Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ITPR3	Gene	0	156.28	488.21	281.16	563.14	123.50	112.51	914.25
2	374316	Transcript	0	160.94	498.26	287.78	570.27	121.04	108.58	916.22
3	ER1a	ExonRegion	0	18.00	138.73	36.03	125.86	8.87	32.30	80.77
4	E1a_E2a	KnownJunction	0	40.44	265.76	70.23	291.83	18.60	72.47	186.55
5	I1_AR3	ActiveIntronRegion	0	1.47	17.37	3.89	16.06	13.22	26.31	4.38
6	ER2a	ExonRegion	0	53.52	291.74	101.05	315.53	22.29	70.02	261.90
7	E2a_E3a	KnownJunction	0	85.47	335.35	165.63	360.85	35.13	90.21	400.39
8	ER3a	ExonRegion	0	86.03	486.25	185.93	472.97	50.68	101.21	621.49
9	E3a_E4a	KnownJunction	0	97.07	521.57	173.44	534.24	73.75	117.36	598.11
10	E4_Aa	NovelBoundary	1	42.78	4.33	69.91	0.00	3.99	0.00	1.29
11	ER4a	ExonRegion	0	123.44	603.78	225.06	551.30	71.98	116.46	666.33
12	E4a_E5a	KnownJunction	0	125.04	623.89	230.44	504.60	54.64	118.13	733.47
13	E5_Aa	NovelBoundary	1	44.76	15.55	86.67	27.66	2.93	2.57	8.87
14	ER5a	ExonRegion	0	110.53	550.66	203.27	511.13	76.83	90.54	730.58
15	E5a_E6a	KnownJunction	0	117.93	498.34	186.73	480.30	103.67	79.92	597.98
16	E5a_E7a	NovelJunction	0	3.74	27.19	6.50	50.06	0.00	17.58	23.59
17	ER6a	ExonRegion	0	101.38	584.14	213.11	534.07	88.50	82.56	660.16
18	E6a_E7a	KnownJunction	0	104.45	579.18	193.44	542.66	77.46	94.66	636.19
19	ER7a	ExonRegion	0	95.91	523.10	179.80	539.65	62.76	107.77	636.87
20	E7a_E8a	KnownJunction	0	82.01	462.06	176.22	539.55	57.03	112.13	576.70
21	ER8a	ExonRegion	0	78.70	469.26	165.97	519.81	57.40	85.80	560.78
22	E8a_E9a	KnownJunction	0	66.34	413.56	126.53	421.48	44.26	56.04	469.48
23	ER9a	ExonRegion	0	98.34	448.74	171.34	485.50	61.35	83.85	574.46
24	E9a_E10a	KnownJunction	0	118.75	425.68	200.84	479.32	77.73	87.26	512.89
25	ER10a	ExonRegion	0	130.56	456.33	221.94	502.75	73.76	79.28	562.17
26	E10a_E11a	KnownJunction	0	111.19	428.46	180.51	459.68	61.09	63.68	532.43
27	ER11a	ExonRegion	0	146.88	475.14	221.01	562.78	67.69	91.58	643.42
28	E11a_E12a	KnownJunction	0	173.76	443.91	261.67	518.12	78.40	83.21	627.29
29	ER12a	ExonRegion	0	121.87	474.30	223.08	520.93	72.54	74.83	586.77
30	E12a_E13a	KnownJunction	0	90.19	435.92	198.02	460.36	56.87	77.53	515.69
31	ER13a	ExonRegion	0	114.26	448.10	254.75	530.77	77.89	75.78	617.63
32	E13a_E14a	KnownJunction	0	127.16	532.57	289.89	604.86	93.39	98.01	702.10
33	ER14a	ExonRegion	0	143.84	519.37	344.12	630.06	87.69	110.31	816.01
34	E14a_E15a	KnownJunction	0	147.84	504.12	351.54	645.09	116.67	124.59	779.97
35	ER15a	ExonRegion	0	184.51	574.50	352.06	661.16	102.93	113.38	969.16
36	E15a_E16a	KnownJunction	0	198.58	595.63	418.00	740.54	114.04	137.19	1187.82
