Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TAF8	Gene	0	47.84	27.64	41.56	21.11	44.51	18.50	30.03
2	372977	Transcript	0	31.45	13.00	34.94	13.12	30.01	9.67	14.44
3	372982	Transcript	0	0	0	0	0	0	0	0
4	320973	Transcript	0	6.93	2.01	9.09	2.33	9.99	4.03	2.85
5	372978	Transcript	0	9.82	7.85	6.62	3.82	19.49	2.39	4.18
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1b	ExonRegion	0	0.56	1.05	0.72	0.25	1.67	0.16	0.81
8	ER1c	ExonRegion	0	15.75	26.08	24.62	10.56	45.48	12.16	23.75
9	E1a_E2a	KnownJunction	0	26.57	42.24	48.86	16.50	40.76	19.08	43.15
10	ER2a	ExonRegion	0	24.06	38.22	33.18	23.30	40.17	23.41	28.63
11	E2a_E3a	KnownJunction	0	89.21	60.63	125.94	49.17	90.16	57.51	90.85
12	ER3a	ExonRegion	0	69.09	75.87	84.22	54.02	139.78	52.30	82.41
13	E3a_E4a	KnownJunction	0	33.63	58.03	40.55	44.78	70.89	46.47	58.56
14	ER4a	ExonRegion	0	43.48	68.51	45.23	41.37	67.67	44.35	63.82
15	E4a_E5a	KnownJunction	0	56.23	69.51	51.63	60.20	85.89	41.73	70.95
16	ER5a	ExonRegion	0	60.90	60.24	56.61	39.82	85.78	37.31	57.96
17	E5_Da	KnownBoundary	0	14.45	17.31	9.38	7.83	19.78	9.22	7.24
18	E5a_E6a	KnownJunction	0	34.21	18.21	43.37	10.97	39.93	13.11	34.04
19	ER5b	ExonRegion	0	9.82	7.85	6.62	3.82	19.49	2.39	4.18
20	ER6a	ExonRegion	0	40.27	22.74	44.16	16.03	52.21	11.21	37.14
21	E6_Da	NovelBoundary	1	4.94	9.04	2.04	9.78	8.30	0.00	5.96
22	E6a_E7a	KnownJunction	0	51.20	19.68	62.50	11.41	80.29	12.46	41.96
23	I6	Intron	0	8.70	7.68	3.12	3.78	3.15	2.30	2.95
24	I6_SR1	SilentIntronRegion	0	9.36	8.02	3.31	3.75	3.05	1.93	2.60
25	E7_Aa	NovelBoundary	1	10.90	12.61	4.14	13.74	5.67	1.66	5.09
26	ER7a	ExonRegion	0	42.31	25.20	52.13	22.85	54.61	12.28	33.70
27	E7_Da	NovelBoundary	1	8.80	17.02	6.42	10.05	4.06	0.00	2.41
28	E7a_E8a	KnownJunction	0	2.22	0.00	5.03	0.00	6.20	0.00	1.23
29	E7a_E9a	KnownJunction	0	27.54	16.42	38.54	24.35	34.37	12.44	19.13
30	E8_Aa	NovelBoundary	0	27.42	74.43	33.45	87.10	15.70	107.68	14.40
31	ER8a	ExonRegion	0	17.72	6.02	15.69	6.98	23.76	12.10	6.44
32	E8_Da	NovelBoundary	0	894.01	402.87	552.74	296.40	156.02	329.58	241.30
33	E8a_E9a	KnownJunction	0	0.85	0.00	6.55	0.00	0.00	0.00	0.89
34	I8	Intron	1	12.81	11.90	3.60	9.34	2.00	1.83	5.47
35	I8_SR1	SilentIntronRegion	1	10.32	10.63	3.41	7.37	1.78	1.34	2.95
36	I8_AR1	ActiveIntronRegion	0	10.63	10.25	3.78	9.30	3.10	2.12	2.92
37	I8_SR2	SilentIntronRegion	0	10.41	9.71	2.74	7.62	1.18	1.98	5.44
38	I8_AR2	ActiveIntronRegion	1	10.93	16.78	3.55	14.42	1.03	1.24	8.95
39	I8_AR3	ActiveIntronRegion	1	10.55	14.79	4.18	13.76	1.56	2.45	4.68
40	I8_AR4	ActiveIntronRegion	1	11.70	14.58	4.06	13.44	1.62	2.45	6.30
41	I8_AR5	ActiveIntronRegion	1	13.49	9.58	4.59	14.82	1.21	1.91	6.75
42	I8_AR6	ActiveIntronRegion	1	19.15	8.27	5.28	10.20	1.00	1.24	2.97
