Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ARHGAP26	Gene	0	213.04	100.51	179.75	114.28	54.21	59.07	45.78
2	378004	Transcript	0	26.53	24.49	16.12	16.87	9.48	7.21	19.22
3	274498	Transcript	1	87.16	48.71	80.08	76.51	20.25	43.54	9.24
4	378013	Transcript	0	3.70	1.72	9.11	2.11	0.00	0.34	0.19
5	IG18_AR4	ActiveIntergenicRegion	0	0.93	0.00	0.73	0.00	28.47	0.00	3.49
6	IG18_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	15.13	0.00	2.61
7	IG18_AR7	ActiveIntergenicRegion	0	0.31	0.00	0.28	0.08	18.30	0.00	1.56
8	IG18_AR9	ActiveIntergenicRegion	0	0.40	0.00	0.36	0.43	9.68	0.00	1.16
9	ER1a	ExonRegion	0	12.82	30.33	4.88	23.63	0.14	12.02	2.62
10	E1_Ab	KnownBoundary	0	12.80	45.53	6.67	30.02	0.00	13.19	4.00
11	ER1b	ExonRegion	0	165.61	143.69	123.21	106.82	20.31	48.17	18.22
12	E1a_E3a	KnownJunction	0	259.09	238.15	225.43	170.67	25.70	80.32	33.65
13	E1a_E5a	NovelJunction	1	10.13	11.66	5.07	1.16	2.01	2.89	0.63
14	I1_SR2	SilentIntronRegion	1	47.46	6.13	40.95	4.63	0.58	2.69	0.18
15	ER2a	ExonRegion	0	7.41	3.44	18.21	4.22	0.01	0.69	0.38
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	I2_AR2	ActiveIntronRegion	1	27.53	4.10	40.55	5.97	0.33	3.44	0.15
18	I2_SR2	SilentIntronRegion	1	31.95	3.83	37.75	4.44	0.14	3.85	0.27
19	I2_AR3	ActiveIntronRegion	1	35.73	3.64	46.17	6.86	0.00	5.72	0.00
20	I2_AR4	ActiveIntronRegion	1	32.73	2.83	51.20	5.57	0.54	5.45	0.07
21	I2_SR3	SilentIntronRegion	1	46.22	4.10	44.14	5.46	0.72	3.02	0.33
22	I2_SR4	SilentIntronRegion	1	45.25	5.57	36.84	9.09	1.24	8.27	0.55
23	I2_AR6	ActiveIntronRegion	1	75.01	4.34	51.00	11.98	1.13	5.20	0.74
24	I2_AR7	ActiveIntronRegion	1	160.22	19.37	94.72	25.84	2.20	20.84	2.02
25	I2_SR5	SilentIntronRegion	1	178.80	20.37	92.56	26.19	3.03	20.81	1.81
26	I2_AR8	ActiveIntronRegion	1	61.27	10.49	41.28	13.63	1.79	9.38	0.22
27	I2_SR6	SilentIntronRegion	1	52.56	5.76	38.25	9.29	1.88	9.30	0.42
28	I2_AR9	ActiveIntronRegion	1	94.65	11.63	56.94	21.78	2.39	16.98	0.07
29	I2_AR12	ActiveIntronRegion	1	40.90	6.24	47.18	11.48	0.52	5.22	1.07
30	I2_AR13	ActiveIntronRegion	1	37.12	3.87	37.62	10.27	0.47	7.07	1.83
31	I2_AR14	ActiveIntronRegion	1	41.61	5.12	49.00	12.25	1.09	8.14	0.83
32	I2_AR18	ActiveIntronRegion	1	31.23	7.19	37.61	19.29	1.26	11.83	0.31
33	I2_SR12	SilentIntronRegion	0	25.38	5.79	28.18	17.21	1.31	13.56	0.54
34	ER3a	ExonRegion	0	398.59	286.78	312.85	207.19	43.07	96.38	53.74
35	E3a_E4a	KnownJunction	1	539.10	247.71	362.78	197.39	61.04	99.59	53.76
36	ER4a	ExonRegion	1	549.89	249.59	372.15	190.56	68.76	94.30	52.16
37	E4a_E5a	KnownJunction	1	547.03	235.02	338.75	185.66	67.41	78.23	48.63
38	ER5a	ExonRegion	1	590.49	267.20	386.00	200.26	68.67	105.45	55.21
39	E5_Da	NovelBoundary	1	69.26	1.63	45.67	5.17	0.00	2.79	0.00
40	E5a_E6a	KnownJunction	1	591.98	268.13	405.66	185.30	66.39	120.41	56.31
41	E5a_E7a	NovelJunction	1	6.38	39.88	4.74	10.05	1.04	10.43	0.89
