Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C6orf134	Gene	0	35.78	35.51	22.03	45.23	42.89	23.80	18.56
2	318999	Transcript	0	0.00	0.00	0.23	0.00	1.13	0.00	0.00
3	376478	Transcript	0	0	0	0	0	0	0	0
4	376485	Transcript	0	0	0	0	0	0	0	0
5	376479	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	319027	Transcript	0	0	0	0	0	0	0	0
7	376483	Transcript	0	0	0	0	0	0	0	0
8	329992	Transcript	0	0	0	0	0	0	0	0
9	330083	Transcript	0	4.35	11.10	3.04	18.61	3.60	7.52	1.51
10	ER1a	ExonRegion	0	0.00	0.00	0.23	0.00	1.13	0.00	0.00
11	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E1_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1_Af	KnownBoundary	0	5.87	1.00	6.34	3.58	23.84	1.07	6.76
15	ER1b	ExonRegion	0	0.93	0.00	1.85	0.66	7.59	0.00	1.63
16	ER1c	ExonRegion	0	3.84	0.00	3.39	2.49	15.39	0.00	4.72
17	ER1d	ExonRegion	0	3.84	0.00	4.06	4.99	21.06	1.23	5.40
18	ER1e	ExonRegion	0	5.19	3.49	6.60	6.55	21.76	1.23	8.35
19	ER1f	ExonRegion	0	41.18	26.85	27.41	49.58	40.42	24.49	22.75
20	E1_Da	KnownBoundary	0	1.67	3.70	0.66	4.06	0.00	0.00	0.89
21	E1a_E2a	KnownJunction	0	4.24	10.27	3.69	18.42	4.52	8.90	3.74
22	ER1g	ExonRegion	0	3.10	10.93	2.61	15.96	1.59	6.98	1.53
23	E1b_E2a	KnownJunction	0	5.61	11.27	3.48	21.27	5.60	8.07	1.49
24	ER2a	ExonRegion	0	16.82	34.12	13.25	59.04	17.66	39.53	17.36
25	E2a_E3a	KnownJunction	0	29.46	46.92	26.02	92.73	19.00	60.06	33.21
26	ER3a	ExonRegion	0	50.74	70.01	40.76	97.91	65.07	64.91	36.03
27	E3a_E4a	KnownJunction	0	54.88	59.61	56.16	93.33	100.95	63.14	37.98
28	ER4a	ExonRegion	0	63.00	99.72	60.22	123.08	104.14	76.11	44.11
29	E4a_E5a	KnownJunction	0	75.49	130.75	64.87	122.34	90.11	97.44	46.81
30	ER5a	ExonRegion	0	113.51	138.85	90.83	156.23	126.37	109.52	54.39
31	E5a_E6a	KnownJunction	0	142.47	130.25	124.63	194.65	159.80	112.75	70.85
32	E6_Aa	NovelBoundary	1	61.97	1.37	54.28	0.00	0.92	0.00	0.89
33	ER6a	ExonRegion	0	148.35	136.78	114.46	164.90	175.29	104.01	72.68
34	E6a_E7a	KnownJunction	0	155.57	129.99	87.63	130.66	174.23	104.79	54.83
35	ER7a	ExonRegion	0	135.66	119.00	98.90	139.85	144.91	98.51	60.85
36	E7_Da	NovelBoundary	0	14.57	6.20	3.39	6.37	7.75	2.47	5.26
37	E7a_E8a	KnownJunction	0	85.39	67.86	75.01	71.79	63.76	44.89	47.67
38	E7a_E9a	KnownJunction	1	6.54	22.72	9.23	45.05	16.62	14.31	1.46
39	ER8a	ExonRegion	0	69.49	60.27	58.44	62.80	87.99	44.85	37.55
40	E8_Da	NovelBoundary	0	25.52	14.19	10.38	6.26	10.49	2.84	6.39
41	E8a_E9a	KnownJunction	0	29.49	38.80	27.53	36.90	41.36	28.25	19.03
42	I8	Intron	1	15.66	15.94	9.11	9.33	9.42	2.77	9.84
43	I8_AR1	ActiveIntronRegion	1	15.68	15.96	9.12	9.34	9.44	2.77	9.85
