Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DMXL1	Gene	0	74.26	37.91	58.55	28.75	85.94	35.07	61.83
2	311085	Transcript	0	80.03	47.85	62.22	34.99	91.37	39.32	67.12
3	IG41_AR2	ActiveIntergenicRegion	0	0.13	9.49	0.61	9.88	4.29	7.12	2.51
4	IG41_SR3	SilentIntergenicRegion	0	3.21	10.27	1.80	10.61	1.39	4.60	0.68
5	ER1a	ExonRegion	0	13.43	34.29	12.23	26.01	12.24	26.89	15.53
6	E1a_E2a	KnownJunction	0	52.07	96.42	36.37	56.13	42.23	50.33	42.62
7	ER2a	ExonRegion	0	90.89	102.90	53.74	69.64	79.15	64.64	53.53
8	E2a_E3a	KnownJunction	0	121.19	138.40	66.42	90.40	95.19	78.47	65.70
9	ER3a	ExonRegion	1	154.11	133.50	89.29	84.65	98.68	96.43	56.37
10	E3a_E4a	KnownJunction	1	166.97	115.12	108.97	51.42	83.73	89.65	58.43
11	E3a_E5a	NovelJunction	0	3.67	6.02	1.25	10.32	1.15	1.31	0.00
12	ER4a	ExonRegion	1	147.92	93.93	85.00	50.64	103.58	65.12	58.68
13	E4a_E5a	KnownJunction	1	107.55	64.60	61.72	39.42	97.05	37.76	44.48
14	ER5a	ExonRegion	0	95.63	78.58	85.67	45.87	84.45	51.23	53.23
15	E5a_E6a	KnownJunction	0	95.43	87.62	89.80	59.46	57.52	68.04	64.32
16	ER6a	ExonRegion	0	92.54	98.97	90.64	55.02	65.72	62.36	56.00
17	E6a_E7a	KnownJunction	1	89.06	108.84	80.19	38.01	67.80	58.96	51.45
18	ER7a	ExonRegion	0	130.22	119.76	98.74	60.77	89.66	81.70	73.38
19	E7a_E8a	KnownJunction	0	109.20	115.83	72.96	66.94	64.27	79.86	58.89
20	ER8a	ExonRegion	0	104.24	124.96	87.07	68.56	109.03	80.27	100.13
21	E8a_E9a	KnownJunction	0	85.00	160.57	76.92	82.09	97.65	76.67	105.41
22	ER9a	ExonRegion	0	63.20	140.40	65.77	57.46	82.23	81.07	95.29
23	E9a_E10a	KnownJunction	0	44.28	66.73	52.42	27.23	49.86	39.21	71.14
24	ER10a	ExonRegion	0	74.87	46.52	56.95	26.16	75.53	28.30	52.18
25	E10a_E11a	KnownJunction	1	131.07	46.92	67.15	34.81	86.17	22.86	53.21
26	ER11a	ExonRegion	0	146.31	62.02	81.67	39.34	109.94	44.20	66.97
27	E11a_E12a	KnownJunction	0	108.28	52.02	74.77	21.75	101.16	41.24	58.63
28	ER12a	ExonRegion	0	88.11	39.87	65.08	31.21	71.95	28.98	53.75
29	E12_Da	NovelBoundary	0	4.11	10.25	3.91	10.02	12.89	3.62	8.31
30	E12a_E13a	KnownJunction	0	53.51	32.71	45.21	20.67	29.18	34.87	35.56
31	E13_Aa	NovelBoundary	0	2.94	7.43	1.48	12.16	12.98	4.96	7.34
32	ER13a	ExonRegion	0	58.51	30.68	51.08	26.84	43.04	33.05	41.74
33	E13_Da	NovelBoundary	1	2.72	12.82	5.10	1.27	10.88	7.08	2.16
34	E13a_E14a	KnownJunction	0	68.81	26.80	59.32	19.34	28.47	30.34	42.39
35	ER14a	ExonRegion	0	77.23	13.65	52.47	20.13	48.96	21.26	37.13
36	E14a_E15a	KnownJunction	1	77.31	3.28	51.35	14.98	51.41	26.67	38.34
37	ER15a	ExonRegion	0	85.81	14.46	65.50	30.13	53.72	20.78	45.41
38	E15a_E16a	KnownJunction	1	105.88	20.81	79.38	54.99	45.78	23.66	48.23
39	ER16a	ExonRegion	1	75.82	25.25	69.78	39.41	45.18	16.99	44.59
40	E16a_E17a	KnownJunction	1	80.25	24.17	59.77	34.62	36.38	13.27	43.54
41	ER17a	ExonRegion	0	72.25	27.06	60.76	25.43	49.11	11.48	44.76
42	E17a_E18a	KnownJunction	0	67.49	26.69	53.72	15.14	52.15	22.16	44.18
43	ER18a	ExonRegion	0	51.79	23.13	50.83	20.23	56.41	21.92	47.64
44	E18a_E19a	KnownJunction	0	52.44	14.37	43.20	24.52	72.94	24.39	56.71
45	ER19a	ExonRegion	0	59.38	21.37	36.18	20.09	63.99	21.50	50.51
46	E19a_E20a	KnownJunction	0	62.84	19.94	32.95	16.04	48.48	15.12	32.79
47	ER20a	ExonRegion	0	99.78	27.47	48.25	18.26	80.54	16.36	45.32
48	E20a_E21a	KnownJunction	1	131.73	22.59	63.83	21.19	84.30	16.40	38.85
49	ER21a	ExonRegion	1	108.89	19.26	66.90	17.89	88.79	12.52	46.57
50	E21a_E22a	KnownJunction	0	85.25	21.17	54.45	20.81	92.10	5.87	37.66
