Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RASA1	Gene	0	197.14	67.76	127.73	62.71	208.42	32.74	256.57
2	274376	Transcript	0	48.17	42.33	33.21	31.03	48.31	12.03	90.18
3	389275	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	22.86	29.38	16.37	21.61	24.14	8.65	44.91
5	E1a_E3a	KnownJunction	0	73.49	55.28	50.05	40.45	72.48	15.41	135.45
6	I1_AR10	ActiveIntronRegion	0	3.62	3.72	3.03	1.80	2.38	8.45	6.10
7	I1	Intron	0	3.29	2.49	5.10	4.89	1.59	10.07	2.16
8	I1_SR1	SilentIntronRegion	1	2.60	1.51	4.60	2.17	0.75	10.27	2.16
9	I1_AR1	ActiveIntronRegion	0	3.33	3.33	4.64	7.78	2.15	9.26	2.10
10	I1_AR2	ActiveIntronRegion	0	5.56	4.70	6.42	7.79	1.79	14.00	3.30
11	I1_SR2	SilentIntronRegion	0	3.96	2.49	6.45	4.94	2.38	9.74	1.93
12	I1	Intron	0	1.89	3.02	4.88	4.37	0.64	8.30	1.89
13	I1_AR1	ActiveIntronRegion	0	3.10	2.82	3.83	6.33	0.45	7.99	1.52
14	I1_SR1	SilentIntronRegion	0	3.47	1.42	5.36	6.92	1.12	7.96	2.70
15	I1_AR2	ActiveIntronRegion	1	1.90	2.71	5.10	5.57	0.90	11.95	2.54
16	I1_AR3	ActiveIntronRegion	0	0.55	3.35	4.84	6.24	0.00	12.18	0.59
17	I1_AR5	ActiveIntronRegion	1	3.99	2.29	4.86	3.75	1.12	13.94	3.76
18	I1_SR5	SilentIntronRegion	0	7.19	6.32	6.73	8.16	2.19	14.00	3.59
19	I1_AR6	ActiveIntronRegion	1	3.37	8.09	5.46	8.79	0.66	26.21	3.92
20	I1_SR6	SilentIntronRegion	0	1.20	6.47	7.01	3.81	0.19	11.50	3.06
21	I1_AR7	ActiveIntronRegion	0	0.52	7.60	4.50	3.66	0.78	9.89	2.35
22	I1_AR8	ActiveIntronRegion	0	2.98	3.69	4.46	5.81	0.93	11.17	3.10
23	I1_AR9	ActiveIntronRegion	0	1.46	4.95	3.97	4.83	0.59	8.34	3.27
24	I1_AR12	ActiveIntronRegion	0	1.39	2.39	5.95	4.68	0.79	7.91	1.80
25	I1_AR13	ActiveIntronRegion	0	1.72	3.13	5.59	3.96	0.31	8.51	1.79
26	I1_SR11	SilentIntronRegion	0	1.42	4.20	7.66	6.65	0.31	10.26	1.30
27	I1_AR14	ActiveIntronRegion	1	2.69	6.39	6.11	9.46	2.71	17.11	1.13
28	I1_SR12	SilentIntronRegion	1	2.53	4.85	9.32	7.08	0.69	14.78	0.85
29	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	I2	Intron	0	0.64	1.58	8.91	1.62	0.00	7.92	1.75
31	I2_SR1	SilentIntronRegion	1	0.65	1.60	9.04	1.65	0.00	8.05	1.78
32	E3_Aa	NovelBoundary	0	1.25	5.23	5.81	1.08	0.00	9.00	3.21
33	ER3a	ExonRegion	0	97.60	80.93	80.47	56.07	83.25	32.28	199.86
34	E3_Da	NovelBoundary	0	1.39	11.80	8.09	7.15	0.00	12.86	1.63
35	E3a_E4a	KnownJunction	0	138.94	78.87	91.60	69.52	117.04	23.48	216.53
36	I3	Intron	0	2.57	5.96	8.28	6.49	0.37	13.98	0.81
37	I3_SR1	SilentIntronRegion	0	2.58	5.98	8.31	6.51	0.37	14.04	0.81
38	E4_Aa	NovelBoundary	1	2.59	3.23	7.14	16.90	0.00	29.59	0.00
39	ER4a	ExonRegion	0	132.78	73.74	110.29	76.73	130.13	38.72	238.86
40	E4_Da	NovelBoundary	1	5.42	7.20	11.38	12.76	0.00	25.49	0.00
41	E4a_E5a	KnownJunction	0	108.85	68.25	85.62	62.31	109.43	22.03	235.88
