Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	VARSL	Gene	0	35.27	34.96	43.32	32.81	76.52	20.81	107.94
2	321897	Transcript	0	24.15	41.22	36.28	24.88	82.82	19.81	76.94
3	376306	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	11.85	14.09	21.63	15.66	22.29	9.64	32.29
5	E1a_E2a	KnownJunction	0	35.13	33.50	44.42	34.84	63.35	12.46	77.36
6	ER2a	ExonRegion	0	33.90	47.08	61.20	36.22	79.13	22.77	80.13
7	E2a_E3a	KnownJunction	0	33.75	53.59	67.58	28.12	96.02	25.54	73.15
8	ER3a	ExonRegion	0	38.16	45.13	48.99	31.80	78.62	21.01	80.15
9	E3a_E4a	KnownJunction	0	33.70	37.31	51.91	21.67	105.79	20.37	78.77
10	ER4a	ExonRegion	0	28.20	39.67	40.93	26.06	95.92	19.91	81.61
11	E4a_E5a	KnownJunction	0	28.89	34.91	34.45	24.68	82.51	27.55	85.31
12	ER5a	ExonRegion	0	38.30	32.22	47.57	26.37	116.30	26.04	92.04
13	E5a_E6a	KnownJunction	0	42.04	33.73	48.69	38.82	139.22	26.16	96.05
14	ER6a	ExonRegion	0	49.09	54.47	52.02	38.85	147.61	24.16	125.65
15	E6a_E7a	KnownJunction	0	57.18	52.07	48.46	39.04	159.55	31.89	135.19
16	ER7a	ExonRegion	0	67.57	57.62	63.38	39.84	139.82	26.52	140.78
17	E7a_E8a	KnownJunction	0	78.48	57.38	69.48	45.78	129.88	33.04	116.51
18	ER8a	ExonRegion	0	68.45	55.74	60.56	44.68	145.22	22.98	125.98
19	E8a_E9a	KnownJunction	0	70.97	49.97	77.23	42.37	117.68	28.06	133.63
20	ER9a	ExonRegion	0	59.66	60.01	68.74	41.60	110.02	28.83	110.08
21	E9_Da	KnownBoundary	0	64.76	64.00	64.88	41.91	130.57	27.60	111.08
22	E9a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER9b	ExonRegion	0	45.44	45.90	41.20	30.35	79.03	18.55	68.77
24	E9_Db	NovelBoundary	1	26.89	13.69	8.97	10.00	17.15	3.32	9.26
25	E9b_E10a	KnownJunction	1	24.63	34.26	28.87	11.78	68.01	13.35	69.97
26	ER10a	ExonRegion	0	21.67	38.83	39.10	29.80	83.51	24.63	87.01
27	E10a_E11a	KnownJunction	1	11.60	41.40	36.80	26.01	98.76	21.60	78.01
28	ER11a	ExonRegion	0	17.41	45.71	35.44	26.45	84.79	20.93	80.95
29	E11_Ab	KnownBoundary	0	27.94	46.40	34.59	30.26	78.93	26.53	83.65
30	ER11b	ExonRegion	0	25.82	40.42	30.16	31.49	69.82	14.46	65.77
31	E11a_E12a	KnownJunction	0	26.30	34.91	24.85	26.90	73.86	9.76	52.57
32	E11a_E13a	NovelJunction	0	4.24	0.00	2.39	5.96	0.97	4.72	13.90
33	ER12a	ExonRegion	0	15.44	33.90	21.54	24.14	59.35	17.46	56.67
34	E12a_E13a	KnownJunction	0	15.39	25.72	27.91	18.45	54.61	15.49	59.95
35	ER13a	ExonRegion	0	28.41	34.16	37.29	30.90	63.71	21.15	65.20
36	E13a_E14a	KnownJunction	0	23.28	24.14	32.32	29.10	44.63	16.70	61.40
