Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC116366.4	Gene	0	79.31	51.52	31.93	62.21	1.22	111.66	0.94
2	378953	Transcript	0	68.59	66.06	38.34	55.73	0.80	143.12	1.11
3	337752	Transcript	0	18.99	11.58	6.11	13.41	0.75	26.08	0.34
4	378947	Transcript	0	5.07	9.55	0.80	7.31	0.15	14.62	0.50
5	407797	Transcript	0	98.33	54.94	36.08	81.05	0.42	118.07	0.53
6	ER1a	ExonRegion	0	1.77	6.75	0.15	3.99	0.24	13.76	0.48
7	E1_Ab	KnownBoundary	0	11.53	31.81	2.31	22.54	0.00	81.18	1.32
8	E1_Ac	KnownBoundary	0	5.41	32.79	0.73	13.79	0.00	39.40	0.80
9	ER1b	ExonRegion	1	13.26	46.77	2.03	28.21	0.00	107.12	2.70
10	ER1c	ExonRegion	1	9.21	39.83	1.12	18.44	0.00	83.04	1.27
11	E1a_E2a	KnownJunction	1	5.31	36.04	0.55	11.59	0.00	52.98	0.79
12	ER2a	ExonRegion	1	7.81	58.91	1.75	31.16	3.39	131.55	1.14
13	E2a_E3a	KnownJunction	1	10.93	81.99	8.05	31.32	3.18	160.48	2.55
14	E2a_E7a	NovelJunction	1	0.00	6.44	0.00	0.00	0.00	25.38	0.67
15	I2	Intron	1	6.77	4.38	2.06	17.50	0.07	33.80	0.21
16	I2_SR1	SilentIntronRegion	1	17.89	3.64	1.94	9.80	0.00	7.36	0.00
17	I2_AR7	ActiveIntronRegion	1	12.45	3.20	3.32	42.61	0.00	91.36	0.28
18	I2_SR7	SilentIntronRegion	1	4.39	3.73	2.23	37.17	0.00	66.18	0.35
19	I2_AR8	ActiveIntronRegion	1	13.31	11.27	5.54	49.29	0.13	92.62	0.42
20	I2_SR8	SilentIntronRegion	1	11.32	6.41	4.42	41.39	0.13	94.16	0.29
21	I2_SR10	SilentIntronRegion	1	4.51	3.54	1.24	13.11	0.10	20.43	0.10
22	I2_AR12	ActiveIntronRegion	1	5.84	4.59	5.13	37.63	0.00	76.02	0.00
23	E3_Aa	NovelBoundary	1	4.76	10.64	5.52	74.26	0.00	172.59	0.70
24	ER3a	ExonRegion	1	9.01	71.52	7.71	38.56	1.38	155.58	2.23
25	E3_Da	NovelBoundary	0	12.45	13.32	2.39	10.38	0.99	36.53	0.00
26	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	1.60	0.00	1.21	0.00
27	E3a_E5a	KnownJunction	0	0.00	2.86	0.00	0.00	0.00	1.31	0.00
28	E3a_E6a	KnownJunction	0	1.84	4.15	0.00	3.36	0.00	11.74	0.00
29	E3a_E7a	KnownJunction	0	5.99	41.88	2.41	28.26	0.00	99.16	0.89
30	I3	Intron	0	12.87	12.21	3.35	13.35	0.34	20.42	0.42
31	I3_AR1	ActiveIntronRegion	0	8.23	17.14	2.08	17.12	0.14	30.18	0.81
32	I3_AR2	ActiveIntronRegion	0	11.85	16.01	3.59	15.09	0.40	28.52	0.61
33	I3_SR2	SilentIntronRegion	0	18.04	12.84	4.53	13.46	0.44	16.60	0.20
34	E4_Aa	NovelBoundary	0	7.24	21.41	4.33	13.63	0.00	19.43	0.89
35	ER4a	ExonRegion	0	10.13	19.10	1.59	13.02	0.30	28.04	1.00
36	E4_Da	NovelBoundary	0	12.37	38.04	1.25	15.01	0.00	40.17	1.76
37	I4	Intron	0	10.41	13.68	4.04	15.35	0.10	23.52	0.72
38	I4_AR1	ActiveIntronRegion	0	10.04	15.87	2.83	10.39	0.15	18.38	0.55
39	I4_SR1	SilentIntronRegion	0	10.56	12.83	4.51	17.29	0.09	25.55	0.79
40	E5_Aa	NovelBoundary	0	25.14	11.56	6.28	20.26	1.18	21.82	0.69
