Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AL662782.3	Gene	0	23.34	166.92	16.82	54.39	7.44	146.46	1.91
2	376668	Transcript	0	43.51	418.79	24.77	179.79	6.96	423.25	17.13
3	ER1a	ExonRegion	0	8.38	59.00	2.87	29.22	0.82	80.24	0.51
4	E1a_E2a	KnownJunction	0	0.90	6.49	0.00	1.46	0.00	3.62	0.00
5	I1	Intron	0	2.44	40.40	1.12	14.41	0.69	61.11	0.44
6	I1_AR1	ActiveIntronRegion	0	2.46	40.68	1.13	14.52	0.69	61.55	0.44
7	E2_Aa	NovelBoundary	1	21.83	275.53	4.79	121.88	1.01	349.23	0.89
8	ER2a	ExonRegion	0	8.15	251.18	9.12	104.28	4.41	359.31	1.39
9	E2_Da	NovelBoundary	1	10.11	60.79	3.98	13.38	1.18	23.85	0.00
10	E2a_E3a	KnownJunction	0	9.31	307.95	11.12	145.53	9.52	496.57	2.22
11	E2a_E4a	NovelJunction	1	0.00	1.31	0.89	2.71	0.00	25.59	0.00
12	I2	Intron	0	5.85	35.16	3.83	7.54	0.66	20.85	0.33
13	I2_SR1	SilentIntronRegion	0	5.88	35.37	3.86	7.58	0.67	20.98	0.33
14	E3_Aa	NovelBoundary	0	379.45	2445.98	315.70	992.16	25.77	2697.91	464.70
15	ER3a	ExonRegion	0	20.34	420.86	15.61	175.87	6.71	608.18	1.50
16	E3_Da	NovelBoundary	1	14.72	60.42	4.86	17.61	0.00	23.80	1.56
17	E3a_E4a	KnownJunction	0	24.35	429.80	18.88	160.84	6.32	603.48	1.43
18	E3a_E5a	NovelJunction	1	0.00	1.63	0.00	3.09	0.00	15.52	0.00
19	I3	Intron	1	16.48	84.37	10.13	18.54	1.04	36.49	0.17
20	I3_SR1	SilentIntronRegion	0	16.54	84.63	10.17	18.60	1.04	36.61	0.17
21	E4_Aa	NovelBoundary	1	17.46	70.67	9.92	11.97	1.73	28.46	0.00
22	ER4a	ExonRegion	0	29.48	512.24	20.74	195.66	10.61	593.03	2.68
23	E4a_E5a	KnownJunction	0	354.14	2183.29	176.55	1052.44	8.58	1481.76	207.28
24	ER5a	ExonRegion	0	33.97	588.51	21.22	224.06	11.19	570.77	2.87
25	E5a_E6a	KnownJunction	0	33.38	369.72	16.50	130.74	13.95	348.96	0.66
26	I5	Intron	1	8.76	53.74	5.21	6.54	0.35	12.73	0.26
27	I5_SR1	SilentIntronRegion	1	8.79	53.91	5.22	6.56	0.35	12.77	0.26
28	ER6a	ExonRegion	0	15.80	171.57	9.17	65.10	10.95	196.52	0.21
29	E6_Da	NovelBoundary	1	5.21	63.55	8.77	7.10	4.89	18.38	0.60
30	E6a_E7a	KnownJunction	1	3.61	31.32	2.96	22.21	0.00	94.90	0.00
31	I6	Intron	0	17.91	94.83	12.51	22.16	5.96	45.40	1.38
32	I6_SR1	SilentIntronRegion	0	17.95	95.02	12.53	22.21	5.98	45.49	1.38
33	E7_Aa	NovelBoundary	1	24.78	116.67	14.73	27.80	5.28	29.13	0.00
34	ER7a	ExonRegion	0	23.87	112.28	17.26	29.82	7.39	64.94	1.93
35	IG7	Intergenic	0	23.27	62.22	13.87	15.77	3.67	44.82	0.59
36	IG7_AR1	ActiveIntergenicRegion	0	48.33	94.69	19.69	26.28	6.92	60.31	0.93
37	IG7_SR1	SilentIntergenicRegion	0	11.77	47.37	11.21	10.96	2.17	37.75	0.43