Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	POLH	Gene	0	47.28	93.01	49.58	42.64	48.06	55.32	98.29
2	372236	Transcript	0	39.77	90.28	41.81	29.68	42.82	54.26	93.59
3	372226	Transcript	0	2.74	3.20	2.55	1.46	4.68	1.24	4.42
4	ER1a	ExonRegion	0	16.13	39.23	10.38	19.56	35.71	16.99	30.40
5	E1_Ab	KnownBoundary	0	15.84	71.56	13.84	19.94	19.00	24.15	27.97
6	ER1b	ExonRegion	0	48.81	97.71	27.49	41.88	44.16	37.99	84.85
7	E1a_E2a	KnownJunction	0	26.54	88.82	23.94	28.34	80.25	25.54	97.04
8	ER2a	ExonRegion	0	22.37	113.06	34.79	37.62	55.32	42.17	98.09
9	E2a_E3a	KnownJunction	0	28.47	120.32	36.46	41.61	53.37	64.43	118.29
10	ER3a	ExonRegion	0	37.14	135.96	52.46	50.62	72.38	54.09	156.46
11	E3a_E4a	KnownJunction	1	25.52	119.11	48.44	51.61	84.53	46.58	130.92
12	ER4a	ExonRegion	1	33.45	134.36	52.36	48.80	91.22	62.68	158.05
13	E4_Da	NovelBoundary	0	15.52	25.25	6.87	20.21	48.92	28.68	14.90
14	E4a_E5a	KnownJunction	0	39.44	100.46	55.01	39.77	39.90	38.08	153.22
15	E4a_E6a	NovelJunction	0	0.87	8.22	3.46	2.68	0.00	4.23	4.10
16	I4_AR1	ActiveIntronRegion	0	6.35	10.79	4.23	5.64	34.58	11.30	8.92
17	I4_SR1	SilentIntronRegion	0	5.00	6.50	1.22	1.49	13.31	4.72	9.33
18	I4_AR2	ActiveIntronRegion	0	4.53	4.07	1.96	2.91	12.61	5.38	7.64
19	ER5a	ExonRegion	0	32.89	111.59	48.31	50.69	43.68	51.18	128.12
20	E5_Da	NovelBoundary	1	3.97	6.36	0.00	12.46	1.04	29.69	1.91
21	E5a_E6a	KnownJunction	0	34.85	113.31	57.01	40.18	51.89	51.59	123.58
22	I5	Intron	0	2.01	2.77	0.47	2.69	0.24	11.63	0.94
23	I5_SR1	SilentIntronRegion	1	2.01	2.77	0.47	2.70	0.24	11.65	0.94
24	E6_Aa	NovelBoundary	1	1.55	3.55	0.00	3.25	1.98	18.63	0.62
25	ER6a	ExonRegion	1	25.28	102.02	50.45	32.97	35.78	61.01	116.13
26	E6_Da	NovelBoundary	1	0.00	13.08	0.69	4.36	0.00	38.32	4.61
27	E6a_E7a	KnownJunction	1	24.67	75.43	56.02	32.59	30.61	42.88	88.83
28	I6	Intron	1	7.96	8.96	1.10	8.06	0.70	22.49	1.35
29	I6_SR1	SilentIntronRegion	1	7.54	8.96	0.89	7.18	0.62	22.52	1.22
30	I6_AR1	ActiveIntronRegion	1	9.76	9.01	1.95	11.69	1.05	22.55	1.87
31	E7_Aa	NovelBoundary	1	5.94	13.87	2.89	7.72	0.00	31.25	0.89
32	ER7a	ExonRegion	0	34.83	102.04	66.90	47.37	44.27	65.53	103.85
33	E7_Da	NovelBoundary	1	5.47	13.08	3.15	5.07	0.00	54.32	0.69
34	E7a_E8a	KnownJunction	1	30.83	111.10	78.95	57.24	43.18	41.35	114.68
