Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TNIP1	Gene	0	994.45	1673.54	407.78	288.10	94.36	700.26	536.43
2	389378	Transcript	0	17.51	20.81	6.28	4.37	0.71	13.99	6.42
3	315050	Transcript	0	41.04	145.58	29.99	39.94	8.27	69.31	75.64
4	IG42	Intergenic	0	12.00	7.68	4.45	2.77	1.34	2.46	0.32
5	IG42_AR8	ActiveIntergenicRegion	0	11.84	14.15	7.64	9.85	7.61	9.33	0.78
6	IG42_AR5	ActiveIntergenicRegion	0	12.36	6.85	6.58	5.36	2.38	2.84	0.11
7	IG42_SR5	SilentIntergenicRegion	0	13.72	5.44	3.09	0.33	1.93	3.55	0.42
8	IG42_AR4	ActiveIntergenicRegion	0	9.90	11.31	6.84	2.88	1.83	4.01	0.97
9	IG42_AR3	ActiveIntergenicRegion	0	6.11	8.42	1.89	2.24	0.00	4.03	0.43
10	IG42_AR2	ActiveIntergenicRegion	0	77.12	44.44	2.80	2.49	1.62	7.43	0.38
11	IG42_SR2	SilentIntergenicRegion	0	21.31	11.04	5.73	1.70	0.13	2.24	0.20
12	ER1a	ExonRegion	0	7.19	6.56	1.91	1.28	0.50	5.79	0.72
13	E1_Ab	KnownBoundary	0	6.03	11.95	6.16	8.40	4.22	6.91	6.09
14	ER1b	ExonRegion	0	98.25	151.61	65.93	46.04	10.52	98.45	88.10
15	E1a_E2a	KnownJunction	0	34.58	133.22	30.44	39.47	9.57	67.03	78.42
16	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E1a_E3a	NovelJunction	1	14.32	79.50	15.82	36.65	0.00	60.30	11.28
18	ER2a	ExonRegion	0	47.49	157.93	29.53	40.40	6.96	71.60	72.86
19	ER2b	ExonRegion	0	502.99	810.54	220.79	111.14	41.16	369.40	306.69
20	E2a_E3a	KnownJunction	0	836.00	1166.01	307.18	162.76	50.49	578.47	453.56
21	ER3a	ExonRegion	0	717.54	1717.32	376.86	247.37	66.80	732.95	501.46
22	E3a_E4a	KnownJunction	0	1117.56	2162.17	462.74	315.77	64.89	927.62	598.38
23	ER4a	ExonRegion	0	861.09	2071.63	402.26	301.62	81.38	804.10	623.98
24	E4a_E5a	KnownJunction	0	629.64	1797.96	340.71	271.99	72.71	646.54	567.70
25	E4a_E6a	NovelJunction	0	12.65	27.90	9.87	7.91	2.01	29.88	4.37
26	ER5a	ExonRegion	0	603.29	1915.74	318.94	270.75	78.04	671.26	515.61
27	E5a_E6a	KnownJunction	0	710.16	1778.66	337.83	238.35	92.14	652.71	492.54
28	E5a_E7a	NovelJunction	1	13.13	23.04	4.81	13.60	0.00	46.31	0.67
29	ER6a	ExonRegion	0	891.30	1969.04	375.50	283.22	84.95	674.03	534.82
30	E6a_E7a	KnownJunction	0	1152.39	2334.64	479.09	330.62	119.64	797.70	674.25
31	ER7a	ExonRegion	0	1132.89	2541.01	511.16	392.96	114.16	874.12	683.16
32	E7a_E8a	KnownJunction	0	1058.18	2302.59	460.70	349.91	114.13	843.25	597.55
33	ER8a	ExonRegion	0	1149.15	2427.07	493.29	423.60	140.47	886.47	741.63
34	E8a_E9a	KnownJunction	0	936.84	2227.53	465.48	382.31	123.22	736.89	668.88
35	E8a_E10a	NovelJunction	0	19.48	94.60	7.14	23.62	0.00	53.97	0.00
36	ER9a	ExonRegion	0	974.43	2404.04	459.39	416.13	131.89	765.27	708.44
37	E9a_E10a	KnownJunction	0	1425.12	2838.55	648.59	504.08	206.46	994.27	1013.93
38	E9a_E12a	NovelJunction	1	11.97	29.66	7.53	14.01	0.00	26.45	0.66
39	ER10a	ExonRegion	0	1712.34	3092.01	714.15	532.21	208.84	1027.96	1080.63
40	E10a_E11a	KnownJunction	0	1752.04	3130.27	658.52	532.10	191.43	992.26	994.94
41	ER11a	ExonRegion	0	1768.52	3030.57	726.15	528.58	183.85	1073.18	1037.59
42	E11a_E12a	KnownJunction	0	1537.96	2840.34	706.66	462.55	146.34	1180.99	935.53
43	ER12a	ExonRegion	0	1860.49	3104.42	771.07	509.71	190.05	1142.43	938.13
44	E12a_E13a	KnownJunction	0	2478.16	3533.25	978.49	636.53	239.01	1540.69	1213.27
45	ER13a	ExonRegion	0	2240.28	3106.19	886.18	572.07	179.17	1305.40	965.51
46	E13_Da	NovelBoundary	1	1123.92	9.69	400.24	7.83	0.00	2.39	0.00
47	E13a_E14a	KnownJunction	0	2673.04	3115.06	1023.87	567.83	209.04	1324.71	1032.29
48	ER14a	ExonRegion	0	2344.57	3308.04	930.84	587.31	222.33	1367.65	1132.46
49	E14a_E15a	KnownJunction	0	2706.56	3272.42	989.07	593.11	115.96	1417.98	1100.97
50	ER15a	ExonRegion	0	1972.55	3124.45	723.34	501.94	104.27	1288.11	955.55
51	E15a_E16a	KnownJunction	0	1154.94	2604.26	439.73	395.34	107.68	982.67	729.86
52	E15a_E17a	NovelJunction	0	22.60	29.48	21.73	17.66	3.14	21.92	17.83
53	E15a_E18a	NovelJunction	0	25.07	15.45	10.13	5.04	0.00	26.72	0.75
54	ER16a	ExonRegion	0	839.25	1439.73	305.94	239.00	84.10	583.59	453.26
55	E16a_E17a	KnownJunction	0	464.85	522.22	193.17	109.20	39.01	263.44	241.46
56	E16a_E18a	NovelJunction	0	19.83	14.69	2.11	5.55	0.00	19.03	0.00
57	ER17a	ExonRegion	0	638.52	976.47	263.63	167.58	61.61	450.89	373.52
58	E17a_E18a	KnownJunction	0	707.15	1215.13	291.19	186.87	51.87	574.77	409.96
59	ER18a	ExonRegion	0	1117.88	1512.31	430.99	299.07	97.92	823.17	525.28
60	ER18b	ExonRegion	0	45.34	55.88	16.93	11.85	1.62	36.17	18.55
61	IG41	Intergenic	0	76.47	262.47	25.93	107.60	144.98	494.48	11.63
62	IG41_SR2	SilentIntergenicRegion	0	60.88	24.62	8.37	14.49	0.80	17.35	5.45
63	IG41_AR2	ActiveIntergenicRegion	0	23.27	12.97	2.87	6.46	0.37	11.52	1.40
64	IG41_SR1	SilentIntergenicRegion	0	21.89	11.57	3.10	6.44	0.00	17.87	2.15
65	IG41_AR1	ActiveIntergenicRegion	0	100.79	403.64	38.17	164.22	227.80	769.32	16.69