Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PDLIM3	Gene	0	134.86	106.83	205.36	216.01	33.01	320.08	2.96
2	284767	Transcript	0	27.69	33.18	19.99	36.49	5.23	94.12	0.00
3	284771	Transcript	0	72.37	102.80	172.33	196.84	30.34	236.75	3.74
4	284770	Transcript	0	4.39	8.93	1.55	5.63	0.00	7.93	0.00
5	ER1a	ExonRegion	0	22.51	39.26	45.71	74.09	9.72	84.13	1.40
6	E1a_E2a	KnownJunction	0	30.14	71.27	73.12	90.86	10.70	195.77	0.86
7	E1a_E7a	NovelJunction	1	0.00	1.63	0.00	6.99	0.00	22.91	0.00
8	ER2a	ExonRegion	0	85.71	159.85	190.05	251.63	33.58	384.68	2.47
9	E2a_E3a	KnownJunction	0	98.80	197.51	251.08	266.90	50.19	452.92	3.08
10	ER3a	ExonRegion	0	113.36	180.28	286.74	332.15	45.01	519.12	3.04
11	E3a_E4a	KnownJunction	0	94.41	150.11	258.41	307.89	29.25	463.42	2.72
12	E3a_E5a	KnownJunction	0	4.39	8.93	1.55	5.63	0.00	7.93	0.00
13	E3a_E7a	NovelJunction	1	0.00	8.28	5.03	44.67	0.00	19.54	0.00
14	E3a_E8a	NovelJunction	0	0.00	7.22	5.26	21.10	1.18	13.16	0.00
15	I3_AR1	ActiveIntronRegion	0	35.08	8.97	47.36	7.35	1.26	12.00	0.00
16	I3_AR2	ActiveIntronRegion	0	29.32	4.33	50.62	6.11	1.20	7.32	0.00
17	I3_SR2	SilentIntronRegion	0	34.88	5.62	58.25	7.23	0.87	9.43	0.00
18	I3_AR3	ActiveIntronRegion	0	37.46	8.35	52.15	8.56	0.99	13.45	0.00
19	I3_SR3	SilentIntronRegion	0	28.91	5.13	42.82	6.01	0.91	7.94	0.00
20	E4_Aa	NovelBoundary	0	55.69	17.55	125.22	7.83	1.06	15.89	0.53
21	ER4a	ExonRegion	0	120.08	161.05	269.48	298.85	41.28	433.19	3.83
22	E4a_E5a	KnownJunction	0	27.69	33.18	19.99	36.49	5.23	94.12	0.00
23	E4a_E7a	KnownJunction	0	72.37	102.80	172.33	196.84	30.34	236.75	3.74
24	E4a_E8a	NovelJunction	1	3.42	1.63	3.03	14.49	0.00	4.13	0.00
25	I4	Intron	0	21.47	10.60	46.02	13.22	0.45	10.44	0.00
26	I4_AR1	ActiveIntronRegion	0	22.20	11.72	49.59	12.38	0.44	10.87	0.00
27	E5_Aa	NovelBoundary	0	47.72	13.14	76.54	23.16	3.23	10.40	0.00
28	ER5a	ExonRegion	0	22.52	20.96	14.41	26.53	3.11	46.68	0.00
29	E5_Da	NovelBoundary	0	75.89	53.25	79.41	94.87	9.59	123.52	0.00
30	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	I5	Intron	0	64.48	21.13	71.73	33.69	8.42	58.80	0.40
32	I5_AR1	ActiveIntronRegion	0	66.02	32.47	71.03	49.46	8.39	91.60	0.44
33	I5_SR1	SilentIntronRegion	0	37.19	11.63	44.42	14.57	7.39	32.28	0.29
34	I5_AR2	ActiveIntronRegion	0	78.17	16.00	84.85	34.51	9.52	40.64	0.60
35	I5_AR5	ActiveIntronRegion	0	68.07	13.77	78.35	22.72	8.76	38.67	0.34
36	ER6a	ExonRegion	0	19.81	6.29	23.30	11.27	2.80	18.59	0.00
37	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	2.84	0.00	5.44	0.00
38	I6	Intron	0	39.13	5.78	48.70	6.80	1.41	8.11	0.10
39	I6_AR1	ActiveIntronRegion	0	36.28	5.18	46.30	6.14	1.40	7.26	0.05
40	I6_SR1	SilentIntronRegion	0	47.92	7.58	56.22	8.84	1.45	10.71	0.27
41	ER7a	ExonRegion	0	76.45	128.23	133.80	245.68	34.28	307.21	3.97
42	E7a_E8a	KnownJunction	0	69.93	123.82	123.27	227.51	31.86	280.67	3.00
43	I7	Intron	0	41.26	8.49	37.93	8.16	2.37	11.09	0.00
44	I7_SR1	SilentIntronRegion	0	41.37	8.52	38.04	8.19	2.38	11.12	0.00
45	ER8a	ExonRegion	0	73.50	140.65	119.32	254.59	24.94	339.37	3.42
46	E8a_E9a	KnownJunction	0	105.78	126.65	176.96	251.57	35.22	372.54	4.14
47	ER9a	ExonRegion	0	248.61	123.58	327.94	285.77	49.28	440.72	4.27
48	IG16_AR8	ActiveIntergenicRegion	0	40.78	6.86	44.51	27.56	1.85	16.79	0.00
49	IG16_SR5	SilentIntergenicRegion	0	86.76	19.54	88.47	48.46	1.13	54.53	0.00
50	IG16_AR7	ActiveIntergenicRegion	0	41.05	19.50	41.00	42.44	0.51	50.99	0.00
51	IG16_AR6	ActiveIntergenicRegion	0	9.69	1.83	11.43	7.26	0.00	6.85	0.00