Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CAST	Gene	0	561.65	867.23	501.70	324.52	115.22	376.68	1907.42
2	338252	Transcript	0	3.19	1.49	0.00	0.52	0.00	0.50	4.93
3	325674	Transcript	0	0	0	0	0	0	0	0
4	359176	Transcript	0	0	0	0	0	0	0	0
5	395812	Transcript	0	270.43	941.73	138.44	329.18	15.03	412.98	550.53
6	395813	Transcript	0	0	0	0	0	0	0	0
7	341926	Transcript	0	7.42	7.76	6.30	1.97	0.97	4.57	21.72
8	361634	Transcript	0	5.02	2.92	2.71	3.16	0.11	1.14	7.56
9	309190	Transcript	0	0	0	0	0	0	0	0
10	348386	Transcript	0	1.23	0.83	0.93	0.00	0.00	0.00	0.00
11	283095	Transcript	0	43.71	105.81	37.45	51.50	12.12	41.33	211.04
12	ER1a	ExonRegion	0	2.28	2.98	0.00	1.05	0.00	1.00	5.51
13	E1a_E3a	KnownJunction	0	4.11	0.00	0.00	0.00	0.00	0.00	4.36
14	ER2a	ExonRegion	0	38.13	32.30	12.50	12.00	3.43	15.00	25.84
15	E2a_E3a	KnownJunction	0	136.34	122.24	95.68	40.64	26.76	60.49	128.34
16	ER3a	ExonRegion	0	289.57	216.57	197.04	74.30	50.25	144.61	614.95
17	E3a_E4b	KnownJunction	0	388.78	292.27	254.17	98.72	48.76	182.80	1063.82
18	ER4a	ExonRegion	0	7.42	7.76	6.30	1.97	0.97	4.57	21.72
19	E4_Ab	KnownBoundary	0	0.90	3.10	2.36	0.00	0.00	1.66	2.41
20	ER4b	ExonRegion	0	339.02	341.97	291.09	98.14	57.25	213.48	1198.33
21	E4a_E6a	KnownJunction	1	331.31	364.36	305.46	91.24	62.40	226.11	1104.64
22	ER5a	ExonRegion	0	5.02	2.92	2.71	3.16	0.11	1.14	7.56
23	ER5b	ExonRegion	1	191.36	670.80	90.66	269.39	19.86	246.54	889.73
24	E5a_E6a	KnownJunction	0	191.22	599.57	87.33	243.12	15.15	198.96	666.10
25	ER6a	ExonRegion	0	591.07	1075.33	433.31	312.38	106.86	422.85	1658.46
26	E6a_E7a	KnownJunction	1	40.76	23.80	120.27	9.75	39.97	114.73	123.95
27	E6a_E8a	KnownJunction	0	530.79	1163.51	295.83	343.00	104.06	385.94	1408.16
28	E6a_E11a	NovelJunction	0	14.29	76.92	7.37	55.86	1.18	41.11	12.86
29	ER7a	ExonRegion	1	67.11	31.59	166.12	17.08	41.92	150.09	187.51
30	E7a_E8a	KnownJunction	1	84.40	31.32	189.67	18.23	64.27	152.20	188.53
31	ER8a	ExonRegion	0	913.47	1541.22	755.52	482.34	166.96	724.62	2860.60
32	E8a_E10a	KnownJunction	0	659.77	837.98	588.68	278.44	130.96	445.22	2665.99
33	E8a_E11a	KnownJunction	0	270.43	941.73	138.44	329.18	15.03	412.98	550.53
34	ER9a	ExonRegion	0	2.45	1.66	1.87	0.00	0.00	0.00	0.00
35	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER10a	ExonRegion	0	769.74	1277.71	750.47	368.99	165.01	554.02	3523.42
37	E10a_E11a	KnownJunction	0	727.76	1314.25	646.15	345.57	156.60	454.36	2948.70
38	ER11a	ExonRegion	0	1235.26	2303.59	948.43	659.70	194.03	879.02	3759.00
39	E11a_E12a	KnownJunction	0	1124.89	1789.87	853.08	519.61	244.54	697.06	3362.48