35	I7	Intron	1	9.31	13.18	1.07	9.38	0.28	33.32	2.32
36	I7_AR1	ActiveIntronRegion	1	10.04	14.33	0.74	11.14	0.46	32.36	2.34
37	I7_SR1	SilentIntronRegion	1	8.76	12.30	1.35	7.95	0.13	34.33	2.32
38	E8_Aa	NovelBoundary	1	2.67	16.37	4.35	11.57	0.00	45.43	1.45
39	ER8a	ExonRegion	0	58.63	161.07	90.01	69.98	59.65	91.84	147.56
40	E8_Da	NovelBoundary	1	7.14	26.69	6.44	15.60	0.88	75.87	0.89
41	E8a_E9a	KnownJunction	0	43.84	133.20	65.79	52.31	44.08	45.91	142.64
42	I8	Intron	1	10.71	13.04	2.61	11.17	0.33	48.37	1.41
43	I8_SR1	SilentIntronRegion	1	10.75	13.07	2.62	11.21	0.33	48.54	1.41
44	E9_Aa	NovelBoundary	1	2.75	8.59	2.28	11.62	0.95	56.90	1.22
45	ER9a	ExonRegion	1	42.96	131.70	78.25	42.15	47.93	36.37	153.42
46	E9_Da	NovelBoundary	1	4.79	13.82	2.49	13.90	1.18	61.77	3.51
47	E9a_E10a	KnownJunction	0	55.56	133.22	89.00	38.93	43.66	42.75	170.97
48	I9	Intron	1	13.46	16.91	4.29	9.17	1.22	25.69	3.93
49	I9_AR1	ActiveIntronRegion	1	0.95	2.98	1.21	3.04	0.43	16.39	0.78
50	I9_SR1	SilentIntronRegion	1	15.37	18.58	4.65	9.82	1.21	28.55	4.15
51	E10_Aa	NovelBoundary	1	16.69	7.64	2.11	4.50	3.16	15.76	7.75
52	ER10a	ExonRegion	0	48.55	130.85	61.47	47.27	50.02	72.64	136.92
53	E10_Da	NovelBoundary	1	22.18	16.21	3.39	21.86	0.00	26.50	10.85
54	E10a_E11a	KnownJunction	0	51.00	118.22	54.20	31.43	45.60	61.67	123.91
55	E10a_E11b	KnownJunction	0	2.07	3.15	3.74	2.93	4.10	1.66	6.29
56	I10	Intron	0	10.65	9.99	2.73	5.93	2.34	14.29	5.95
57	I10_SR1	SilentIntronRegion	0	6.80	9.30	1.40	8.23	2.99	15.62	4.23
58	I10_AR1	ActiveIntronRegion	0	12.42	14.86	3.73	8.30	3.70	21.45	10.24
59	E11_Aa	NovelBoundary	0	9.25	24.09	1.62	11.89	5.00	13.56	10.48
60	ER11a	ExonRegion	0	52.17	113.39	60.84	38.05	47.16	84.12	126.47
61	E11_Ab	KnownBoundary	0	45.80	101.57	61.29	47.36	34.63	87.90	97.15
62	ER11b	ExonRegion	0	55.56	74.21	47.99	40.81	42.56	54.22	78.90
63	ER11c	ExonRegion	0	3.42	3.24	1.35	0.00	5.26	0.82	2.55
64	IG10	Intergenic	0	25.45	25.73	17.57	15.86	10.45	32.37	21.25
65	IG10_AR2	ActiveIntergenicRegion	0	38.32	61.31	33.67	38.11	22.60	67.83	43.12
66	IG10_SR3	SilentIntergenicRegion	0	10.98	17.46	9.58	9.45	9.77	21.18	17.10
67	IG10_SR4	SilentIntergenicRegion	0	22.25	20.57	16.95	11.98	7.41	29.10	16.81
68	IG10_AR4	ActiveIntergenicRegion	0	44.33	30.01	23.67	20.58	11.08	39.28	25.14