Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ABCC10	Gene	0	21.62	10.68	19.15	8.22	21.87	3.13	35.06
2	372530	Transcript	0	8.14	3.52	7.08	4.71	6.28	0.51	11.28
3	372515	Transcript	0	2.13	0.91	1.55	0.92	4.13	0.00	4.21
4	244533	Transcript	0	2.59	0.09	1.43	0.29	1.02	0.02	4.26
5	372512	Transcript	0	1.50	0.42	0.84	0.19	1.61	0.05	2.43
6	ER1a	ExonRegion	0	1.82	0.78	1.53	1.67	1.38	0.00	0.53
7	E1a_E2b	KnownJunction	0	2.79	1.37	2.36	2.49	3.25	0.00	2.45
8	ER2a	ExonRegion	0	4.99	0.00	2.62	2.54	9.82	0.00	9.72
9	E2a_E3c	KnownJunction	0	0.00	0.00	0.68	0.00	0.00	0.00	1.45
10	ER2b	ExonRegion	0	7.07	2.47	4.49	7.16	3.99	0.00	8.24
11	E2b_E3b	KnownJunction	0	11.45	4.94	5.89	9.16	7.47	0.00	13.17
12	ER3a	ExonRegion	0	0.63	0.01	1.76	0.02	2.17	0.00	3.51
13	E3_Ab	KnownBoundary	0	0.00	0.00	3.38	0.00	2.12	0.00	4.77
14	ER3b	ExonRegion	0	15.82	11.45	15.76	15.40	14.12	2.64	27.05
15	E3_Ac	KnownBoundary	0	17.47	9.59	16.24	5.82	8.09	0.00	22.07
16	ER3c	ExonRegion	1	22.66	16.79	18.45	4.54	22.32	2.21	38.38
17	E3a_E4a	KnownJunction	0	24.37	10.17	21.97	4.42	17.17	0.00	41.50
18	ER4a	ExonRegion	0	22.19	13.81	25.30	7.96	20.80	1.81	46.61
19	E4_Da	KnownBoundary	0	3.34	4.36	4.10	0.00	4.20	0.00	5.93
20	E4a_E5a	KnownJunction	0	20.51	10.85	26.73	3.74	23.65	1.66	45.07
21	ER4b	ExonRegion	0	1.42	2.74	1.34	0.22	2.57	0.00	1.46
22	I4_AR1	ActiveIntronRegion	0	9.97	5.18	8.48	1.83	7.21	0.00	5.85
23	E5_Aa	NovelBoundary	0	11.42	0.00	7.90	2.28	16.00	1.07	10.02
24	ER5a	ExonRegion	0	28.80	15.30	31.82	6.80	27.22	6.43	54.23
25	E5a_E6a	KnownJunction	0	3.54	0.00	0.62	0.00	0.00	0.00	3.12
26	E5a_E6b	KnownJunction	0	25.72	11.56	28.22	7.78	21.58	3.06	43.30
27	ER6a	ExonRegion	0	3.59	0.26	1.90	0.87	0.88	0.05	6.14
28	E6_Ab	KnownBoundary	0	1.03	0.00	1.61	1.52	1.89	0.00	4.66
29	ER6b	ExonRegion	0	30.00	9.76	33.55	6.22	29.38	4.99	54.38
30	E6a_E7a	KnownJunction	0	39.42	13.24	36.53	10.35	31.19	9.97	47.35
31	ER7a	ExonRegion	0	27.07	8.85	23.37	4.60	25.51	3.25	54.19
32	E7a_E8a	KnownJunction	1	7.73	5.62	17.39	4.09	15.86	0.00	50.36
33	ER8a	ExonRegion	0	35.24	11.06	32.37	9.28	34.53	3.45	66.31
34	E8a_E9a	KnownJunction	1	30.14	13.14	22.29	11.87	38.57	6.91	94.93
35	ER9a	ExonRegion	0	28.73	10.90	28.37	14.81	37.52	3.58	65.40
36	E9a_E10a	KnownJunction	0	35.38	11.19	33.89	14.33	26.81	1.18	49.95
37	ER10a	ExonRegion	0	28.22	9.27	22.55	8.59	35.76	3.83	66.73
38	E10_Da	NovelBoundary	1	6.36	1.05	1.94	1.46	2.07	0.00	11.47
39	E10a_E11a	KnownJunction	0	23.83	7.01	16.43	7.40	35.39	0.00	44.24
40	I10	Intron	0	4.26	1.37	4.47	0.16	4.49	0.00	8.29
41	I10_AR1	ActiveIntronRegion	1	4.28	1.38	4.49	0.16	4.51	0.00	8.32
42	E11_Aa	NovelBoundary	1	5.52	3.26	1.38	1.22	4.10	0.00	9.57
