Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RNF39	Gene	0	154.56	279.08	127.65	258.40	6.87	22.84	39.75
2	244360	Transcript	0	130.61	194.00	77.24	196.58	4.05	21.90	24.46
3	376751	Transcript	0	3.67	6.57	0.65	2.65	0.00	0.00	0.00
4	376746	Transcript	0	11.10	0.00	6.04	0.00	0.00	0.00	0.00
5	ER1a	ExonRegion	0	8.98	19.05	9.32	28.07	0.66	1.25	3.32
6	E1_Ab	KnownBoundary	0	14.44	40.48	12.88	58.33	0.00	4.15	5.70
7	ER1b	ExonRegion	0	62.10	151.40	42.40	150.96	2.64	11.52	17.24
8	E1_Da	KnownBoundary	0	55.21	160.10	66.84	158.08	8.88	8.17	16.25
9	E1a_E4c	KnownJunction	0	11.10	0.00	6.04	0.00	0.00	0.00	0.00
10	ER1c	ExonRegion	0	71.13	213.16	58.67	183.46	3.81	16.64	24.58
11	E1b_E3a	NovelJunction	0	8.31	26.25	8.13	17.58	0.00	0.00	0.00
12	I1_AR1	ActiveIntronRegion	1	13.30	19.75	11.65	14.14	2.64	9.09	10.53
13	E2a_E3a	KnownJunction	0	83.77	273.49	88.46	209.41	7.63	16.32	25.88
14	ER2a	ExonRegion	0	82.09	281.32	80.02	205.37	6.06	19.35	26.81
15	I2	Intron	1	10.74	29.80	11.32	10.89	3.96	10.34	15.54
16	I2_AR1	ActiveIntronRegion	1	10.83	30.06	11.42	10.97	4.00	10.41	15.69
17	E3_Aa	NovelBoundary	0	20.43	38.59	29.46	19.86	4.40	6.73	19.26
18	ER3a	ExonRegion	0	83.99	277.99	111.00	209.87	7.24	23.67	28.75
19	E3_Da	NovelBoundary	1	48.68	53.12	38.90	25.98	2.31	8.28	16.57
20	E3a_E4a	KnownJunction	0	73.70	275.09	87.34	178.53	6.69	16.13	29.31
21	I3	Intron	0	44.14	39.98	53.82	29.88	2.97	7.71	15.74
22	I3_AR1	ActiveIntronRegion	0	28.85	12.39	40.70	13.63	4.67	2.91	11.66
23	I3_SR1	SilentIntronRegion	0	47.11	43.25	58.60	29.29	2.94	7.51	16.63
24	I3_AR3	ActiveIntronRegion	1	36.20	40.12	31.13	48.37	1.84	13.38	12.94
25	E4_Aa	NovelBoundary	1	28.77	56.80	30.90	39.96	1.18	9.92	4.17
26	ER4a	ExonRegion	0	54.29	157.03	41.75	130.29	3.01	12.34	17.00
27	E4_Da	KnownBoundary	0	105.46	177.67	79.53	160.14	4.47	12.78	27.27
28	E4a_E4b	KnownJunction	0	3.67	6.57	0.65	2.65	0.00	0.00	0.00
29	ER4b	ExonRegion	0	130.61	194.00	77.24	196.58	4.05	21.90	24.46
30	E4_Ab	KnownBoundary	0	361.87	276.09	213.84	305.91	12.45	21.71	57.25
31	ER4c	ExonRegion	0	365.22	422.46	255.82	419.97	8.61	36.76	63.29
32	E4_Ac	KnownBoundary	0	367.73	448.66	283.79	402.47	6.64	40.20	74.88
33	ER4d	ExonRegion	0	312.16	567.90	294.98	500.72	14.21	40.17	88.45
34	E4_Db	KnownBoundary	1	222.13	487.94	249.22	400.43	18.93	25.57	87.64
35	ER4e	ExonRegion	0	213.08	347.03	181.22	331.72	10.87	30.20	56.21