Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RPL37	Gene	0	27.58	26.46	28.78	29.57	80.51	19.42	41.67
2	274242	Transcript	0	15.53	28.65	18.17	37.44	82.06	23.19	45.39
3	315577	Transcript	0	0	0	0	0	0	0	0
4	IG30_SR1	SilentIntergenicRegion	0	1.88	8.76	3.16	7.35	2.02	20.84	0.66
5	IG30_AR1	ActiveIntergenicRegion	0	1.21	3.89	0.62	4.15	3.70	8.91	0.15
6	ER1a	ExonRegion	1	7.15	27.74	11.90	44.41	168.38	30.16	56.60
7	E1_Ab	NovelBoundary	1	28.46	102.17	46.99	160.87	646.24	91.95	208.09
8	E1a_E2a	KnownJunction	1	132.20	387.69	144.35	413.14	621.94	326.26	558.32
9	ER1b	ExonRegion	1	26.92	88.44	40.98	148.14	330.53	77.24	181.96
10	I1	Intron	0	7.63	15.83	16.34	17.74	15.53	10.16	12.43
11	I1_AR1	ActiveIntronRegion	1	7.66	15.89	16.39	17.81	15.58	10.19	12.47
12	E2_Aa	NovelBoundary	1	6.08	18.57	20.84	16.20	10.44	3.24	9.56
13	ER2a	ExonRegion	1	19.63	74.61	30.20	125.64	26.75	61.76	139.76
14	E2_Ab	KnownBoundary	1	93.05	320.43	89.24	281.72	124.12	236.29	250.10
15	ER2b	ExonRegion	1	7.99	29.64	8.81	40.65	0.16	20.11	36.56
16	ER2c	ExonRegion	0	0.10	1.93	0.13	2.15	0.32	2.34	0.50
17	E2_Db	NovelBoundary	0	2.70	16.79	4.44	7.53	7.40	6.89	2.95
18	E2b_E3a	KnownJunction	0	59.85	452.79	39.62	279.55	22.94	336.12	96.88
19	E2b_E4a	NovelJunction	0	0.00	16.08	0.82	26.06	0.00	10.61	0.00
20	I2	Intron	0	2.95	10.35	8.94	4.62	4.63	5.91	1.74
21	I2_AR1	ActiveIntronRegion	0	2.98	10.44	9.02	4.67	4.68	5.96	1.75
22	E3_Aa	NovelBoundary	1	2.97	11.32	13.41	9.32	9.20	9.49	3.74
23	ER3a	ExonRegion	1	48.34	3.22	21.83	4.64	120.83	6.09	4.56
24	E3_Da	NovelBoundary	0	4.32	4.10	5.58	8.80	5.46	4.42	8.71
25	E3a_E4a	KnownJunction	1	62.32	197.96	50.58	194.19	271.79	406.26	165.57
26	ER4a	ExonRegion	0	13.76	14.85	17.05	30.10	44.92	12.59	20.84
27	E4_Da	KnownBoundary	1	109.00	144.36	122.05	261.62	209.04	140.40	236.20
28	ER4b	ExonRegion	0	31.45	28.57	33.82	27.26	77.62	19.31	43.01
29	IG29	Intergenic	0	9.86	16.66	15.73	30.20	33.46	16.37	34.15
30	IG29_AR6	ActiveIntergenicRegion	0	1.68	0.00	1.47	0.00	21.36	0.00	0.00
31	IG29_SR4	SilentIntergenicRegion	0	12.28	14.48	17.02	12.70	39.93	16.16	21.48
32	IG29_AR4	ActiveIntergenicRegion	0	27.72	48.23	42.58	86.24	98.33	44.35	101.95