42	I5	Intron	1	38.35	4.58	37.17	5.78	0.72	2.31	0.43
43	I5_AR1	ActiveIntronRegion	1	50.37	6.53	50.23	5.88	1.00	2.68	0.27
44	I5_SR2	SilentIntronRegion	1	49.16	3.74	34.16	4.00	0.36	1.92	0.27
45	ER6a	ExonRegion	1	910.63	361.18	569.90	253.95	103.65	126.37	66.88
46	E6a_E7a	KnownJunction	1	901.21	349.88	524.56	261.75	98.04	122.47	69.87
47	ER7a	ExonRegion	1	656.32	300.04	445.01	215.24	85.98	102.18	67.75
48	E7_Da	NovelBoundary	0	364.88	144.91	255.85	102.92	43.87	65.61	31.30
49	E7b_E8a	KnownJunction	1	488.60	239.99	316.72	174.63	95.23	111.27	54.32
50	ER7b	ExonRegion	1	533.83	254.19	364.33	181.29	90.58	105.15	59.52
51	ER8a	ExonRegion	0	460.78	316.29	367.09	210.68	101.11	120.82	70.83
52	E8a_E9a	KnownJunction	0	384.45	306.67	364.23	218.44	77.13	118.37	87.28
53	ER9a	ExonRegion	0	438.42	356.77	398.92	275.38	90.95	147.37	96.11
54	E9a_E10a	KnownJunction	0	464.40	376.78	390.64	258.23	103.65	149.60	72.59
55	I9_SR3	SilentIntronRegion	1	18.72	0.32	20.49	4.17	0.00	12.46	0.00
56	ER10a	ExonRegion	0	473.65	392.96	416.15	296.36	94.99	158.41	89.60
57	E10a_E11a	KnownJunction	0	478.18	450.58	425.56	317.32	94.89	164.66	101.54
58	I10	Intron	1	65.51	7.52	44.66	7.12	0.70	3.95	0.43
59	I10_SR1	SilentIntronRegion	1	65.55	7.52	44.68	7.12	0.70	3.95	0.43
60	E11_Aa	NovelBoundary	1	100.59	23.12	56.98	10.65	0.00	11.98	0.00
61	ER11a	ExonRegion	0	438.31	369.16	374.56	268.64	77.06	162.90	86.99
62	E11a_E12a	KnownJunction	0	294.94	247.08	286.44	199.36	77.62	105.62	60.26
63	I11_SR1	SilentIntronRegion	1	48.27	4.46	31.69	4.52	0.78	2.30	0.32
64	I11_SR2	SilentIntronRegion	1	43.90	4.18	26.63	4.66	0.76	2.34	0.16
65	ER12a	ExonRegion	0	250.27	245.00	255.24	198.30	74.80	87.34	60.52
66	E12a_E13a	KnownJunction	0	188.55	166.35	169.79	161.63	77.11	64.11	51.01
67	I12_SR1	SilentIntronRegion	1	46.83	11.30	36.32	9.78	1.70	4.15	1.11
68	I12_AR1	ActiveIntronRegion	1	75.21	12.61	42.22	12.86	4.75	4.95	0.50
69	I12_SR2	SilentIntronRegion	1	47.57	12.71	35.43	13.13	2.98	5.50	1.24
70	I12_AR2	ActiveIntronRegion	1	53.04	8.63	32.82	7.63	2.01	1.42	0.65
71	I12_AR3	ActiveIntronRegion	1	51.42	14.21	49.54	12.39	2.71	7.40	0.43
72	I12_AR4	ActiveIntronRegion	1	69.69	16.41	47.29	12.77	5.19	8.81	0.75
73	I12_AR6	ActiveIntronRegion	1	67.98	18.74	43.21	12.17	4.75	4.36	1.43
74	I12_SR5	SilentIntronRegion	1	53.04	15.12	27.11	9.77	3.90	3.90	1.27
75	I12_AR7	ActiveIntronRegion	1	76.30	11.42	46.67	14.93	4.06	9.23	1.33
76	I12_SR6	SilentIntronRegion	1	58.61	12.92	34.96	11.74	2.91	4.13	1.54
77	I12_SR7	SilentIntronRegion	1	48.78	6.94	25.36	5.52	1.75	2.30	1.14
78	I12_AR14	ActiveIntronRegion	1	53.19	8.15	22.94	2.80	2.28	2.76	1.75
79	ER13a	ExonRegion	0	220.19	207.58	218.19	200.63	68.25	97.68	69.92
80	E13a_E14a	KnownJunction	0	176.23	178.72	196.20	168.37	54.45	107.20	64.36
81	E13a_E15a	NovelJunction	1	1.52	0.00	10.26	9.45	3.34	2.71	0.00