40	E11a_E13a	NovelJunction	1	251.72	221.47	143.78	77.43	0.88	87.74	65.57
41	E11a_E14a	NovelJunction	0	5.94	20.07	8.82	41.18	0.00	20.90	0.00
42	ER12a	ExonRegion	0	1073.62	1647.89	808.05	459.78	208.63	588.74	3190.18
43	E12a_E13a	KnownJunction	0	979.17	1615.48	739.90	396.34	151.00	548.83	2839.03
44	E12a_E14a	NovelJunction	0	2.05	12.30	2.40	22.19	0.00	12.27	3.21
45	ER13a	ExonRegion	0	1174.53	1890.44	987.57	520.58	189.11	643.99	3141.02
46	E13a_E14a	KnownJunction	0	1340.24	1974.77	1051.16	561.46	213.79	630.01	3135.34
47	ER14a	ExonRegion	0	1404.90	1957.83	1078.00	588.42	238.09	695.29	3406.59
48	E14a_E15a	KnownJunction	0	1389.82	1970.83	1183.05	684.86	212.55	693.74	3531.96
49	ER15a	ExonRegion	0	1385.20	2245.03	1162.10	681.01	173.22	752.16	3289.59
50	E15a_E16a	KnownJunction	0	1057.24	1041.16	834.14	296.13	172.20	354.32	2313.31
51	E15a_E17a	KnownJunction	0	0.73	1085.82	1.39	284.21	0.00	384.55	0.64
52	E15a_E18a	NovelJunction	1	0.00	17.60	0.00	47.30	0.00	25.27	0.00
53	ER16a	ExonRegion	0	1089.90	1156.79	970.34	358.52	170.96	363.84	3305.96
54	E16a_E17a	KnownJunction	0	827.72	842.16	810.79	288.09	175.59	253.42	2963.11
55	ER17a	ExonRegion	0	785.23	1734.82	732.25	528.27	160.32	568.72	2660.72
56	E17a_E18a	KnownJunction	0	609.80	1248.68	514.30	404.06	145.14	408.88	1890.21
57	ER18a	ExonRegion	0	543.12	1368.77	572.37	479.58	118.66	497.73	2575.30
58	E18a_E19a	KnownJunction	0	439.85	1419.87	525.25	525.84	88.55	539.48	2869.04
59	ER19a	ExonRegion	0	382.84	1411.37	473.09	471.02	78.92	505.84	2562.85
60	E19a_E21a	KnownJunction	0	394.98	1248.37	492.47	423.52	80.13	446.46	2173.66
61	E19a_E22a	NovelJunction	0	4.27	179.72	6.18	41.83	0.00	38.81	3.86
62	E19a_E23a	NovelJunction	1	0.00	6.04	0.83	21.13	0.00	13.94	0.00
63	ER20a	ExonRegion	0	12.36	18.18	5.53	3.66	0.00	3.15	3.22
64	E20a_E21a	KnownJunction	0	0.00	0.00	0.76	0.00	0.00	0.00	0.00
65	ER21a	ExonRegion	0	686.05	1570.26	823.73	530.92	142.77	591.25	3683.04
66	E21a_E22a	KnownJunction	0	505.64	1201.42	610.19	408.75	113.19	502.60	3114.05
67	ER22a	ExonRegion	0	768.37	1646.97	897.96	544.56	142.18	615.22	3820.36
68	E22a_E23a	KnownJunction	0	696.09	1586.95	821.29	503.16	115.61	566.49	3120.01
69	ER23a	ExonRegion	0	738.75	1794.10	880.45	598.01	112.41	641.16	3178.00
70	E23a_E24a	KnownJunction	0	626.81	1489.70	792.88	560.16	115.56	554.49	2837.99
71	ER24a	ExonRegion	0	676.58	1495.53	783.53	519.32	129.18	567.66	3263.13
72	E24a_E25a	KnownJunction	0	536.77	1156.65	575.42	453.78	128.43	440.05	2366.85
73	ER25a	ExonRegion	0	530.30	1328.70	617.96	533.48	130.33	540.85	2684.73