43	I8_SR4	SilentIntronRegion	1	17.09	17.46	4.26	11.69	3.49	2.04	8.57
44	E9_Aa	NovelBoundary	1	12.50	12.06	8.36	17.47	3.30	2.22	12.93
45	ER9a	ExonRegion	0	50.31	21.55	55.67	24.32	54.77	11.24	25.21
46	E9_Da	NovelBoundary	1	18.08	28.79	7.26	15.63	6.59	4.29	16.34
47	E9a_E10a	KnownJunction	1	35.27	10.04	55.12	16.69	39.21	7.08	13.17
48	E9a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	I9	Intron	1	16.13	24.52	9.37	14.53	3.80	2.23	14.66
50	I9_SR1	SilentIntronRegion	1	14.14	19.44	8.80	14.72	3.19	1.52	10.50
51	I9_AR1	ActiveIntronRegion	1	17.32	27.28	9.78	14.65	4.14	2.60	16.83
52	E10_Aa	NovelBoundary	1	31.33	17.31	11.50	19.72	7.03	2.97	20.45
53	ER10a	ExonRegion	0	59.08	28.96	49.68	22.66	50.81	21.94	30.14
54	E10_Da	NovelBoundary	0	34.75	2.08	34.59	8.53	9.20	4.29	12.71
55	I10	Intron	1	20.80	11.89	15.04	9.87	5.31	3.35	23.37
56	I10_AR1	ActiveIntronRegion	0	14.92	0.00	13.40	3.08	6.57	2.27	2.47
57	I10_AR3	ActiveIntronRegion	1	31.42	16.71	23.24	14.16	8.06	5.32	25.64
58	I10_SR2	SilentIntronRegion	1	17.87	10.37	11.99	8.65	3.64	2.12	24.04
59	I10_AR4	ActiveIntronRegion	1	21.45	22.43	16.69	12.56	7.23	5.43	36.91
60	I10_AR5	ActiveIntronRegion	1	15.41	15.76	13.64	11.82	7.56	7.22	26.77
61	E11_Aa	NovelBoundary	1	21.21	20.62	15.66	12.43	3.92	3.32	32.76
62	ER11a	ExonRegion	1	21.83	18.41	12.12	14.52	3.48	3.91	28.95
63	IG21	Intergenic	0	66.08	81.02	36.58	59.43	14.99	9.45	110.31
64	IG21_AR1	ActiveIntergenicRegion	0	4.74	1.42	0.00	3.53	0.00	0.00	8.99
65	IG21_SR1	SilentIntergenicRegion	0	26.62	22.75	10.17	20.76	1.77	4.32	39.15
66	IG21_AR2	ActiveIntergenicRegion	0	58.54	57.63	33.56	62.20	8.03	9.42	120.92
67	IG21_SR2	SilentIntergenicRegion	0	43.53	45.39	21.99	40.35	8.25	4.47	72.10
68	IG21_AR3	ActiveIntergenicRegion	0	53.71	56.36	37.63	54.73	8.59	2.45	137.02
69	IG21_AR4	ActiveIntergenicRegion	0	66.19	62.52	34.14	60.52	9.82	7.98	119.97
70	IG21_AR5	ActiveIntergenicRegion	0	32.82	36.31	17.15	34.09	5.76	2.96	68.76
71	IG21_SR3	SilentIntergenicRegion	0	82.59	78.06	49.50	56.16	11.10	8.28	158.73
72	IG21_AR6	ActiveIntergenicRegion	0	62.56	48.80	29.74	40.90	8.01	6.87	83.08
73	IG21_SR4	SilentIntergenicRegion	0	45.68	57.51	25.15	42.40	7.62	5.18	97.20
74	IG21_SR5	SilentIntergenicRegion	0	91.89	125.63	57.66	106.91	21.12	14.93	215.08
75	IG21_AR8	ActiveIntergenicRegion	0	95.58	140.49	56.95	80.27	26.10	12.66	142.30
76	IG21_AR9	ActiveIntergenicRegion	0	65.32	51.43	32.89	20.37	22.23	3.68	42.72
77	IG21_AR10	ActiveIntergenicRegion	0	135.14	156.74	77.43	70.93	59.55	15.42	122.68
78	IG21_AR11	ActiveIntergenicRegion	0	142.26	199.54	82.56	90.56	80.78	17.39	156.08
79	IG21_AR12	ActiveIntergenicRegion	0	168.01	249.84	88.64	111.49	64.66	24.87	103.95