37	ER14a	ExonRegion	0	18.55	28.40	31.85	31.34	53.02	13.47	52.82
38	E14a_E15a	KnownJunction	0	16.87	31.37	36.44	35.08	41.24	10.45	47.14
39	ER15a	ExonRegion	0	17.76	27.80	36.22	28.15	46.57	14.12	59.37
40	E15a_E16a	KnownJunction	0	27.64	23.38	44.81	30.83	60.65	13.43	66.41
41	ER16a	ExonRegion	1	38.82	30.44	43.85	39.08	82.03	10.92	79.97
42	E16a_E17a	KnownJunction	1	52.51	32.84	53.50	54.16	106.11	5.74	86.48
43	E17_Aa	NovelBoundary	1	25.92	1.52	19.79	1.68	0.00	0.00	4.54
44	ER17a	ExonRegion	0	65.61	45.91	63.04	52.41	115.52	23.39	94.84
45	E17a_E18a	KnownJunction	0	81.05	57.88	70.08	52.48	113.26	15.79	106.97
46	ER18a	ExonRegion	0	87.47	57.68	85.32	42.85	109.60	22.91	120.32
47	E18a_E19a	KnownJunction	0	80.81	51.33	65.31	38.88	114.02	26.37	112.72
48	ER19a	ExonRegion	0	73.23	38.83	56.84	44.91	119.23	24.82	94.90
49	E19a_E20a	KnownJunction	0	59.05	42.80	66.99	30.97	114.02	22.91	92.94
50	ER20a	ExonRegion	0	49.42	44.89	72.55	51.23	122.00	29.34	111.45
51	E20a_E21a	KnownJunction	0	56.83	60.77	84.10	65.32	123.52	48.03	117.12
52	I20	Intron	1	0.00	0.58	0.34	0.00	0.00	0.00	33.22
53	I20_SR1	SilentIntronRegion	1	0.00	0.59	0.35	0.00	0.00	0.00	33.67
54	ER21a	ExonRegion	0	74.78	59.79	106.45	66.70	145.07	41.01	196.25
55	E21a_E22a	KnownJunction	0	84.94	60.00	114.22	61.14	148.11	45.85	257.78
56	ER22a	ExonRegion	0	65.79	56.96	94.59	65.98	157.09	42.79	280.41
57	E22a_E23a	KnownJunction	0	53.01	46.26	76.85	62.74	127.09	37.95	248.52
58	ER23a	ExonRegion	0	71.56	60.70	93.99	54.49	151.46	32.41	284.69
59	E23a_E24a	KnownJunction	0	59.42	48.97	61.23	39.42	129.86	23.93	221.35
60	E23a_E25a	NovelJunction	1	5.61	6.41	2.40	9.62	1.01	5.65	19.88
61	ER24a	ExonRegion	0	41.25	41.33	46.39	34.96	93.11	17.60	194.71
62	E24a_E25a	KnownJunction	0	39.44	33.10	37.03	36.14	57.06	12.38	130.10
63	ER25a	ExonRegion	0	26.28	22.62	24.98	23.05	47.35	12.27	117.77
64	E25a_E26a	KnownJunction	1	22.73	5.44	9.67	2.82	21.99	3.83	74.08
65	E25a_E27a	NovelJunction	0	3.25	13.40	5.88	12.25	0.00	13.67	14.19
66	ER26a	ExonRegion	0	26.16	8.41	17.95	9.54	35.35	3.21	81.32
67	E26a_E27a	KnownJunction	0	23.50	14.40	26.79	15.69	34.53	3.22	97.74
68	ER27a	ExonRegion	0	32.09	30.27	30.97	31.80	53.12	17.41	134.46
69	E27a_E28a	KnownJunction	0	33.76	44.79	50.71	41.18	79.09	43.50	211.23
70	ER28a	ExonRegion	0	38.67	51.34	53.69	52.01	72.43	39.01	203.73
71	E28a_E29a	KnownJunction	0	38.59	52.57	53.69	67.43	84.33	51.35	231.17
72	ER29a	ExonRegion	0	28.70	34.57	41.39	40.53	77.21	38.08	180.65