37	E16_Aa	NovelBoundary	1	84.25	3.36	170.43	2.82	0.00	0.00	0.00
38	ER16a	ExonRegion	0	200.47	610.60	362.76	666.24	112.37	107.46	1146.26
39	E16a_E17a	KnownJunction	0	178.35	630.75	344.66	735.12	102.86	109.21	1271.23
40	E17_Aa	NovelBoundary	1	75.04	2.18	145.00	1.19	0.00	0.00	0.60
41	ER17a	ExonRegion	0	173.57	602.50	341.09	637.41	123.81	112.12	1199.93
42	E17a_E18a	KnownJunction	0	176.30	537.22	329.99	599.58	74.97	103.53	1007.70
43	ER18a	ExonRegion	0	150.84	504.23	271.47	548.66	101.85	92.33	1023.46
44	E18a_E19a	KnownJunction	0	171.41	491.56	257.59	531.74	157.84	89.46	1062.17
45	ER19a	ExonRegion	0	205.57	511.79	301.11	571.91	101.72	109.79	1121.81
46	E19a_E20a	KnownJunction	0	239.45	477.69	336.68	557.32	109.32	93.45	963.54
47	ER20a	ExonRegion	0	150.23	411.22	249.58	451.54	89.96	63.36	814.53
48	E20_Da	NovelBoundary	1	45.63	23.41	82.34	9.32	6.02	5.68	19.35
49	E20a_E21a	KnownJunction	0	101.17	284.60	201.86	385.37	83.75	42.88	592.69
50	E20a_E22a	NovelJunction	1	2.40	6.25	15.18	40.88	3.00	13.53	46.15
51	ER21a	ExonRegion	0	85.08	268.55	181.04	314.94	66.85	36.86	542.86
52	E21a_E22a	KnownJunction	0	133.25	241.91	216.24	277.77	76.56	26.45	503.45
53	ER22a	ExonRegion	0	227.28	412.09	321.60	499.09	115.52	76.84	727.34
54	E22a_E23a	KnownJunction	0	326.25	649.22	494.79	775.51	156.57	137.99	1078.27
55	ER23a	ExonRegion	0	285.71	553.12	398.49	673.23	125.94	102.13	899.35
56	E23a_E24a	KnownJunction	1	276.52	435.92	334.47	571.65	165.63	106.42	807.43
57	ER24a	ExonRegion	0	208.14	377.42	272.79	475.03	130.85	77.11	731.15
58	E24a_E25a	KnownJunction	0	150.74	317.02	221.86	401.22	113.90	55.61	620.61
59	ER25a	ExonRegion	0	111.67	400.85	193.81	432.17	85.73	69.82	664.07
60	E25a_E26a	KnownJunction	0	109.00	433.87	184.85	472.98	92.65	73.91	692.26
61	ER26a	ExonRegion	0	98.17	435.48	209.22	477.31	91.81	92.94	652.76
62	E26a_E27a	KnownJunction	0	123.37	516.76	250.60	550.08	132.09	89.46	771.19
63	ER27a	ExonRegion	0	183.73	569.15	333.16	624.71	135.50	112.61	921.77
64	E27a_E28a	KnownJunction	0	207.84	558.66	362.62	675.08	124.99	112.00	991.39
65	ER28a	ExonRegion	0	144.23	564.26	320.45	647.63	121.40	91.68	944.26
66	E28a_E29a	KnownJunction	0	205.84	522.96	367.56	628.54	168.68	87.50	1024.41
67	ER29a	ExonRegion	0	203.92	519.14	359.35	643.16	156.59	102.73	1099.90
68	E29a_E30a	KnownJunction	0	173.98	522.49	297.32	588.74	143.07	100.53	1058.20
69	ER30a	ExonRegion	0	155.11	517.36	285.93	659.39	147.27	96.34	1207.80
70	E30a_E31a	KnownJunction	0	138.39	442.12	221.66	578.12	129.30	99.16	1172.51
71	ER31a	ExonRegion	0	171.60	554.20	279.34	645.28	153.53	91.13	1296.29
