Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AFF1	Gene	0	123.74	63.44	164.45	52.45	148.30	64.97	100.09
2	395146	Transcript	0	89.65	62.07	148.05	58.18	142.75	49.52	153.31
3	307808	Transcript	0	5.49	2.68	5.99	0.00	5.23	1.50	11.25
4	317423	Transcript	0	2.28	1.67	3.50	1.25	1.38	1.25	2.36
5	395142	Transcript	0	48.26	33.13	66.55	32.44	72.02	29.25	50.11
6	IG40	Intergenic	0	10.17	3.97	7.10	2.08	10.47	1.34	4.10
7	IG40_AR2	ActiveIntergenicRegion	0	15.76	3.29	8.14	1.30	16.47	0.86	5.94
8	IG40_SR2	SilentIntergenicRegion	0	11.21	2.78	7.97	1.38	9.18	0.80	3.26
9	IG40_AR7	ActiveIntergenicRegion	0	12.29	0.00	12.79	2.18	6.48	1.23	2.70
10	IG40_AR8	ActiveIntergenicRegion	0	15.15	1.41	11.30	1.25	6.84	1.23	3.00
11	IG40_AR9	ActiveIntergenicRegion	0	16.14	3.64	10.73	1.25	5.67	1.23	3.60
12	IG40_AR10	ActiveIntergenicRegion	0	15.03	4.43	9.78	1.15	11.06	0.73	4.88
13	IG40_AR12	ActiveIntergenicRegion	0	9.92	3.21	3.62	1.55	7.67	0.00	4.54
14	IG40_AR14	ActiveIntergenicRegion	0	6.70	5.03	2.71	0.00	8.56	0.00	2.02
15	IG40_AR15	ActiveIntergenicRegion	0	6.92	8.50	2.71	0.00	9.83	0.00	2.61
16	IG40_AR16	ActiveIntergenicRegion	0	8.88	11.20	5.04	0.00	11.97	0.00	4.05
17	IG40_SR4	SilentIntergenicRegion	0	14.90	8.47	8.06	1.34	10.89	0.08	7.53
18	IG40_AR17	ActiveIntergenicRegion	0	15.31	4.67	7.53	1.06	14.18	0.27	5.86
19	IG40_AR19	ActiveIntergenicRegion	0	13.26	1.37	11.26	0.78	10.33	1.99	4.22
20	IG40_AR20	ActiveIntergenicRegion	0	13.29	3.64	10.23	0.00	12.23	2.57	4.99
21	IG40_AR21	ActiveIntergenicRegion	0	17.76	6.36	12.12	2.89	14.83	3.09	7.01
22	IG40_SR6	SilentIntergenicRegion	0	9.71	3.60	8.78	1.48	14.25	1.01	5.49
23	IG40_AR22	ActiveIntergenicRegion	0	8.85	2.82	4.76	0.32	8.01	0.00	3.42
24	IG40_AR23	ActiveIntergenicRegion	0	15.52	4.71	8.17	1.30	13.34	0.73	4.91
25	IG40_SR7	SilentIntergenicRegion	0	6.10	2.99	4.56	1.40	8.61	0.23	2.17
26	IG40_AR24	ActiveIntergenicRegion	0	9.50	2.31	6.12	0.96	10.36	0.00	5.58
27	IG40_SR8	SilentIntergenicRegion	0	6.12	3.00	4.19	0.84	8.53	0.49	2.96
28	IG40_AR25	ActiveIntergenicRegion	0	15.58	5.77	7.75	0.83	19.80	0.82	6.16
29	IG40_SR9	SilentIntergenicRegion	0	7.12	2.37	5.98	1.76	9.54	0.71	2.47
30	IG40_AR26	ActiveIntergenicRegion	0	10.57	5.70	8.00	1.56	9.24	2.32	5.65
31	IG40_SR10	SilentIntergenicRegion	0	6.56	2.07	6.09	0.54	7.99	0.41	2.93
32	IG40_AR27	ActiveIntergenicRegion	0	24.86	9.13	15.77	2.94	23.92	0.44	10.00
33	IG40_SR11	SilentIntergenicRegion	0	6.09	2.34	3.74	0.62	11.38	0.50	2.38