42	ER5a	ExonRegion	0	129.40	72.38	98.59	68.62	111.84	23.92	215.40
43	E5_Da	NovelBoundary	1	1.80	8.72	5.50	3.44	0.00	21.92	1.38
44	E5a_E6a	KnownJunction	0	137.36	65.52	113.76	67.94	126.42	19.97	186.72
45	I5	Intron	1	2.94	4.50	8.61	7.58	0.38	16.77	1.45
46	I5_AR1	ActiveIntronRegion	1	3.82	5.23	10.27	8.02	0.45	16.22	1.32
47	I5_SR1	SilentIntronRegion	0	3.17	4.06	7.10	6.12	0.56	12.05	1.29
48	I5_AR2	ActiveIntronRegion	1	2.58	3.09	8.57	11.01	0.42	28.88	1.74
49	I5_SR2	SilentIntronRegion	1	2.33	5.04	8.80	6.99	0.18	15.69	1.54
50	E6_Aa	NovelBoundary	0	2.42	4.02	4.57	1.68	0.00	9.67	0.66
51	ER6a	ExonRegion	0	171.60	70.96	118.90	57.64	148.45	20.91	250.58
52	E6_Da	NovelBoundary	1	5.81	9.80	15.07	5.69	2.03	23.16	3.83
53	E6a_E7a	KnownJunction	0	97.42	56.64	76.87	56.27	89.10	15.36	177.21
54	I6	Intron	0	4.98	5.70	8.65	7.47	2.99	16.00	4.29
55	I6_SR1	SilentIntronRegion	1	3.77	2.62	7.57	5.05	2.46	11.88	3.72
56	I6_AR1	ActiveIntronRegion	0	5.81	6.54	9.25	14.07	3.55	12.07	5.63
57	I6_AR2	ActiveIntronRegion	1	5.23	6.75	8.92	6.37	3.04	19.05	4.10
58	E7_Aa	NovelBoundary	0	1.75	4.52	4.67	1.60	0.00	9.11	2.51
59	ER7a	ExonRegion	0	152.37	76.16	111.87	46.68	115.91	22.57	212.71
60	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	I7	Intron	0	4.62	3.28	7.65	6.33	1.85	13.16	3.21
62	I7_AR1	ActiveIntronRegion	1	3.20	0.56	6.11	2.12	0.45	9.48	0.90
63	I7_SR1	SilentIntronRegion	1	4.39	2.86	9.41	11.22	2.50	19.29	3.57
64	I7_AR3	ActiveIntronRegion	1	5.13	5.01	6.11	6.94	2.17	14.99	2.85
65	I7_SR3	SilentIntronRegion	0	4.29	3.33	8.22	4.90	2.34	10.52	3.95
66	I7_AR6	ActiveIntronRegion	1	5.80	2.47	8.93	4.86	1.11	12.46	3.73
67	ER8a	ExonRegion	0	202.49	76.28	135.26	47.67	125.60	28.66	237.43
68	E8a_E9a	KnownJunction	0	202.50	73.19	129.48	45.19	136.84	22.38	237.94
69	I8	Intron	0	6.48	3.36	6.84	4.46	1.87	8.61	3.25
70	I8_SR1	SilentIntronRegion	0	5.83	4.52	7.99	5.62	1.34	8.60	2.56
71	I8_AR2	ActiveIntronRegion	0	7.21	3.34	7.02	4.50	2.21	9.73	3.20
72	E9_Aa	NovelBoundary	1	98.70	4.31	66.49	6.75	1.01	18.55	4.63
73	ER9a	ExonRegion	0	173.12	73.37	124.19	58.70	155.96	30.47	255.07
74	E9a_E10a	KnownJunction	0	180.03	90.11	115.32	55.65	162.11	28.11	227.15
75	I9_AR1	ActiveIntronRegion	1	9.00	2.58	7.28	6.34	1.38	15.99	2.10
76	E10_Aa	NovelBoundary	0	96.33	39.80	57.80	31.80	41.24	13.69	103.13
77	ER10a	ExonRegion	0	154.51	76.60	116.84	53.82	125.35	26.61	224.17
78	E10a_E11a	KnownJunction	0	122.37	56.14	117.85	43.24	104.31	20.64	222.31
79	I10	Intron	1	3.25	3.89	5.97	8.70	1.25	14.46	1.66
80	I10_SR1	SilentIntronRegion	1	2.30	3.43	5.99	9.68	0.67	16.53	1.07
81	I10_AR1	ActiveIntronRegion	1	1.36	1.76	4.49	5.43	0.79	9.48	0.33
82	I10_AR2	ActiveIntronRegion	0	1.20	1.38	3.29	1.35	0.93	7.95	1.40