72	E31a_E32a	KnownJunction	0	192.45	564.07	320.16	588.34	140.90	98.65	1172.48
73	ER32a	ExonRegion	0	186.91	589.06	312.46	590.58	137.31	86.46	1126.56
74	E32a_E33a	KnownJunction	0	121.14	412.38	218.17	447.63	70.96	76.19	906.66
75	ER33a	ExonRegion	0	176.83	500.13	307.46	565.51	134.94	93.12	1013.83
76	E33a_E34a	KnownJunction	0	141.30	503.47	297.62	450.58	133.55	87.02	892.70
77	E33a_E35a	NovelJunction	1	0.67	6.73	6.52	38.42	0.00	12.03	0.72
78	E34_Aa	NovelBoundary	1	48.70	7.22	108.35	5.01	2.97	0.00	4.50
79	ER34a	ExonRegion	0	104.87	421.64	207.28	460.68	81.79	66.68	755.87
80	E34a_E35a	KnownJunction	0	115.73	333.99	201.23	391.06	54.89	65.45	616.42
81	ER35a	ExonRegion	0	108.85	387.79	216.65	438.86	80.66	78.01	684.01
82	E35a_E36a	KnownJunction	0	101.39	370.64	208.31	458.38	63.19	67.51	682.59
83	ER36a	ExonRegion	0	116.29	447.59	223.66	503.81	90.72	87.05	715.04
84	E36a_E37a	KnownJunction	0	157.45	464.35	301.75	554.74	117.43	114.14	805.96
85	ER37a	ExonRegion	0	156.45	503.05	303.78	630.29	107.23	131.52	903.61
86	E37a_E38a	KnownJunction	0	184.94	450.48	312.68	600.34	120.80	113.66	847.52
87	ER38a	ExonRegion	0	199.30	471.34	304.61	620.23	99.60	131.28	782.40
88	E38a_E39a	KnownJunction	0	147.97	457.46	294.10	613.13	93.64	123.47	823.84
89	ER39a	ExonRegion	0	148.97	439.71	291.41	579.09	124.41	118.61	981.21
90	E39_Da	NovelBoundary	0	38.35	140.60	76.84	197.11	8.25	42.93	60.36
91	E39a_E40a	KnownJunction	0	94.78	416.67	183.83	507.09	85.83	116.93	950.83
92	E40_Aa	NovelBoundary	1	43.61	57.11	99.16	44.56	12.61	10.34	83.88
93	ER40a	ExonRegion	0	102.64	477.68	200.61	622.33	95.02	124.03	809.67
94	E40a_E41a	KnownJunction	0	152.48	411.07	264.30	529.17	116.56	113.93	910.73
95	ER41a	ExonRegion	0	159.10	509.30	274.64	583.52	120.08	128.60	973.21
96	E41a_E42a	KnownJunction	0	187.85	583.07	369.66	667.15	177.94	129.31	1186.73
97	E42_Aa	NovelBoundary	1	78.38	7.62	152.25	2.60	2.10	1.18	4.21
98	ER42a	ExonRegion	0	190.21	579.87	361.30	682.60	151.68	123.46	1194.87
99	E42a_E43a	KnownJunction	0	232.86	611.57	430.42	800.60	159.25	106.31	1550.17
100	E43_Aa	NovelBoundary	1	84.75	1.47	161.24	2.82	0.97	1.61	10.85
101	ER43a	ExonRegion	0	228.43	672.89	413.17	822.07	213.15	165.52	1505.42
102	E43a_E44a	KnownJunction	0	281.13	712.80	437.09	785.24	153.67	178.75	1312.93
103	ER44a	ExonRegion	0	299.13	766.74	479.76	860.34	184.90	164.56	1409.91
104	E44a_E45a	KnownJunction	0	263.70	734.47	484.87	855.10	179.24	177.66	1387.74
105	ER45a	ExonRegion	0	296.33	664.86	433.55	748.02	177.13	154.04	1072.79
106	E45a_E46a	KnownJunction	0	316.24	578.16	403.22	677.87	182.28	128.67	1035.55
