	KnownJunction	1	137.81	77.53	124.56	105.06	110.98	26.83	53.30
58	ER23a	ExonRegion	0	114.62	76.54	110.78	102.61	98.85	30.09	49.16
59	E23a_E24a	KnownJunction	0	102.03	73.30	103.57	130.15	104.48	39.93	45.98
60	ER24a	ExonRegion	0	92.49	61.55	88.05	89.18	89.28	33.38	41.20
61	E24a_E25a	KnownJunction	0	62.35	51.81	74.06	85.36	72.09	33.79	23.60
62	ER25a	ExonRegion	0	67.70	55.06	76.49	79.06	62.95	30.28	37.66
63	E25a_E26a	KnownJunction	0	48.00	41.72	60.31	60.55	54.75	18.76	29.24
64	ER26a	ExonRegion	0	42.90	31.56	53.40	45.47	55.89	14.36	31.15
65	E26a_E27a	KnownJunction	0	31.26	20.36	42.87	25.41	38.68	14.58	25.12
66	E26a_E28a	KnownJunction	0	0.90	0.00	4.63	4.55	8.23	0.00	1.56
67	I26	Intron	0	4.48	4.44	2.74	3.35	0.93	10.07	1.81
68	I26_AR1	ActiveIntronRegion	0	4.83	4.95	2.66	2.94	1.08	10.78	1.95
69	ER27a	ExonRegion	0	36.87	27.21	52.11	39.45	39.47	19.98	24.45
70	E27a_E28a	KnownJunction	0	35.82	21.49	42.88	31.53	37.78	9.51	34.91
71	I27	Intron	0	3.10	6.77	2.45	5.46	1.10	13.72	3.01
72	I27_SR1	SilentIntronRegion	1	2.30	0.00	0.00	0.00	1.71	8.81	1.20
73	I27_AR1	ActiveIntronRegion	1	3.24	6.59	3.95	3.79	1.61	19.58	4.08
74	I27_AR2	ActiveIntronRegion	1	4.79	9.14	5.42	6.35	1.54	18.51	2.70
75	I27_AR3	ActiveIntronRegion	0	2.42	13.19	5.42	8.19	1.62	20.49	4.05
76	I27_SR2	SilentIntronRegion	0	3.11	7.38	2.15	6.45	0.88	12.27	2.85
77	E28_Aa	NovelBoundary	0	3.15	15.11	5.06	13.87	0.00	30.28	2.06
78	ER28a	ExonRegion	0	55.12	32.51	65.50	45.69	46.50	17.37	32.33
79	E28_Da	NovelBoundary	1	1.55	22.04	2.90	10.57	0.00	37.28	5.10
80	E28a_E29a	KnownJunction	0	53.96	41.22	72.83	59.09	60.74	27.93	26.43
81	I28	Intron	0	2.03	4.58	0.98	3.33	0.29	13.09	1.80
82	I28_SR1	SilentIntronRegion	0	2.05	4.63	0.99	3.37	0.30	13.26	1.82
83	E29_Aa	NovelBoundary	1	3.69	16.71	8.39	16.47	0.00	37.49	4.82
84	ER29a	ExonRegion	0	60.16	64.47	72.05	77.50	56.75	93.29	34.54
85	E29_Da	KnownBoundary	1	7.93	28.32	9.40	25.60	2.17	61.02	6.16
86	E29a_E30a	KnownJunction	1	65.84	27.09	66.02	91.54	60.03	24.47	43.14
87	E29a_E31a	NovelJunction	0	0.87	11.90	3.15	6.72	1.94	4.77	0.00
88	ER29b	ExonRegion	1	2.14	5.58	3.24	6.47	1.14	17.51	2.07
89	E29b_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
90	ER30a	ExonRegion	0	53.10	34.11	66.19	75.75	57.50	24.46	40.96
91	E30a_E31a	KnownJunction	0	46.03	34.21	55.76	71.49	70.82	23.99	35.47
92	I30_AR5	ActiveIntronRegion	1	3.07	1.21	3.39	4.36	0.81	8.34	1.35
93	I30_AR6	ActiveIntronRegion	0	1.94	1.83	3.29	3.08	0.14	10.29	1.20