83	I10_SR2	SilentIntronRegion	0	2.29	3.79	4.57	7.33	0.73	8.95	1.54
84	I10_AR3	ActiveIntronRegion	1	7.39	6.44	9.47	13.84	3.08	24.42	2.94
85	I10_SR3	SilentIntronRegion	1	3.18	0.38	9.35	5.71	1.86	24.96	2.40
86	E11_Aa	NovelBoundary	1	1.80	3.18	6.88	10.70	2.33	25.75	0.70
87	ER11a	ExonRegion	0	168.38	64.77	137.02	51.50	146.79	25.89	247.35
88	E11_Da	NovelBoundary	0	8.75	6.86	9.87	9.64	5.51	14.50	0.86
89	E11a_E12a	KnownJunction	0	179.50	43.51	138.67	36.09	158.63	22.08	223.13
90	I11	Intron	1	4.82	5.28	11.54	8.12	1.77	15.82	2.77
91	I11_SR1	SilentIntronRegion	1	4.84	5.29	11.58	8.15	1.77	15.86	2.78
92	E12_Aa	NovelBoundary	1	4.46	1.00	6.34	5.99	1.15	13.45	2.69
93	ER12a	ExonRegion	0	163.40	50.63	129.78	41.83	153.39	25.64	246.39
94	E12_Da	NovelBoundary	1	12.87	15.34	14.37	29.58	5.49	24.74	20.22
95	E12a_E13a	KnownJunction	0	141.80	43.69	112.81	38.09	120.64	13.69	207.96
96	I12	Intron	1	23.86	13.52	29.31	21.29	11.39	29.47	23.19
97	I12_AR2	ActiveIntronRegion	0	20.20	7.93	15.27	11.89	8.40	13.39	17.89
98	I12_SR2	SilentIntronRegion	1	21.04	13.61	27.11	20.48	8.80	35.88	20.71
99	I12_AR3	ActiveIntronRegion	1	37.06	20.30	46.28	31.13	14.86	43.10	30.73
100	I12_SR3	SilentIntronRegion	1	14.10	16.61	27.91	15.79	8.13	27.26	18.56
101	I12_AR4	ActiveIntronRegion	0	19.79	18.58	37.27	32.45	15.24	36.57	29.75
102	I12_SR4	SilentIntronRegion	1	33.75	13.75	27.67	27.66	18.18	36.15	24.54
103	I12_AR5	ActiveIntronRegion	0	20.17	9.64	32.38	18.37	11.23	19.17	26.48
104	I12_AR6	ActiveIntronRegion	1	14.14	3.41	25.62	0.88	6.08	9.24	14.19
105	E13_Aa	NovelBoundary	0	17.49	9.33	33.81	11.46	10.28	6.75	17.93
106	ER13a	ExonRegion	0	146.06	54.61	128.19	44.51	129.02	20.28	230.88
107	E13_Da	NovelBoundary	0	16.14	8.07	29.19	12.00	2.88	17.45	7.08
108	E13a_E14a	KnownJunction	0	142.95	55.17	114.96	35.35	152.15	18.30	216.81
109	I13	Intron	0	20.43	10.65	27.03	17.32	3.63	19.84	7.61
110	I13_AR1	ActiveIntronRegion	0	20.65	12.42	28.32	23.74	3.35	23.04	6.48
111	I13_AR2	ActiveIntronRegion	0	19.00	14.02	26.86	15.30	4.58	11.82	5.62
112	I13_SR1	SilentIntronRegion	1	9.31	11.06	18.31	17.22	3.23	3.66	11.09
113	I13_AR3	ActiveIntronRegion	0	13.34	9.61	18.06	13.53	1.69	9.92	9.53
114	I13_SR2	SilentIntronRegion	0	25.37	11.24	30.31	17.63	5.02	21.58	7.39
115	I13_AR4	ActiveIntronRegion	1	22.02	11.30	30.50	18.35	2.84	24.19	9.75
116	E14_Aa	NovelBoundary	1	19.53	13.58	40.32	23.41	4.56	37.12	12.34
117	ER14a	ExonRegion	0	196.99	79.17	150.27	54.90	187.97	31.77	276.28
118	E14_Da	NovelBoundary	1	18.71	8.09	29.98	20.37	1.11	30.39	2.69
119	E14a_E15a	KnownJunction	0	211.78	77.19	172.53	45.68	219.26	37.41	295.94
120	I14	Intron	0	11.29	7.42	20.92	16.05	2.18	17.13	3.38
121	I14_SR1	SilentIntronRegion	1	9.60	9.03	21.21	16.48	2.32	21.39	3.96