43	ER11a	ExonRegion	0	31.98	6.81	23.41	7.26	36.48	1.01	49.51
44	E11a_E12a	KnownJunction	0	29.36	5.75	28.32	3.71	42.56	2.73	50.40
45	ER12a	ExonRegion	0	39.70	13.67	39.17	11.90	39.51	5.02	59.80
46	E12a_E13a	KnownJunction	0	47.48	18.34	33.83	15.71	39.65	7.29	54.49
47	ER13a	ExonRegion	0	75.14	30.36	62.88	15.18	57.21	6.55	55.85
48	E13_Da	NovelBoundary	1	1.82	0.00	1.32	1.68	0.00	0.00	10.62
49	E13a_E14b	KnownJunction	1	66.81	34.84	56.19	14.06	66.90	6.00	43.44
50	E13a_E15a	NovelJunction	0	3.22	0.00	2.66	0.00	0.00	0.00	10.35
51	ER14a	ExonRegion	0	3.01	1.26	2.34	0.58	4.21	0.14	5.42
52	ER14b	ExonRegion	0	49.89	19.20	34.11	10.95	42.34	4.42	44.37
53	E14_Da	NovelBoundary	1	0.00	0.00	3.23	0.00	5.05	0.00	12.04
54	E14a_E15a	KnownJunction	0	35.98	15.92	26.14	11.65	33.84	0.99	46.10
55	E14a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	I14	Intron	1	1.03	0.33	1.63	1.33	2.60	0.00	9.35
57	I14_SR1	SilentIntronRegion	1	1.11	0.45	2.00	1.40	3.19	0.00	10.13
58	E15_Aa	NovelBoundary	1	0.77	0.00	0.00	0.00	2.28	0.00	9.42
59	ER15a	ExonRegion	0	21.92	9.91	17.76	6.20	21.12	3.36	38.06
60	E15a_E16a	KnownJunction	0	24.52	4.86	16.76	4.47	16.60	6.94	36.63
61	E16_Aa	NovelBoundary	1	0.00	0.00	0.73	1.68	1.18	0.00	9.50
62	ER16a	ExonRegion	0	18.82	12.40	13.81	6.48	22.43	3.35	37.60
63	E16_Da	NovelBoundary	1	3.22	0.00	5.99	1.49	6.52	0.00	17.27
64	E16a_E17a	KnownJunction	0	16.02	6.28	16.83	2.71	30.73	5.82	28.39
65	I16_AR1	ActiveIntronRegion	1	2.91	0.83	2.07	0.35	2.92	0.35	8.07
66	ER17a	ExonRegion	0	17.75	7.83	16.97	7.93	17.75	4.30	36.43
67	E17a_E18a	KnownJunction	0	9.81	3.52	9.28	7.04	8.58	2.41	15.64
68	E17_Db	NovelBoundary	1	0.95	1.50	3.75	1.44	2.07	1.61	14.73
69	ER17b	ExonRegion	0	1.48	0.00	0.16	0.00	0.61	0.00	1.86
70	I17	Intron	1	3.09	0.75	3.27	1.93	2.85	0.76	13.32
71	I17_AR1	ActiveIntronRegion	1	3.40	0.68	3.91	2.14	2.71	0.92	15.34
72	ER18a	ExonRegion	0	25.32	14.21	18.88	5.07	19.87	2.57	33.81
73	E18a_E19a	KnownJunction	0	35.47	13.21	19.27	5.99	24.60	5.41	39.58
74	I18_SR1	SilentIntronRegion	1	2.56	1.09	2.61	0.40	5.28	0.00	7.58
75	I18_AR2	ActiveIntronRegion	1	0.00	1.21	0.00	0.10	6.82	0.00	7.36
76	ER19a	ExonRegion	0	30.38	15.79	22.77	8.48	25.21	5.00	35.93
77	E19a_E20a	KnownJunction	0	26.60	12.45	22.03	8.75	29.25	2.41	40.07
78	ER20a	ExonRegion	0	24.10	13.34	23.08	10.06	30.88	5.57	48.72
79	E20a_E21a	KnownJunction	1	20.48	22.30	27.82	6.45	42.44	6.59	75.47
80	ER21a	ExonRegion	0	45.14	22.58	34.66	9.17	62.31	10.68	70.59
81	E21a_E22a	KnownJunction	1	38.12	20.73	24.47	5.69	40.85	9.73	58.24
82	ER22a	ExonRegion	0	15.54	10.59	14.37	4.90	24.53	4.55	32.38
83	ER22b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00