Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HLA-F	Gene	0	58.92	310.63	19.40	219.05	9.32	224.02	57.25
2	376861	Transcript	0	1.76	1.02	2.14	1.25	0.76	1.61	0.95
3	376844	Transcript	0	0.00	0.00	0.34	0.00	0.52	0.00	0.00
4	376848	Transcript	1	5.72	19.49	2.34	76.10	0.00	67.75	2.75
5	334668	Transcript	0	0	0	0	0	0	0	0
6	259951	Transcript	1	2.64	20.13	2.23	7.15	1.67	16.90	9.53
7	399258	Transcript	0	8.57	18.54	1.69	13.97	1.09	7.09	7.08
8	ER1a	ExonRegion	0	0.95	0.00	0.98	1.26	0.28	0.82	0.45
9	E1a_E2a	KnownJunction	0	0.95	0.00	1.61	0.00	1.18	0.00	0.00
10	ER2a	ExonRegion	0	1.75	1.15	0.41	0.00	0.14	0.71	0.39
11	E2_Ab	KnownBoundary	0	1.47	10.51	2.27	1.16	1.06	0.00	2.32
12	ER2b	ExonRegion	0	36.45	133.38	9.12	90.80	0.00	79.35	35.09
13	E2a_E3a	KnownJunction	0	28.41	115.10	5.33	86.34	0.00	102.62	19.83
14	E3_Aa	NovelBoundary	1	74.60	237.73	32.61	99.48	1.15	209.63	3.81
15	ER3a	ExonRegion	0	36.19	185.11	12.45	156.28	5.61	150.37	44.63
16	E3_Da	KnownBoundary	0	71.75	399.85	21.24	315.23	8.35	317.44	75.25
17	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
18	ER3b	ExonRegion	0	61.27	363.19	13.84	309.63	11.29	307.30	74.12
19	E3_Db	NovelBoundary	1	24.35	92.11	7.31	20.59	0.99	29.21	2.45
20	E3b_E4a	KnownJunction	0	75.79	383.93	16.81	347.17	13.83	335.29	88.55
21	ER4a	ExonRegion	0	138.53	706.40	46.71	501.76	22.73	525.10	127.33
22	E4_Ab	KnownBoundary	0	121.40	897.93	57.02	522.29	21.78	589.59	127.55
23	ER4b	ExonRegion	0	171.85	999.29	68.87	633.12	25.66	689.73	172.12
24	E4a_E5a	KnownJunction	0	207.16	990.49	63.19	664.54	48.78	726.41	217.48
25	E4a_E6a	KnownJunction	1	5.72	19.49	2.34	76.10	0.00	67.75	2.75
26	ER5a	ExonRegion	0	146.53	838.00	42.59	567.18	24.45	572.93	142.96
27	E5a_E6a	KnownJunction	0	158.52	860.73	44.95	514.11	21.19	558.67	122.55
28	ER6a	ExonRegion	0	117.31	648.51	36.25	503.39	16.27	457.86	94.59
29	E6_Da	NovelBoundary	1	22.46	95.58	12.70	20.18	2.33	22.19	4.06
30	E6a_E7a	KnownJunction	0	47.07	264.34	17.46	204.10	7.49	199.28	41.17
31	E6a_E10a	NovelJunction	0	6.74	28.16	1.57	27.09	0.00	11.82	1.45
32	E6a_E11a	NovelJunction	0	2.74	15.26	0.00	6.56	0.00	6.81	3.87
33	I6	Intron	1	24.85	115.03	19.12	27.29	0.83	24.50	4.92
34	I6_AR1	ActiveIntronRegion	1	24.94	115.52	19.20	27.39	0.84	24.60	4.94
35	E7_Aa	NovelBoundary	1	13.92	147.96	12.96	30.64	0.00	18.73	5.27
36	ER7a	ExonRegion	0	46.20	289.69	17.41	183.83	5.57	223.35	48.41
37	E7_Da	NovelBoundary	1	18.01	115.46	6.44	18.56	0.00	22.99	0.00
38	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	0.00	0.00
39	E7a_E9a	KnownJunction	0	24.43	200.69	9.69	122.24	3.92	168.81	41.79
40	E7a_E10a	KnownJunction	1	5.24	20.86	0.89	3.90	0.00	7.88	2.62
41	I7	Intron	1	19.97	68.54	12.52	17.47	0.92	11.69	4.13
42	I7_AR1	ActiveIntronRegion	1	20.17	69.36	12.64	17.68	0.93	11.83	4.16
43	E8_Aa	NovelBoundary	1	16.57	110.60	4.31	26.44	0.00	26.56	4.44
44	ER8a	ExonRegion	0	0.00	0.00	0.68	0.00	0.00	0.00	0.00
45	E8_Da	NovelBoundary	1	17.66	98.89	3.03	19.91	0.00	25.43	3.02
46	I8	Intron	1	15.60	66.63	9.24	13.59	0.46	17.11	3.23
47	I8_AR1	ActiveIntronRegion	1	15.78	67.34	9.34	13.74	0.46	17.31	3.26
48	ER9a	ExonRegion	0	44.33	156.97	24.70	105.98	7.77	167.93	35.84
49	E9_Da	NovelBoundary	1	8.60	1.34	9.83	0.00	0.00	0.00	0.85
50	ER9b	ExonRegion	0	3.38	2.92	5.55	3.74	1.46	4.90	2.97
51	E10_Aa	NovelBoundary	1	18.74	53.15	10.12	37.63	16.46	109.05	90.66
52	ER10a	ExonRegion	1	9.76	29.89	1.92	18.18	0.97	8.44	16.52
53	E10_Da	KnownBoundary	1	25.85	67.18	25.18	53.26	17.47	54.86	119.72
54	E10a_E11a	KnownJunction	1	9.91	13.16	1.71	14.79	0.00	1.55	8.93
55	ER10b	ExonRegion	0	2.64	20.13	2.23	7.15	1.67	16.90	9.53
56	E10_Db	NovelBoundary	1	24.60	41.19	8.71	28.12	10.03	17.15	52.37
57	Ix	Intron	0	17.63	37.97	7.42	13.09	2.25	14.09	15.90
58	Ix_SR2	SilentIntronRegion	0	17.67	38.05	7.44	13.13	2.26	14.13	15.93
59	E11_Aa	NovelBoundary	0	11.32	25.01	7.14	7.59	0.00	15.01	15.36
60	ER11a	ExonRegion	0	15.80	42.45	3.36	27.13	3.27	18.05	12.30