51	E22_Aa	NovelBoundary	1	38.57	2.84	22.98	1.57	0.88	0.00	0.79
52	ER22a	ExonRegion	0	97.75	24.95	66.67	22.05	80.88	14.82	49.49
53	E22a_E23a	KnownJunction	0	71.32	22.44	53.03	15.41	63.40	11.23	42.05
54	ER23a	ExonRegion	0	60.88	23.56	58.16	19.78	58.26	21.57	46.26
55	E23a_E24a	KnownJunction	0	42.58	19.28	42.54	16.93	53.28	15.87	48.04
56	ER24a	ExonRegion	0	88.37	27.27	68.27	21.89	85.19	25.95	68.69
57	E24a_E25a	KnownJunction	0	148.11	49.13	95.48	31.43	123.10	33.47	99.69
58	ER25a	ExonRegion	0	110.36	51.73	76.15	39.19	146.02	41.83	120.60
59	E25a_E26a	KnownJunction	0	115.24	44.71	70.33	38.01	136.40	45.13	98.04
60	ER26a	ExonRegion	0	74.45	47.22	59.81	40.79	107.09	46.32	100.18
61	E26a_E27a	KnownJunction	0	49.34	44.71	45.32	31.86	89.61	34.41	89.96
62	ER27a	ExonRegion	0	59.67	45.69	60.40	42.46	117.01	39.63	111.79
63	E27a_E28a	KnownJunction	0	52.49	29.00	64.55	31.15	96.50	40.04	77.39
64	ER28a	ExonRegion	0	57.45	43.70	56.70	44.05	89.15	33.71	79.38
65	E28a_E29a	KnownJunction	0	66.78	32.52	56.17	34.65	82.87	29.96	70.85
66	ER29a	ExonRegion	0	42.86	32.05	46.44	32.65	77.30	33.83	62.98
67	E29a_E30a	KnownJunction	0	53.06	37.62	65.83	35.19	93.36	30.47	80.94
68	ER30a	ExonRegion	0	55.30	47.99	51.25	39.35	96.83	39.80	58.53
69	E30a_E31a	KnownJunction	0	78.53	43.09	88.41	30.59	148.14	43.23	92.55
70	ER31a	ExonRegion	0	109.72	48.81	84.48	39.67	134.55	38.90	100.86
71	E31a_E32a	KnownJunction	0	112.34	36.78	91.88	30.69	132.21	38.11	93.35
72	ER32a	ExonRegion	0	92.92	39.75	74.73	24.78	109.62	43.29	80.45
73	E32a_E33a	KnownJunction	1	74.97	32.42	62.87	16.31	104.34	42.69	50.52
74	ER33a	ExonRegion	0	70.40	26.06	55.73	20.13	99.84	39.87	61.40
75	E33a_E34a	KnownJunction	1	62.77	20.36	61.02	31.70	80.92	49.28	70.27
76	I33_AR1	ActiveIntronRegion	0	2.46	3.66	0.51	0.00	17.60	0.00	0.00
77	ER34a	ExonRegion	0	69.93	27.80	67.93	27.32	118.97	43.23	70.79
78	E34a_E35a	KnownJunction	0	67.84	25.64	62.01	29.07	116.79	40.55	70.70
79	ER35a	ExonRegion	0	64.82	31.21	63.10	34.50	134.57	47.61	77.85
80	E35a_E36a	KnownJunction	0	60.72	38.70	52.87	37.68	170.71	47.54	81.93
81	ER36a	ExonRegion	0	53.74	42.96	59.21	33.07	130.08	53.61	85.29
82	E36a_E37a	KnownJunction	0	48.88	44.85	58.49	25.63	112.80	39.90	73.06
83	ER37a	ExonRegion	0	67.38	37.80	58.43	31.15	118.25	42.65	86.68
84	E37a_E38a	KnownJunction	0	69.23	34.34	56.98	32.46	109.89	41.73	98.41
85	ER38a	ExonRegion	0	64.71	37.67	58.37	31.12	147.31	38.89	101.28
86	E38a_E39a	KnownJunction	0	77.31	47.03	61.94	29.80	170.71	20.88	97.68
87	E39_Aa	NovelBoundary	1	34.03	1.10	21.63	0.00	1.18	0.00	0.00
88	ER39a	ExonRegion	0	75.73	30.93	55.90	35.52	156.09	27.55	120.94
89	E39a_E40a	KnownJunction	0	46.97	24.85	41.96	32.27	124.37	30.12	105.72
90	E39a_E41a	NovelJunction	0	6.89	14.87	8.42	16.80	2.31	26.61	0.00
91	E40_Aa	NovelBoundary	0	7.99	8.49	7.04	4.25	3.18	13.35	0.82
92	ER40a	ExonRegion	0	62.01	30.16	39.67	28.56	131.26	29.22	99.44
93	E40a_E41a	KnownJunction	0	55.18	33.68	37.51	33.54	154.52	37.55	95.56
94	ER41a	ExonRegion	0	44.66	34.98	40.03	35.95	134.13	50.89	82.26
95	E41a_E42a	KnownJunction	0	40.74	31.47	46.50	40.66	95.90	40.60	75.54
96	ER42a	ExonRegion	0	64.80	38.10	58.86	39.33	125.84	50.78	77.90
97	E42a_E43a	KnownJunction	0	66.44	38.09	59.87	23.70	111.83	43.84	61.90
98	ER43a	ExonRegion	0	67.35	22.76	48.61	18.66	101.09	38.90	56.75
99	IG42_AR2	ActiveIntergenicRegion	0	19.71	15.87	5.83	1.32	14.38	6.85	6.59