Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 CDYL Gene 0 69.80 135.81 76.42 73.41 264.01 58.93 75.45 2 328908 Transcript 0 0 0 0 0 0 0 0 3 343762 Transcript 0 0 0 0 0 0 0 0 4 397586 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 397588 Transcript 0 28.07 78.57 27.33 48.18 5.26 37.81 34.73 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER3a ExonRegion 0 0.04 0.00 0.00 0.00 0.30 0.00 0.00 11 E3a_E5a KnownJunction 0 1.20 0.00 0.00 0.00 0.00 0.00 0.00 12 I3_AR1 ActiveIntronRegion 0 0.00 0.00 0.17 0.24 185.53 0.00 0.00 13 ER4a ExonRegion 0 5.13 22.21 3.13 10.56 0.15 7.84 5.16 14 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E4b_E5a KnownJunction 0 28.47 84.25 27.56 48.98 3.23 41.30 33.71 16 ER4b ExonRegion 0 27.66 72.89 27.10 47.38 7.29 34.33 35.75 17 I4_AR2 ActiveIntronRegion 0 16.33 5.77 8.98 0.00 3.64 0.00 4.72 18 I4_AR13 ActiveIntronRegion 1 19.25 4.60 6.82 2.09 10.74 0.00 2.29 19 ER5a ExonRegion 0 68.64 220.98 79.61 116.54 296.50 88.71 91.44 20 E5a_E6a KnownJunction 0 42.29 191.36 56.07 104.87 278.11 44.03 83.87 21 ER6a ExonRegion 0 99.51 234.60 116.22 109.81 352.66 79.14 116.35 22 E6a_E7a KnownJunction 0 89.11 208.23 109.43 85.99 284.24 86.43 95.86 23 ER7a ExonRegion 0 106.42 221.43 119.76 107.08 350.53 79.04 108.03 24 E7a_E8a KnownJunction 0 128.10 282.37 162.15 138.38 523.23 106.69 130.47 25 ER8a ExonRegion 0 137.26 269.01 134.11 137.51 424.75 95.06 131.26 26 E8a_E9a KnownJunction 0 88.94 245.30 84.63 139.71 399.00 109.61 111.58 27 I8 Intron 0 19.96 13.46 11.82 6.60 8.57 3.32 5.38 28 I8_SR1 SilentIntronRegion 0 17.28 10.23 12.14 5.63 6.29 2.25 4.53 29 I8_AR5 ActiveIntronRegion 0 21.74 22.59 16.16 11.17 11.68 3.20 10.47 30 I8_SR3 SilentIntronRegion 0 26.67 14.91 15.28 7.49 13.02 2.96 6.26 31 I8_SR5 SilentIntronRegion 0 22.26 19.21 14.28 8.01 12.91 6.12 7.35 32 I8_AR10 ActiveIntronRegion 1 30.28 9.98 16.50 5.05 12.39 4.06 4.64 33 I8_SR6 SilentIntronRegion 0 37.26 16.07 16.26 6.94 11.76 4.23 7.58 34 E9_Aa NovelBoundary 1 23.02 10.69 7.07 6.83 4.06 2.28 4.84 35 ER9a ExonRegion 0 102.50 222.60 77.36 111.59 403.74 72.40 108.96 36 E9_Da NovelBoundary 1 111.77 35.70 32.92 22.46 9.68 8.12 10.29 37 E9a_E10a KnownJunction 0 40.87 177.96 57.74 94.58 300.47 55.23 106.25 38 I9 Intron 1 39.23 30.44 17.10 18.92 12.10 12.80 4.14 39 I9_SR1 SilentIntronRegion 1 41.90 26.88 16.90 17.83 12.20 11.89 4.28 40 I9_AR1 ActiveIntronRegion 1 30.24 43.24 17.96 22.97 11.86 16.09 3.68 41 E10_Aa NovelBoundary 1 21.70 33.84 12.72 11.13 10.00 9.59 1.79 42 ER10a ExonRegion 0 77.81 103.06 87.59 62.96 303.50 58.25 78.92