107	ER46a	ExonRegion	0	240.53	614.30	401.23	677.19	153.11	134.47	1018.73
108	E46a_E47a	KnownJunction	0	190.03	594.58	413.46	695.75	166.95	140.27	1078.07
109	ER47a	ExonRegion	0	207.64	589.62	455.54	693.65	186.03	151.26	1208.92
110	E47a_E48a	KnownJunction	0	174.63	533.21	362.38	642.06	152.01	124.65	947.03
111	ER48a	ExonRegion	0	152.31	578.06	339.39	654.65	209.89	134.77	1058.11
112	E48a_E49a	KnownJunction	0	100.96	554.72	232.37	692.15	122.30	125.74	804.41
113	ER49a	ExonRegion	0	173.29	616.18	320.20	668.11	168.46	146.15	1415.93
114	E49a_E50a	KnownJunction	0	187.36	514.66	333.06	625.72	107.01	145.15	1448.16
115	ER50a	ExonRegion	0	206.16	549.12	393.25	634.62	241.63	156.87	1625.37
116	E50a_E51a	KnownJunction	0	198.09	514.34	370.18	559.57	225.55	173.77	1412.62
117	ER51a	ExonRegion	0	198.59	576.42	380.41	633.65	212.41	162.75	1625.94
118	E51a_E52a	KnownJunction	0	168.92	549.23	350.74	693.18	183.43	176.80	1566.38
119	ER52a	ExonRegion	0	149.00	493.14	301.06	599.76	174.13	151.53	1284.90
120	E52a_E53a	KnownJunction	0	113.34	376.71	203.90	463.10	108.33	107.68	880.97
121	ER53a	ExonRegion	0	130.02	418.25	243.21	480.70	139.77	98.58	940.72
122	E53a_E54a	KnownJunction	0	141.03	420.53	275.55	439.66	142.12	104.71	888.42
123	ER54a	ExonRegion	0	175.40	513.60	337.19	560.99	189.79	134.14	1225.11
124	E54a_E55a	KnownJunction	0	176.15	494.22	316.69	542.09	225.18	124.83	1112.94
125	I54	Intron	0	31.41	48.08	49.19	36.33	16.60	10.01	109.69
126	I54_SR1	SilentIntronRegion	1	31.33	48.47	64.12	36.77	19.27	6.50	142.80
127	I54_AR1	ActiveIntronRegion	0	31.52	48.15	46.68	36.35	16.18	10.66	104.13
128	ER55a	ExonRegion	0	230.36	618.79	429.67	714.78	254.14	157.36	1561.50
129	E55_Da	NovelBoundary	0	13.32	134.96	19.82	167.23	2.19	40.92	8.05
130	E55a_E56a	KnownJunction	0	270.03	578.02	486.92	635.50	242.15	118.86	1485.85
131	I55	Intron	1	4.98	40.57	7.98	53.72	4.60	22.56	4.55
132	I55_AR1	ActiveIntronRegion	0	8.51	69.59	13.23	101.57	4.89	41.21	7.24
133	ER56a	ExonRegion	0	246.46	623.35	444.45	770.48	242.33	183.40	1442.97
134	E56a_E57a	KnownJunction	0	247.23	484.89	390.30	640.81	232.63	135.23	1019.51
135	ER57a	ExonRegion	0	212.16	519.35	347.46	673.75	215.14	176.70	1043.40
136	E57a_E58a	KnownJunction	0	155.17	584.80	253.06	722.52	121.47	221.12	1021.39
137	ER58a	ExonRegion	0	136.31	368.60	229.52	488.20	115.64	158.05	580.41
138	IG6	Intergenic	0	7.93	8.50	13.42	9.53	23.06	3.43	7.93
139	IG6_AR1	ActiveIntergenicRegion	0	2.65	1.40	9.31	3.87	8.36	2.07	7.86
140	IG6_SR1	SilentIntergenicRegion	0	3.55	4.13	5.93	2.76	10.54	1.10	4.60
141	IG6_AR2	ActiveIntergenicRegion	0	9.05	9.84	14.74	10.96	26.21	3.84	8.32