Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ARTS-1	Gene	0	74.72	82.52	85.28	95.04	42.20	149.17	41.71
2	296754	Transcript	0	113.60	115.29	129.96	133.30	76.15	174.70	65.07
3	ER1a	ExonRegion	0	4.81	9.16	3.60	18.49	4.58	14.41	4.07
4	E1a_E2a	KnownJunction	0	74.52	68.38	47.71	123.54	40.78	99.72	27.43
5	I1_AR4	ActiveIntronRegion	0	4.20	24.91	2.85	11.46	0.95	12.70	0.50
6	I1_SR4	SilentIntronRegion	0	5.56	21.63	4.93	14.52	0.45	19.84	2.97
7	E2_Aa	NovelBoundary	0	10.93	27.98	4.89	22.21	0.00	29.85	3.88
8	ER2a	ExonRegion	0	113.09	174.05	126.25	205.16	73.16	292.13	76.99
9	E2a_E3a	KnownJunction	0	89.29	133.22	119.62	166.18	92.74	211.07	60.75
10	ER3a	ExonRegion	0	85.52	145.11	111.36	168.82	65.41	192.14	62.00
11	E3_Da	NovelBoundary	1	29.84	17.26	53.86	6.31	0.00	11.10	2.34
12	E3a_E4a	KnownJunction	0	89.11	121.87	133.11	161.30	111.83	179.10	67.92
13	ER4a	ExonRegion	0	105.74	149.91	130.06	162.23	76.07	193.93	71.99
14	E4a_E5a	KnownJunction	0	80.15	118.35	106.93	139.33	70.77	161.04	61.28
15	I4	Intron	0	5.87	16.72	2.20	6.71	0.09	12.90	1.97
16	I4_SR1	SilentIntronRegion	0	5.88	16.75	2.20	6.73	0.09	12.92	1.98
17	ER5a	ExonRegion	0	108.72	119.20	139.37	139.79	82.44	151.25	72.35
18	E5_Da	NovelBoundary	1	3.54	32.68	7.79	12.54	1.98	3.94	3.64
19	E5a_E6a	KnownJunction	0	79.71	106.40	104.40	94.01	64.57	123.87	61.91
20	E6_Aa	NovelBoundary	1	42.14	17.13	53.59	13.22	0.88	13.43	0.86
21	ER6a	ExonRegion	0	92.71	113.73	123.43	110.01	73.96	116.22	69.66
22	E6a_E7a	KnownJunction	0	82.28	111.68	110.18	103.84	57.82	127.11	64.49
23	E7_Aa	NovelBoundary	0	5.94	22.30	10.26	8.59	0.00	6.35	2.88
24	ER7a	ExonRegion	0	117.67	149.66	140.28	147.08	71.67	173.96	84.90
25	E7a_E8a	KnownJunction	0	105.21	129.05	154.24	160.54	71.88	169.88	90.76
26	ER8a	ExonRegion	0	127.87	130.72	144.42	140.67	97.38	180.57	85.23
27	E8a_E9a	KnownJunction	0	148.51	97.10	154.38	141.90	98.09	158.87	58.92
28	ER9a	ExonRegion	0	166.66	143.18	180.16	171.90	83.72	220.60	70.98
29	E9a_E10a	KnownJunction	0	183.17	142.68	172.70	173.79	93.96	207.30	62.21
30	ER10a	ExonRegion	0	150.39	127.66	153.60	172.84	88.27	210.19	58.52
31	E10a_E11a	KnownJunction	0	125.46	109.39	131.88	146.45	78.45	192.69	52.80
32	E10a_E12a	NovelJunction	0	3.22	8.49	9.04	13.55	2.12	14.71	0.87
33	I10_AR1	ActiveIntronRegion	0	5.03	19.41	6.51	7.61	0.35	9.66	5.01
34	E11_Aa	NovelBoundary	1	1.45	23.12	0.00	14.17	1.04	4.53	6.22
35	ER11a	ExonRegion	0	119.37	118.96	121.10	134.70	84.94	171.64	72.62
36	E11a_E12a	KnownJunction	0	99.41	116.67	119.89	131.83	55.51	186.42	85.70
37	E12_Aa	NovelBoundary	0	3.67	23.88	4.34	11.43	1.08	11.23	5.23
38	ER12a	ExonRegion	0	103.89	137.67	121.19	152.47	62.40	187.10	87.52
39	E12_Da	NovelBoundary	0	12.75	25.22	9.99	21.29	1.91	17.69	5.88
40	E12a_E13a	KnownJunction	0	105.91	141.26	115.64	133.29	73.86	141.80	63.17
41	I12	Intron	1	13.69	30.65	5.82	14.25	0.66	15.68	6.68
42	I12_SR1	SilentIntronRegion	0	14.17	31.89	6.07	14.99	0.69	16.35	6.99
43	E13_Aa	NovelBoundary	1	11.53	39.80	4.04	6.31	0.00	12.03	5.13
44	ER13a	ExonRegion	0	102.24	134.26	134.33	151.44	95.48	191.92	97.92
45	E13_Da	NovelBoundary	1	35.83	73.43	31.36	44.86	4.84	27.52	17.13
46	E13a_E14a	KnownJunction	0	95.18	77.42	137.94	98.10	66.18	188.19	96.57
47	I13	Intron	0	18.31	42.67	19.14	24.98	4.19	23.03	7.06