122	I14_AR1	ActiveIntronRegion	1	12.48	8.09	20.16	20.53	2.35	20.20	4.34
123	I14_AR6	ActiveIntronRegion	0	12.55	7.08	25.48	12.35	2.07	13.65	2.36
124	ER15a	ExonRegion	0	185.78	77.27	153.72	60.83	195.58	40.04	286.26
125	E15_Da	NovelBoundary	1	12.65	13.14	34.14	24.79	0.00	24.52	3.25
126	E15a_E16a	KnownJunction	0	132.99	65.31	111.10	55.48	188.66	26.05	259.11
127	I15	Intron	0	15.38	8.60	18.18	11.13	3.76	17.73	2.71
128	I15_SR1	SilentIntronRegion	0	15.44	8.63	18.25	11.18	3.78	17.79	2.72
129	E16_Aa	NovelBoundary	0	18.06	17.42	23.98	18.53	9.84	28.33	3.75
130	ER16a	ExonRegion	0	137.73	59.58	115.13	59.95	188.38	24.76	260.39
131	E16_Da	NovelBoundary	1	15.10	10.56	34.32	19.23	4.26	22.51	4.41
132	E16a_E17a	KnownJunction	1	192.57	47.71	123.54	57.57	288.34	13.24	252.95
133	I16	Intron	0	9.93	10.03	19.09	17.45	3.75	14.83	3.21
134	I16_SR1	SilentIntronRegion	0	6.81	8.25	18.31	14.56	2.58	11.80	2.00
135	I16_AR1	ActiveIntronRegion	0	12.59	11.56	19.81	19.94	4.75	17.44	4.25
136	E17_Aa	NovelBoundary	0	7.46	15.76	23.91	29.15	0.00	24.90	6.46
137	ER17a	ExonRegion	0	240.37	83.18	152.89	94.08	265.42	34.09	303.42
138	E17_Da	NovelBoundary	1	8.86	5.39	37.98	28.31	1.75	23.72	5.32
139	E17a_E18a	KnownJunction	0	391.25	86.17	193.70	65.18	330.51	20.29	349.54
140	I17	Intron	0	11.03	6.72	19.12	13.50	6.80	14.17	4.23
141	I17_AR1	ActiveIntronRegion	0	11.08	6.75	19.23	13.57	6.84	14.25	4.26
142	ER18a	ExonRegion	0	432.68	129.74	211.78	125.55	412.90	66.43	404.20
143	E18_Da	NovelBoundary	0	17.71	27.43	33.51	43.89	15.61	45.56	10.22
144	E18a_E19a	KnownJunction	0	387.86	121.22	185.45	114.00	369.56	49.82	390.40
145	I18	Intron	0	10.05	11.31	18.02	16.19	8.75	20.63	4.54
146	I18_AR1	ActiveIntronRegion	0	13.23	16.76	20.41	19.18	14.19	32.82	6.07
147	I18_SR1	SilentIntronRegion	0	8.55	8.74	16.93	14.81	6.18	14.89	3.83
148	E19_Aa	NovelBoundary	0	6.76	12.93	27.02	24.71	4.33	18.57	6.99
149	ER19a	ExonRegion	0	344.44	83.79	179.61	91.30	387.90	44.00	333.83
150	E19_Da	NovelBoundary	0	12.12	18.26	28.74	24.46	8.69	25.27	9.77
151	E19a_E20a	KnownJunction	0	373.27	51.75	176.41	71.33	311.05	26.93	289.17
152	I19	Intron	0	19.91	17.81	34.25	25.01	13.94	26.00	6.29
153	I19_AR1	ActiveIntronRegion	0	15.75	15.21	26.46	19.09	11.62	23.60	6.05
154	I19_SR2	SilentIntronRegion	1	27.75	23.55	47.13	36.17	18.68	34.07	7.11
155	E20_Aa	NovelBoundary	0	10.01	19.65	21.07	21.59	9.50	22.06	4.10
156	ER20a	ExonRegion	0	325.33	64.86	219.82	94.72	330.82	43.90	343.66
157	E20_Da	NovelBoundary	0	19.88	12.51	30.68	18.34	12.86	13.83	6.76
158	E20a_E21a	KnownJunction	0	196.94	53.30	143.04	51.23	191.52	30.61	256.98
159	E20a_E22a	NovelJunction	1	17.92	10.01	6.39	9.08	2.28	0.00	3.61