94	E31_Aa	NovelBoundary	1	5.57	21.75	5.62	15.60	0.00	42.93	5.20
95	ER31a	ExonRegion	0	55.36	47.38	62.50	83.40	69.40	29.58	44.81
96	E31a_E32a	KnownJunction	1	53.27	63.10	65.60	85.09	69.00	19.89	33.03
97	E31a_E33a	NovelJunction	0	5.57	7.91	2.67	3.79	1.18	0.00	9.01
98	E32_Aa	NovelBoundary	0	0.83	13.50	2.16	9.21	1.18	21.95	2.04
99	ER32a	ExonRegion	0	52.39	70.75	55.26	80.01	68.46	30.15	34.32
100	E32_Da	NovelBoundary	1	2.22	4.60	6.06	8.32	3.16	22.24	5.32
101	E32a_E33a	KnownJunction	1	53.36	79.23	59.71	71.90	56.23	22.57	34.04
102	ER33a	ExonRegion	1	44.97	58.74	59.21	59.47	73.37	19.68	37.59
103	E33a_E34a	KnownJunction	1	39.61	34.81	59.79	54.62	84.26	13.51	35.69
104	ER34a	ExonRegion	0	69.60	50.13	80.26	71.61	72.57	22.64	36.19
105	E34a_E35a	KnownJunction	1	55.08	34.65	62.28	79.05	59.61	20.21	23.98
106	E34a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
107	ER35a	ExonRegion	0	70.88	42.57	82.99	71.29	74.96	21.87	36.17
108	E35a_E36a	KnownJunction	0	55.34	39.30	68.00	69.84	53.55	27.66	25.04
109	ER36a	ExonRegion	1	66.58	41.65	56.54	62.44	55.24	16.92	26.88
110	E36a_E37b	KnownJunction	1	66.79	39.80	46.37	45.73	60.14	10.48	26.14
111	ER37a	ExonRegion	0	2.94	0.93	2.03	1.18	0.91	1.03	0.94
112	E37_Ab	KnownBoundary	0	4.47	2.63	1.28	0.00	0.00	1.66	1.49
113	ER37b	ExonRegion	0	46.88	31.31	44.86	46.31	48.03	15.98	19.00
114	E37a_E38a	KnownJunction	0	35.42	23.12	20.38	23.24	56.69	16.27	19.03
115	I37_AR1	ActiveIntronRegion	1	3.69	22.96	6.42	23.89	1.49	56.99	8.41
116	ER38a	ExonRegion	0	49.83	51.01	49.36	60.66	57.79	24.75	27.12
117	E38a_E39a	KnownJunction	0	10.01	3.28	7.34	5.85	7.05	2.89	7.87
118	E38a_E40a	KnownJunction	0	42.81	42.98	44.86	71.33	28.98	31.76	28.75
119	ER39a	ExonRegion	0	7.38	7.57	9.05	7.48	9.72	2.33	8.49
120	E39a_E40a	KnownJunction	0	6.43	7.41	8.36	5.99	10.44	1.61	4.30
121	I39	Intron	1	43.16	72.10	22.98	57.70	66.68	180.79	44.88
122	I39_AR1	ActiveIntronRegion	1	47.53	79.46	25.28	63.21	73.64	199.50	49.54
123	E40_Aa	NovelBoundary	1	41.31	119.82	20.38	83.01	39.95	234.71	63.17
124	ER40a	ExonRegion	0	102.72	177.72	93.57	156.52	120.51	289.16	105.59
125	E40_Da	KnownBoundary	1	148.76	126.21	106.30	103.33	136.61	273.65	112.09
126	ER40b	ExonRegion	1	77.00	62.90	55.69	49.38	97.43	122.04	55.45
127	IG31	Intergenic	0	80.86	205.57	56.12	146.09	100.32	362.28	107.63
128	IG31_AR1	ActiveIntergenicRegion	0	81.21	206.44	56.37	146.72	100.73	363.82	108.11