Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MICA	Gene	0	41.03	88.96	38.52	99.38	41.93	80.08	65.82
2	376222	Transcript	0	13.15	61.85	7.91	64.08	16.27	59.15	8.40
3	364810	Transcript	0	0.90	1.74	0.84	0.64	1.60	0.23	2.52
4	399172	Transcript	1	19.52	11.79	16.69	12.38	26.03	8.21	7.49
5	376219	Transcript	0	34.15	235.55	43.10	265.71	32.64	233.13	94.53
6	376218	Transcript	0	0.55	1.33	0.24	0.02	2.69	0.01	0.00
7	IG4_AR3	ActiveIntergenicRegion	0	17.27	5.13	9.68	5.70	14.12	5.39	4.83
8	ER1a	ExonRegion	1	16.13	10.44	10.79	13.13	11.05	7.96	3.55
9	E1_Da	NovelBoundary	1	13.85	31.37	2.95	26.01	5.90	34.06	6.92
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.86	1.63	3.53	0.00	4.94
11	E1a_E5a	KnownJunction	0	23.32	167.40	12.95	174.55	36.72	160.29	21.65
12	E1a_E7a	NovelJunction	0	1.79	3.70	0.00	8.32	1.18	0.00	0.00
13	ER1b	ExonRegion	0	20.91	126.26	10.98	137.43	34.94	126.28	18.89
14	ER2a	ExonRegion	0	1.06	4.60	1.95	0.95	1.63	0.93	3.79
15	E2_Da	NovelBoundary	0	3.77	2.23	0.00	1.35	15.01	1.37	14.55
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E2a_E5a	NovelJunction	1	0.00	5.02	0.50	0.00	0.00	8.52	0.00
18	ER3a	ExonRegion	0	2.52	2.34	0.53	0.00	1.24	0.01	1.35
19	E3_Ab	KnownBoundary	0	3.87	7.41	0.00	0.00	0.95	0.00	0.89
20	ER3b	ExonRegion	0	10.06	10.05	10.63	16.33	10.50	6.96	23.35
21	E3_Ac	KnownBoundary	1	41.36	35.15	56.73	75.86	59.06	26.02	102.05
22	ER3c	ExonRegion	1	29.29	33.61	40.47	80.62	22.25	23.19	84.95
23	E3a_E5a	KnownJunction	1	5.32	21.33	8.13	37.20	6.89	9.11	41.19
24	ER4a	ExonRegion	0	1.10	2.66	0.49	0.05	5.39	0.02	0.00
25	E4_Da	NovelBoundary	1	19.78	3.73	6.96	3.52	29.05	5.49	3.04
26	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER5a	ExonRegion	0	53.94	230.17	67.75	287.33	56.06	240.90	145.49
28	E5_Da	NovelBoundary	0	7.84	27.11	6.04	13.06	17.17	15.95	10.75
29	E5a_E6a	KnownJunction	1	54.34	204.47	85.23	255.33	58.28	207.22	184.57
30	E5a_E6b	KnownJunction	0	0.00	1.31	0.89	0.00	0.00	0.00	0.89
31	E5a_E6c	KnownJunction	0	0.00	7.70	0.00	4.55	1.04	9.19	0.00
32	E5a_E7a	NovelJunction	1	2.34	3.94	5.92	35.46	2.28	58.91	3.48
33	I5	Intron	1	8.44	19.16	4.91	6.22	9.27	9.47	7.81
34	I5_AR1	ActiveIntronRegion	1	8.50	19.29	4.94	6.26	9.34	9.53	7.87
35	ER6a	ExonRegion	0	116.54	254.36	126.37	315.16	107.31	234.84	254.11
36	E6_Ab	KnownBoundary	0	121.39	268.97	102.04	309.30	78.20	212.39	246.83
37	ER6b	ExonRegion	0	122.56	372.28	117.33	410.51	89.71	292.53	288.66
38	E6_Ac	KnownBoundary	1	109.62	434.40	109.76	404.04	152.29	321.28	278.80
39	ER6c	ExonRegion	0	175.91	478.46	145.60	493.15	154.87	335.35	340.25
40	E6a_E7a	KnownJunction	0	167.67	375.81	131.92	372.34	189.75	319.27	305.30
41	E6a_E8a	NovelJunction	0	0.90	1.44	0.00	11.49	0.00	3.03	1.48
42	ER7a	ExonRegion	0	81.21	219.57	73.47	257.68	88.78	209.79	200.80
43	E7a_E8a	KnownJunction	0	59.32	224.80	65.86	296.00	80.89	228.95	157.93
44	E7a_E9a	NovelJunction	1	1.02	0.00	0.88	0.00	0.00	0.00	12.86
45	ER8a	ExonRegion	0	48.44	186.39	62.35	224.09	67.34	183.55	154.01
46	E8_Da	KnownBoundary	1	12.08	23.64	16.96	24.03	16.32	24.66	48.98
47	E8a_E8b	KnownJunction	0	34.15	235.55	43.10	265.71	32.64	233.13	94.53
48	E8_Ab	KnownBoundary	1	7.84	20.73	11.05	45.70	17.06	42.40	31.73
49	ER8b	ExonRegion	1	32.66	105.69	51.82	132.80	51.02	117.08	125.14
50	ER8c	ExonRegion	0	62.05	219.58	72.81	221.76	48.55	210.68	131.89
51	E8b_E9a	KnownJunction	0	75.47	290.80	80.95	251.24	56.57	249.37	132.98
52	E9_Aa	NovelBoundary	1	27.89	0.00	30.26	0.00	1.15	0.00	0.00
53	ER9a	ExonRegion	0	55.66	226.21	57.80	189.68	49.52	214.65	115.08
54	E9_Da	KnownBoundary	0	64.46	150.48	52.01	117.55	52.95	147.67	80.49
55	ER9b	ExonRegion	0	33.58	94.37	36.55	73.10	29.77	110.57	58.83
56	E9_Db	KnownBoundary	0	30.53	67.44	36.18	56.67	42.92	70.86	40.93
57	ER9c	ExonRegion	1	31.46	48.25	31.47	39.90	23.20	42.41	20.23
58	E9_Dc	KnownBoundary	0	20.76	21.33	12.72	21.56	13.79	18.87	9.86
59	ER9d	ExonRegion	1	39.03	22.26	32.49	24.76	52.06	16.42	14.10
60	IG5_SR1	SilentIntergenicRegion	0	6.44	5.61	9.62	23.00	5.67	14.25	6.21
61	IG5_AR1	ActiveIntergenicRegion	0	9.69	8.98	9.89	26.14	7.64	17.98	4.88