41	ER5a	ExonRegion	0	37.99	20.30	12.21	26.82	1.50	50.85	0.68
42	E5_Da	NovelBoundary	0	36.13	18.81	18.83	35.19	0.00	66.09	0.00
43	I5	Intron	0	37.84	34.86	16.74	48.75	0.48	79.57	0.73
44	I5_SR1	SilentIntronRegion	0	15.35	20.50	8.08	40.72	0.69	63.22	1.26
45	I5_AR1	ActiveIntronRegion	0	8.66	19.95	3.84	24.18	0.26	54.57	0.99
46	I5_AR2	ActiveIntronRegion	0	15.85	24.48	8.98	31.52	0.00	50.42	0.37
47	I5_AR3	ActiveIntronRegion	0	9.81	28.30	5.54	29.91	0.93	44.54	0.15
48	I5_AR4	ActiveIntronRegion	0	29.20	20.79	12.97	33.48	0.32	42.48	0.19
49	I5_AR5	ActiveIntronRegion	0	29.52	32.81	10.66	49.17	0.13	80.07	1.00
50	I5_SR2	SilentIntronRegion	0	35.71	31.31	11.50	50.58	0.27	85.90	1.11
51	I5_AR6	ActiveIntronRegion	0	35.63	36.44	19.73	60.93	0.42	108.92	0.17
52	I5_SR3	SilentIntronRegion	0	45.58	45.12	21.22	56.36	0.59	91.50	0.58
53	I5_AR7	ActiveIntronRegion	0	95.66	40.76	37.25	49.52	0.67	88.19	1.45
54	I5_SR4	SilentIntronRegion	0	19.26	7.13	4.65	10.89	0.00	23.21	0.00
55	I5	Intron	0	71.03	38.83	23.62	55.17	0.45	120.60	0.11
56	I5_SR1	SilentIntronRegion	0	75.21	41.11	25.01	58.41	0.48	127.69	0.11
57	E6_Aa	NovelBoundary	0	228.64	73.64	88.95	143.96	0.00	219.62	0.77
58	ER6a	ExonRegion	0	194.83	105.72	72.16	158.75	0.85	224.40	1.06
59	E6_Da	NovelBoundary	0	257.06	168.11	120.24	197.58	2.17	222.55	1.63
60	I6	Intron	0	128.33	90.51	62.72	112.28	0.56	162.63	0.78
61	I6_AR1	ActiveIntronRegion	0	189.58	104.21	87.51	163.56	0.39	193.20	1.25
62	I6_SR1	SilentIntronRegion	0	76.13	71.27	40.25	83.82	1.09	131.06	0.49
63	I6_AR2	ActiveIntronRegion	0	98.64	87.88	55.92	94.88	0.47	164.40	0.73
64	I6_SR2	SilentIntronRegion	0	120.74	51.75	56.51	51.52	0.34	98.02	0.40
65	I6_AR3	ActiveIntronRegion	0	159.60	110.61	74.93	126.45	0.17	186.88	0.85
66	E7_Aa	NovelBoundary	0	422.82	91.16	103.80	154.47	2.17	230.83	0.76
67	ER7a	ExonRegion	0	198.00	149.56	112.45	134.95	2.17	316.45	1.97
68	IG14	Intergenic	0	397.72	189.99	216.55	226.14	0.45	298.18	1.11
69	IG14_SR1	SilentIntergenicRegion	0	256.63	133.80	140.92	164.47	0.08	250.44	0.68
70	IG14_AR1	ActiveIntergenicRegion	0	474.99	283.07	273.13	370.37	0.53	439.06	2.39
71	IG14_SR2	SilentIntergenicRegion	0	491.96	231.17	258.70	289.85	0.23	330.59	0.94
72	IG14_AR2	ActiveIntergenicRegion	0	377.81	182.36	276.90	202.56	0.00	315.76	1.35
73	IG14_AR3	ActiveIntergenicRegion	0	384.36	164.83	268.09	199.63	0.00	295.41	1.35
74	IG14_AR4	ActiveIntergenicRegion	0	411.38	173.20	259.94	209.85	0.23	257.78	0.32
75	IG14_SR3	SilentIntergenicRegion	0	498.76	220.39	261.68	254.95	0.77	318.68	1.43
76	IG14_AR5	ActiveIntergenicRegion	0	353.88	223.78	219.51	168.44	2.01	335.39	1.78