48	I13_AR1	ActiveIntronRegion	0	29.82	52.86	26.59	46.06	5.67	30.66	10.33
49	I13_SR1	SilentIntronRegion	1	33.38	72.08	50.13	51.54	12.24	29.42	14.77
50	I13_AR2	ActiveIntronRegion	0	16.45	39.95	17.42	23.29	3.85	22.20	6.54
51	I13_SR2	SilentIntronRegion	0	19.36	45.93	20.58	23.10	4.45	23.12	7.31
52	E14_Aa	NovelBoundary	1	64.72	32.52	72.94	21.81	2.93	42.72	5.53
53	ER14a	ExonRegion	0	112.21	134.58	141.59	160.18	85.74	224.52	91.38
54	E14a_E15a	KnownJunction	0	91.96	132.38	147.97	165.66	112.64	242.32	104.40
55	I14	Intron	1	14.28	28.95	13.24	11.77	1.86	11.13	5.41
56	I14_SR1	SilentIntronRegion	1	14.28	27.52	12.89	9.35	2.00	9.79	5.52
57	I14_AR1	ActiveIntronRegion	1	14.43	32.86	14.28	17.99	1.52	14.59	5.19
58	E15_Aa	NovelBoundary	1	17.14	49.65	8.59	33.46	3.18	15.09	6.28
59	ER15a	ExonRegion	0	91.41	138.80	106.31	141.90	71.56	157.95	67.68
60	E15_Da	NovelBoundary	1	17.69	71.88	10.00	25.76	2.01	17.07	12.27
61	E15a_E16a	KnownJunction	0	71.37	102.27	107.50	107.31	56.43	150.61	63.34
62	I15	Intron	1	12.07	36.84	7.96	10.22	1.53	15.31	12.51
63	I15_AR1	ActiveIntronRegion	1	15.87	42.55	8.40	12.69	2.67	19.28	15.23
64	I15_AR2	ActiveIntronRegion	1	13.77	55.79	16.00	14.10	2.06	34.80	28.59
65	I15_SR1	SilentIntronRegion	1	10.88	40.83	8.84	10.28	1.20	15.83	13.48
66	E16_Aa	NovelBoundary	0	10.63	22.38	3.08	13.03	2.97	18.25	4.20
67	ER16a	ExonRegion	0	108.56	110.87	111.69	110.46	62.49	146.28	49.57
68	E16_Da	NovelBoundary	0	14.85	32.97	3.75	15.90	3.20	20.50	7.62
69	E16a_E17a	KnownJunction	0	141.31	65.02	123.86	91.41	81.05	136.22	45.04
70	I16	Intron	1	10.49	23.76	7.87	6.09	1.03	11.01	6.38
71	I16_AR1	ActiveIntronRegion	1	15.39	31.92	8.80	9.89	1.44	11.80	8.30
72	E17_Aa	NovelBoundary	1	18.31	31.11	9.20	10.32	1.94	13.48	5.23
73	ER17a	ExonRegion	0	184.15	142.80	176.41	141.00	78.34	242.36	58.73
74	E17_Da	NovelBoundary	1	22.61	42.38	5.91	16.90	1.13	22.62	5.40
75	E17a_E18a	KnownJunction	1	255.54	153.45	222.32	154.47	104.48	249.80	66.44
76	I17	Intron	1	12.48	36.08	4.17	14.39	1.61	11.45	4.21
77	I17_SR1	SilentIntronRegion	1	16.01	37.97	2.83	15.08	2.05	16.90	4.29
78	I17_AR1	ActiveIntronRegion	1	10.22	35.06	5.09	14.04	1.34	7.90	4.18
79	ER18a	ExonRegion	0	231.16	140.66	235.92	151.05	129.89	238.88	74.74
80	E18_Da	NovelBoundary	0	68.81	41.35	90.60	53.13	36.45	75.41	27.22
81	E18a_E19a	KnownJunction	0	176.43	96.31	215.87	119.42	147.12	165.81	62.90
82	I18	Intron	1	15.88	29.24	10.66	9.33	2.50	13.18	9.42
83	I18_AR1	ActiveIntronRegion	1	8.42	36.74	5.75	10.76	0.54	30.21	5.97
84	I18_SR1	SilentIntronRegion	1	12.54	63.66	6.48	19.67	2.58	32.97	8.42
85	I18_SR2	SilentIntronRegion	1	17.51	18.55	10.12	6.19	1.76	3.77	5.46
86	I18_AR4	ActiveIntronRegion	1	18.48	28.00	16.26	9.05	4.70	13.15	18.84
87	E19_Aa	NovelBoundary	0	21.43	27.03	24.33	16.20	7.61	13.16	26.07
88	ER19a	ExonRegion	0	172.15	108.85	188.54	119.96	99.46	188.33	70.36
89	E19_Da	NovelBoundary	0	172.72	113.81	209.76	78.46	134.28	90.13	105.52
90	E19a_E20a	KnownJunction	1	8.88	17.84	18.55	51.47	2.19	125.32	5.56
91	I19	Intron	0	139.87	74.30	142.91	68.69	89.77	65.60	69.17
92	I19_AR1	ActiveIntronRegion	0	140.08	74.42	143.12	68.80	89.91	65.70	69.27
93	E20_Aa	NovelBoundary	0	35.38	20.02	28.83	20.48	4.15	17.10	10.06
94	ER20a	ExonRegion	1	28.75	25.65	34.10	34.54	2.64	101.85	8.89