160	I20	Intron	0	17.56	15.69	33.65	23.02	14.14	28.45	8.70
161	I20_SR1	SilentIntronRegion	1	17.61	15.74	33.74	23.08	14.18	28.53	8.73
162	E21_Aa	NovelBoundary	0	8.66	14.66	14.36	15.39	5.44	9.57	5.79
163	ER21a	ExonRegion	0	262.53	58.66	164.99	68.14	311.52	29.85	275.65
164	E21_Da	NovelBoundary	0	30.43	43.43	47.05	49.90	20.26	72.39	19.96
165	E21a_E22a	KnownJunction	0	287.92	39.38	163.07	40.85	380.88	15.73	279.25
166	I21	Intron	0	23.33	20.25	29.89	26.05	14.95	24.81	11.27
167	I21_AR1	ActiveIntronRegion	0	23.42	20.32	30.00	26.15	15.01	24.91	11.32
168	ER22a	ExonRegion	0	365.28	58.58	173.83	60.62	480.81	27.06	338.03
169	E22_Da	NovelBoundary	0	8.65	5.25	10.02	4.25	2.12	11.82	3.47
170	E22a_E23a	KnownJunction	0	445.45	70.12	188.93	88.91	627.41	39.56	394.80
171	I22	Intron	0	16.56	7.75	22.98	11.67	7.73	13.72	6.12
172	I22_AR1	ActiveIntronRegion	0	17.83	8.58	24.62	12.51	8.13	15.51	6.59
173	E23_Aa	NovelBoundary	1	20.50	23.22	42.45	34.97	14.52	22.70	7.97
174	ER23a	ExonRegion	0	612.70	118.69	252.04	112.58	528.15	68.38	462.51
175	E23_Da	NovelBoundary	1	26.39	12.51	52.48	26.44	14.66	12.14	9.39
176	E23a_E24a	KnownJunction	0	658.18	116.20	219.35	119.44	523.58	49.18	471.48
177	I23	Intron	0	14.90	9.75	27.80	16.64	7.30	11.10	5.37
178	I23_AR1	ActiveIntronRegion	0	20.34	12.80	35.20	19.92	9.82	14.11	7.47
179	I23_SR2	SilentIntronRegion	1	15.18	11.13	32.69	17.84	7.29	17.02	5.79
180	I23_AR2	ActiveIntronRegion	0	13.45	9.39	26.13	17.50	7.02	11.24	4.74
181	E24_Aa	NovelBoundary	0	16.74	10.69	21.79	23.30	7.79	14.79	5.19
182	ER24a	ExonRegion	0	552.24	106.08	228.73	106.94	696.76	56.47	523.67
183	E24_Da	NovelBoundary	1	19.68	15.97	50.78	21.16	16.62	20.80	10.96
184	E24a_E25a	KnownJunction	0	502.53	78.08	214.92	79.76	813.35	36.80	510.57
185	I24	Intron	0	21.25	12.70	28.99	16.61	12.80	11.42	8.43
186	I24_AR1	ActiveIntronRegion	0	22.51	14.56	33.49	22.36	15.75	13.99	10.12
187	I24_SR1	SilentIntronRegion	0	23.42	12.00	27.50	11.79	10.59	8.99	7.39
188	E25_Aa	NovelBoundary	1	18.36	8.04	34.50	18.04	17.29	8.20	8.03
189	ER25a	ExonRegion	0	302.14	84.38	156.89	68.23	371.86	34.26	381.84
190	E25_Da	NovelBoundary	1	21.56	22.15	33.90	41.72	12.96	6.59	9.72
191	E25a_E26a	KnownJunction	0	168.97	71.46	124.99	54.99	276.10	19.99	323.14
192	I25	Intron	0	13.86	7.63	18.32	13.45	9.57	5.91	6.16
193	I25_AR1	ActiveIntronRegion	0	9.95	9.85	14.13	15.81	9.71	7.66	7.17
194	I25_AR3	ActiveIntronRegion	0	20.67	5.70	28.04	13.27	9.92	5.01	5.26
195	E26_Aa	NovelBoundary	1	12.70	4.18	23.65	21.70	7.61	16.40	6.61
196	ER26a	ExonRegion	0	206.12	69.51	149.38	69.13	235.39	41.50	307.79
197	IG2	Intergenic	0	14.99	12.56	20.40	18.44	19.89	12.90	13.46
198	IG2_AR1	ActiveIntergenicRegion	0	15.00	12.58	20.42	18.45	19.91	12.91	13.47