Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SCAMP1	Gene	0	111.20	49.46	123.02	33.36	139.67	96.58	91.66
2	339292	Transcript	0	42.69	55.34	65.91	23.57	57.52	47.46	69.05
3	399194	Transcript	0	29.59	22.20	47.42	12.33	53.45	38.36	47.28
4	320280	Transcript	0	0.57	1.17	0.67	0.60	5.42	2.05	0.04
5	IG45_AR1	ActiveIntergenicRegion	0	2.33	0.80	4.16	0.31	8.19	0.00	1.44
6	IG45_SR2	SilentIntergenicRegion	0	2.32	0.55	1.84	0.33	7.59	0.99	0.48
7	IG45_AR3	ActiveIntergenicRegion	0	11.75	9.11	9.34	3.68	15.05	5.24	13.67
8	ER1a	ExonRegion	0	48.98	50.33	66.02	20.13	114.27	46.57	77.15
9	E1a_E3a	KnownJunction	0	24.38	72.38	30.71	24.06	25.50	56.15	39.86
10	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER3a	ExonRegion	0	54.56	92.44	59.62	39.18	64.32	107.16	99.94
12	E3a_E4a	KnownJunction	0	126.44	115.91	122.44	44.54	125.87	137.56	179.19
13	ER4a	ExonRegion	0	139.38	129.49	177.92	61.91	215.42	139.68	194.00
14	E4a_E5a	KnownJunction	0	80.61	156.13	126.86	61.98	389.29	149.03	128.25
15	ER5a	ExonRegion	0	151.73	126.38	184.09	53.76	237.72	137.56	155.89
16	E5_Da	NovelBoundary	1	94.41	0.00	109.65	0.00	1.18	0.00	0.89
17	E5a_E6a	KnownJunction	0	212.81	138.69	256.24	54.26	260.82	138.82	191.75
18	ER6a	ExonRegion	0	169.08	115.26	225.20	56.55	225.65	113.58	178.35
19	E6a_E7a	KnownJunction	0	172.31	115.54	224.84	56.62	287.61	124.38	195.67
20	ER7a	ExonRegion	0	132.47	104.45	180.76	51.24	224.84	102.79	182.86
21	E7a_E8a	KnownJunction	0	83.57	90.08	142.74	43.62	201.30	81.82	178.02
22	E7a_E10b	NovelJunction	1	6.79	26.51	13.29	4.39	20.77	15.70	18.03
23	ER8a	ExonRegion	0	101.51	81.20	149.69	43.45	204.19	74.14	181.93
24	E8a_E10a	KnownJunction	0	1.00	0.00	0.65	0.00	1.18	0.00	0.67
25	E8a_E10b	KnownJunction	0	54.71	43.32	101.01	26.52	32.78	39.66	90.13
26	E9_Aa	NovelBoundary	1	28.32	44.82	25.26	47.49	35.25	21.39	24.95
27	ER9a	ExonRegion	0	1.14	2.35	1.34	1.20	10.85	4.10	0.08
28	E9_Da	NovelBoundary	0	86.72	81.26	68.49	60.87	63.90	54.62	57.44
29	E9a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER10a	ExonRegion	0	73.77	72.28	149.02	31.17	157.52	72.33	156.17
31	ER10b	ExonRegion	0	110.16	107.88	163.88	63.45	228.36	110.01	193.93
32	E10a_E11a	KnownJunction	0	123.17	114.65	181.60	63.18	259.18	95.81	206.90
33	I10	Intron	1	10.49	3.42	8.08	4.94	0.48	20.22	2.28
34	I10_SR2	SilentIntronRegion	1	12.84	4.90	9.69	6.53	0.58	26.35	3.55
35	I10_AR2	ActiveIntronRegion	1	36.05	6.14	20.25	10.73	0.53	55.84	3.55
36	I10_SR3	SilentIntronRegion	1	22.06	5.67	19.93	6.64	0.55	28.02	5.02
37	E11_Aa	NovelBoundary	1	24.02	9.20	11.55	5.91	0.00	52.53	4.40
38	ER11a	ExonRegion	0	194.57	71.02	214.39	47.20	224.52	118.60	140.11
39	E11_Da	KnownBoundary	0	153.48	87.19	173.36	64.77	215.38	162.75	167.15
40	ER11b	ExonRegion	1	43.59	16.51	40.01	18.16	55.12	81.09	32.27
41	IG46	Intergenic	0	12.95	5.92	8.83	4.91	1.18	25.61	3.24
42	IG46_SR1	SilentIntergenicRegion	0	15.83	11.82	11.59	8.54	2.22	53.71	6.14
43	IG46_AR1	ActiveIntergenicRegion	0	13.08	7.64	9.13	5.81	1.22	42.50	5.99
44	IG46_SR2	SilentIntergenicRegion	0	2.40	3.07	3.71	2.13	0.00	14.50	3.06
45	IG46_AR2	ActiveIntergenicRegion	0	6.28	1.06	7.26	2.51	0.74	9.86	1.01
46	IG46_SR3	SilentIntergenicRegion	0	13.23	4.34	8.15	3.90	0.90	14.40	1.90