82	ER14a	ExonRegion	0	181.69	180.33	227.04	179.00	62.68	88.85	70.60
83	E14a_E15a	KnownJunction	0	143.85	152.58	209.74	144.83	58.97	56.68	64.08
84	E15_Aa	NovelBoundary	0	37.59	21.25	20.55	23.08	3.00	23.32	1.96
85	ER15a	ExonRegion	0	189.23	202.90	243.72	189.75	60.27	78.68	68.38
86	E15a_E16a	KnownJunction	0	240.00	225.15	280.72	226.78	56.87	115.67	63.56
87	E15a_E19a	NovelJunction	0	3.49	9.35	2.24	2.82	0.00	0.99	0.00
88	I15_AR3	ActiveIntronRegion	1	69.66	8.92	29.81	8.51	1.92	4.56	2.37
89	ER16a	ExonRegion	0	367.94	248.08	367.16	243.58	83.28	137.42	76.87
90	E16a_E17a	KnownJunction	0	425.51	247.74	404.73	233.23	79.92	147.05	91.09
91	ER17a	ExonRegion	0	365.28	253.37	392.56	243.62	74.64	151.03	76.83
92	E17a_E18a	KnownJunction	0	277.40	242.38	344.99	237.78	73.75	142.74	64.20
93	ER18a	ExonRegion	0	368.94	213.13	383.30	206.30	89.69	114.86	80.77
94	E18a_E19a	KnownJunction	0	353.99	161.94	321.36	178.31	112.84	85.46	88.78
95	I18_SR2	SilentIntronRegion	0	46.83	4.60	22.22	2.30	1.30	0.85	1.71
96	I18_AR6	ActiveIntronRegion	0	50.51	4.89	26.96	4.30	0.87	2.97	2.18
97	ER19a	ExonRegion	0	403.37	205.77	356.75	207.92	79.13	99.66	95.48
98	E19a_E20a	KnownJunction	0	512.50	201.76	380.17	210.25	105.12	96.13	114.04
99	ER20a	ExonRegion	0	439.27	210.58	356.72	250.57	118.27	132.40	139.61
100	E20a_E21a	KnownJunction	0	340.37	197.35	232.38	194.13	85.39	109.18	106.64
101	ER21a	ExonRegion	0	354.12	178.27	274.72	210.55	90.16	114.12	137.19
102	E21a_E22a	KnownJunction	0	236.73	119.27	181.80	131.50	83.52	61.05	86.22
103	E21a_E23a	NovelJunction	1	2.44	16.60	3.36	7.45	2.88	2.71	0.00
104	I21_AR3	ActiveIntronRegion	0	51.21	4.28	25.80	9.29	5.18	2.74	2.87
105	ER22a	ExonRegion	1	248.00	101.06	180.45	125.53	75.34	68.32	104.56
106	E22_Da	KnownBoundary	1	104.66	31.58	77.34	77.26	9.82	41.24	10.33
107	E22a_E23a	KnownJunction	1	66.78	43.14	43.47	26.98	28.31	9.62	55.05
108	ER22b	ExonRegion	1	110.29	56.14	91.11	79.90	21.36	42.53	11.28
109	E22_Db	NovelBoundary	1	64.04	12.30	32.12	5.34	10.10	4.66	3.84
110	E22b_E23a	KnownJunction	1	64.04	41.27	69.06	73.12	19.13	44.54	7.21
111	I22	Intron	0	49.46	12.31	34.64	6.63	7.26	4.17	5.00
112	I22_AR1	ActiveIntronRegion	0	52.72	13.35	33.73	8.36	6.13	3.92	6.54
113	I22_AR2	ActiveIntronRegion	0	57.87	9.95	41.15	2.88	11.49	3.29	5.48
114	I22_SR1	SilentIntronRegion	0	63.90	13.81	44.33	9.10	9.04	5.58	5.96
115	I22_AR3	ActiveIntronRegion	0	70.33	9.10	51.36	7.33	10.17	6.30	4.29
116	I22_AR4	ActiveIntronRegion	0	83.28	14.93	56.09	7.85	9.61	4.22	6.47
117	I22_SR3	SilentIntronRegion	0	48.09	15.01	31.85	5.57	7.24	3.96	4.84
118	ER23a	ExonRegion	0	174.80	113.80	165.98	139.85	73.56	64.01	70.54
119	E23a_E24a	KnownJunction	0	151.19	104.19	136.75	151.63	56.30	67.83	57.23
120	ER24a	ExonRegion	0	169.25	59.83	145.68	90.49	50.90	46.66	38.25
121	ER24b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00