44	E9_Aa	NovelBoundary	1	7.76	17.76	2.46	4.20	8.83	1.58	5.53
45	ER9a	ExonRegion	0	27.39	45.39	26.26	61.29	59.21	26.15	17.74
46	E9a_E10a	KnownJunction	0	30.41	22.09	21.81	36.46	36.26	22.78	18.93
47	E9a_E11a	NovelJunction	0	10.28	19.31	8.22	20.43	20.52	17.80	6.25
48	ER10a	ExonRegion	0	19.77	17.73	11.39	20.99	29.18	15.86	8.94
49	E10_Da	KnownBoundary	0	10.48	8.12	3.55	8.37	2.10	1.10	5.78
50	E10a_E10b	KnownJunction	0	0.00	0.00	0.50	0.00	2.97	3.99	0.00
51	E10a_E11a	KnownJunction	0	7.09	16.18	6.08	12.52	14.43	11.18	3.14
52	ER10b	ExonRegion	1	42.86	20.67	12.04	26.29	32.46	7.27	13.99
53	E10_Ab	KnownBoundary	1	17.12	13.03	8.77	32.08	28.91	3.75	16.07
54	ER10c	ExonRegion	0	28.59	28.16	13.77	35.61	40.28	10.07	17.97
55	ER10d	ExonRegion	0	2.63	1.47	2.15	2.86	5.10	1.84	1.43
56	I10	Intron	0	16.85	7.43	6.97	6.08	15.93	3.64	6.00
57	I10_AR1	ActiveIntronRegion	0	9.36	4.62	5.07	4.42	10.83	1.67	7.17
58	I10_SR1	SilentIntronRegion	0	10.40	7.53	5.50	5.22	12.91	3.35	6.84
59	I10_AR2	ActiveIntronRegion	0	26.53	8.72	9.29	7.70	21.27	4.89	4.69
60	ER11a	ExonRegion	0	18.66	24.56	14.28	32.09	25.44	21.93	6.43
61	E11_Da	NovelBoundary	0	14.72	7.49	8.08	7.86	27.92	2.89	6.21
62	E11a_E12a	KnownJunction	1	22.28	23.36	25.29	42.15	34.37	27.01	10.16
63	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	I11	Intron	0	6.66	4.01	0.91	1.00	27.89	4.88	2.76
65	I11_SR1	SilentIntronRegion	0	5.83	3.01	0.68	1.25	22.26	5.45	2.95
66	I11_AR1	ActiveIntronRegion	0	8.45	4.86	1.27	1.25	39.81	6.13	3.37
67	E12_Aa	NovelBoundary	0	18.73	7.46	11.67	7.07	16.64	4.29	6.74
68	I11_SR2	SilentIntronRegion	0	7.43	4.86	1.35	1.25	23.35	5.52	3.37
69	I11_AR2	ActiveIntronRegion	0	4.18	3.71	0.41	0.07	14.35	1.29	1.20
70	ER12a	ExonRegion	1	19.91	20.48	27.55	45.44	34.05	41.60	10.46
71	E12_Da	NovelBoundary	0	18.61	32.13	5.81	15.06	59.06	16.21	12.48
72	E12a_E13a	KnownJunction	1	20.38	18.13	23.71	39.31	25.04	46.28	10.62
73	I12	Intron	0	16.61	14.60	12.65	10.29	31.59	6.49	9.69
74	I12_AR1	ActiveIntronRegion	0	16.70	14.67	12.72	10.35	31.76	6.52	9.74
75	ER13a	ExonRegion	0	21.37	34.70	16.85	47.14	23.00	36.52	10.82
76	E13_Da	KnownBoundary	0	17.37	36.10	11.94	45.11	33.22	28.78	11.09
77	E13a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	ER13b	ExonRegion	0	15.11	31.68	16.02	45.31	28.54	32.67	8.36
79	E13_Ab	KnownBoundary	0	13.05	20.41	14.63	35.38	34.19	22.48	4.92
80	ER13c	ExonRegion	0	9.81	15.39	6.20	17.94	13.04	9.63	5.73
81	ER13d	ExonRegion	0	4.46	3.64	2.21	3.74	2.65	5.56	0.90
82	ER13e	ExonRegion	0	1.66	0.81	0.45	2.91	1.35	3.68	0.45
83	ER13f	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00