74	E25a_E26a	KnownJunction	0	585.92	1442.70	648.53	613.69	158.74	625.00	3220.24
75	ER26a	ExonRegion	0	838.95	1615.96	932.06	621.18	207.78	676.44	4145.98
76	E26a_E27a	KnownJunction	0	958.74	1577.36	1071.74	598.17	144.89	697.73	4415.08
77	E26a_E29a	NovelJunction	0	1.62	12.22	6.19	14.14	0.00	3.86	2.77
78	ER27a	ExonRegion	0	760.81	1913.14	875.21	687.42	134.77	804.64	4507.89
79	E27a_E28a	KnownJunction	0	552.24	1795.55	537.06	659.97	138.99	740.18	3332.50
80	ER28a	ExonRegion	0	642.60	1798.98	605.56	653.63	142.66	632.82	3333.64
81	E28a_E29a	KnownJunction	0	851.67	1708.27	798.33	584.76	152.66	608.19	3511.81
82	ER29a	ExonRegion	0	950.56	1768.45	865.13	718.36	250.62	734.35	4651.45
83	E29a_E30a	KnownJunction	0	478.50	960.96	365.88	440.23	151.53	457.02	2444.38
84	E29a_E30b	KnownJunction	0	118.77	299.26	106.05	150.84	36.35	120.84	629.89
85	E30_Ab	NovelBoundary	1	208.04	3.31	150.96	2.74	3.09	5.23	2.36
86	ER30a	ExonRegion	0	508.70	1081.83	409.31	529.96	156.30	505.11	2719.12
87	ER30b	ExonRegion	0	674.22	1372.94	524.27	623.95	154.10	662.89	3315.30
88	E30a_E31a	KnownJunction	0	767.50	1460.59	529.65	659.23	136.98	730.83	3554.95
89	ER31a	ExonRegion	0	706.58	1570.73	540.53	686.50	179.80	766.20	3673.84
90	E31a_E32a	KnownJunction	0	580.11	1292.21	418.69	518.55	197.38	620.39	2798.15
91	ER32a	ExonRegion	0	836.32	1457.91	583.92	597.29	221.13	733.72	3326.37
92	E32a_E33a	KnownJunction	0	807.21	1211.27	574.47	545.51	257.43	642.74	2892.27
93	ER33a	ExonRegion	0	969.15	1632.56	708.75	722.85	213.85	774.59	3709.74
94	E33a_E34a	KnownJunction	0	919.32	1602.90	643.10	632.93	185.46	687.20	2948.37
95	E33a_E35a	NovelJunction	0	14.80	38.15	10.27	25.60	0.00	27.60	15.84
96	ER34a	ExonRegion	0	1152.59	1669.03	785.88	641.84	211.70	735.85	3124.88
97	E34a_E35a	KnownJunction	0	1159.57	1562.07	823.87	665.36	189.79	692.02	3132.81
98	ER35a	ExonRegion	0	1114.64	1316.86	847.21	529.85	216.78	678.06	3225.26
99	E35a_E36a	KnownJunction	0	1038.50	1100.80	777.28	443.86	214.71	676.35	2836.89
100	ER36a	ExonRegion	0	1060.80	960.36	862.71	366.12	164.34	550.55	2386.78
101	E36_Da	KnownBoundary	0	368.06	307.27	376.11	127.73	67.82	198.99	1000.65
102	E36_Db	KnownBoundary	0	418.83	250.34	314.84	98.26	56.94	121.86	877.24
103	ER36b	ExonRegion	0	864.18	635.37	753.93	254.88	134.11	372.46	2095.42
104	ER36c	ExonRegion	0	733.46	566.14	678.34	254.38	119.11	312.05	1713.61
105	E36_Dc	KnownBoundary	0	387.46	398.67	402.86	212.26	116.62	177.09	1094.86
106	ER36d	ExonRegion	0	363.90	352.78	333.43	180.70	104.11	203.02	1044.58