Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AL645939.6	Gene	0	8.68	34.29	5.02	33.81	11.21	39.99	59.84
2	399247	Transcript	0	4.68	16.53	2.94	16.69	6.56	17.28	36.95
3	IG28	Intergenic	0	0.35	8.72	0.23	1.57	0.28	5.14	0.70
4	IG28_SR1	SilentIntergenicRegion	0	0.35	8.73	0.23	1.58	0.28	5.14	0.70
5	ER1a	ExonRegion	0	3.11	10.26	3.91	15.79	22.71	3.73	97.00
6	E1a_E2a	KnownJunction	0	0.00	4.41	0.69	1.03	1.04	0.00	8.05
7	I1	Intron	0	0.42	6.26	0.60	4.81	1.93	5.40	16.82
8	I1_SR1	SilentIntronRegion	0	0.43	6.27	0.60	4.81	1.93	5.41	16.84
9	E2_Aa	NovelBoundary	0	0.00	13.95	1.42	15.17	0.00	14.20	10.52
10	ER2a	ExonRegion	0	3.36	10.18	2.13	15.07	6.17	4.77	36.41
11	E2_Da	NovelBoundary	0	2.99	12.40	1.32	6.31	2.14	7.05	12.71
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.88	1.65	0.00	0.00	0.67
13	I2	Intron	0	2.28	13.69	1.88	7.91	3.22	10.26	21.81
14	I2_SR1	SilentIntronRegion	0	1.85	15.21	1.36	8.09	2.75	11.21	20.10
15	I2_AR1	ActiveIntronRegion	0	1.94	7.29	1.47	4.27	1.80	2.87	24.01
16	I2_SR2	SilentIntronRegion	0	1.61	14.52	3.97	7.79	4.32	11.06	31.42
17	I2_AR2	ActiveIntronRegion	0	5.22	9.55	5.29	5.84	7.53	6.45	31.78
18	I2_SR3	SilentIntronRegion	0	6.27	12.08	2.60	18.74	5.79	20.29	13.17
19	E3_Aa	NovelBoundary	0	22.60	41.96	5.73	64.21	7.10	65.93	29.90
20	ER3a	ExonRegion	0	10.39	34.26	6.10	42.84	11.23	46.41	60.02
21	E3_Da	NovelBoundary	0	14.74	52.75	6.50	57.57	7.84	63.27	66.30
22	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	2.79	0.00	0.00	3.24
23	I3	Intron	0	9.03	32.97	4.49	37.28	10.47	57.76	32.15
24	I3_AR1	ActiveIntronRegion	0	9.18	33.48	4.57	37.91	10.64	58.77	32.63
25	E4_Aa	NovelBoundary	0	16.89	82.02	3.88	115.38	22.43	119.39	99.37
26	ER4a	ExonRegion	0	7.45	56.11	4.58	66.13	14.43	69.29	76.31
27	E4_Da	NovelBoundary	0	2.29	17.73	2.13	14.03	15.35	13.88	59.39
28	E4a_E5a	KnownJunction	0	0.65	0.00	0.73	0.00	1.13	3.03	15.72
29	I4	Intron	0	10.13	13.34	4.02	10.09	3.51	6.57	20.85
30	I4_SR1	SilentIntronRegion	0	4.50	7.25	2.54	6.44	3.60	5.33	21.74
31	I4_AR1	ActiveIntronRegion	1	36.19	35.62	9.12	25.17	3.43	9.63	15.78
32	I4_AR2	ActiveIntronRegion	1	18.26	41.15	11.77	21.37	2.22	17.00	22.89
33	E5_Aa	NovelBoundary	1	20.70	60.35	8.39	13.63	1.18	22.11	25.11
34	ER5a	ExonRegion	0	15.47	32.97	6.37	21.56	6.84	16.79	44.53
35	E5_Da	NovelBoundary	1	15.09	55.64	5.75	33.35	1.18	21.09	24.89
36	E5a_E6a	KnownJunction	0	0.00	0.00	0.86	0.00	0.00	3.27	14.69
37	I5	Intron	1	22.49	34.83	3.70	21.01	3.77	15.19	13.97
38	I5_AR1	ActiveIntronRegion	1	22.60	35.04	3.72	21.12	3.80	15.29	14.05
39	Ix	Intron	0	17.63	37.97	7.42	13.09	2.25	14.09	15.90
40	Ix_SR2	SilentIntronRegion	0	17.67	38.05	7.44	13.13	2.26	14.13	15.93
41	E6_Aa	NovelBoundary	1	9.70	48.42	7.59	13.14	6.64	44.41	47.68
42	ER6a	ExonRegion	1	11.10	33.64	6.09	16.73	8.62	42.80	49.75