34	IG40_AR28	ActiveIntergenicRegion	0	10.85	7.75	7.81	0.93	12.93	1.60	6.75
35	IG40_AR29	ActiveIntergenicRegion	0	14.93	9.65	13.70	7.08	16.82	4.26	6.35
36	IG40_SR13	SilentIntergenicRegion	0	5.72	2.82	5.46	2.06	8.09	0.95	3.10
37	IG40_AR30	ActiveIntergenicRegion	0	10.25	6.02	9.90	1.38	13.13	1.67	3.86
38	IG40_SR14	SilentIntergenicRegion	0	14.90	6.70	12.00	4.03	18.31	1.97	4.98
39	IG40_SR15	SilentIntergenicRegion	0	8.90	3.77	6.28	3.35	8.07	3.72	2.99
40	IG40_AR32	ActiveIntergenicRegion	0	9.44	7.19	10.89	8.54	13.42	2.69	4.69
41	IG40_AR33	ActiveIntergenicRegion	0	8.67	2.27	2.93	1.91	8.46	1.32	4.84
42	ER1a	ExonRegion	0	5.27	10.05	1.97	6.35	1.43	12.65	2.31
43	E1a_E3b	KnownJunction	0	18.59	39.25	13.41	30.91	2.10	42.24	6.05
44	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER3a	ExonRegion	0	7.78	7.14	14.06	4.99	6.28	4.44	7.42
46	ER3b	ExonRegion	0	141.13	111.27	168.23	67.74	124.55	80.79	84.08
47	E3a_E4a	KnownJunction	1	277.54	110.89	300.61	84.50	188.48	95.57	103.07
48	ER4a	ExonRegion	0	136.77	129.58	189.33	98.29	120.41	97.93	107.27
49	E4_Da	KnownBoundary	0	3.54	1.02	4.74	1.30	0.00	1.37	2.32
50	E4a_E6a	KnownJunction	1	89.21	72.04	126.69	61.17	75.96	33.04	86.83
51	ER4b	ExonRegion	0	1.20	1.21	2.03	1.25	0.62	0.39	1.20
52	E4b_E5a	KnownJunction	0	1.85	0.00	0.88	0.00	0.00	1.39	3.20
53	ER5a	ExonRegion	0	0.57	0.02	0.52	0.00	0.00	0.00	0.00
54	ER6a	ExonRegion	0	127.63	79.37	162.26	79.00	126.08	43.65	108.92
55	E6a_E7b	KnownJunction	0	135.19	63.68	151.41	84.17	183.36	39.02	99.00
56	ER7a	ExonRegion	0	37.85	17.62	44.88	19.33	49.81	12.26	28.84
57	ER7b	ExonRegion	0	269.15	98.69	277.03	85.95	253.94	61.30	158.40
58	E7a_E8a	KnownJunction	0	284.28	99.73	301.99	85.07	204.25	71.85	175.56
59	ER8a	ExonRegion	0	278.30	136.82	307.26	101.58	227.68	110.80	186.79
60	E8a_E9a	KnownJunction	0	174.39	111.00	188.17	78.89	226.03	99.48	118.51
61	ER9a	ExonRegion	0	264.09	147.95	310.59	124.67	252.33	102.52	191.01
62	E9a_E10a	KnownJunction	0	282.19	139.29	336.02	148.65	221.63	97.07	202.32
63	ER10a	ExonRegion	0	337.93	162.37	376.95	151.13	280.75	125.83	233.70
64	E10a_E11a	KnownJunction	0	202.63	110.71	224.71	82.00	198.46	91.71	140.55
65	E11a_E11b	KnownJunction	0	0.00	0.00	0.00	1.65	0.00	0.00	0.00
66	ER11a	ExonRegion	0	232.71	142.95	257.89	110.01	188.29	100.80	170.56
67	E11b_E12a	KnownJunction	1	107.27	99.86	126.66	83.44	132.12	40.76	88.98
68	ER11b	ExonRegion	0	153.84	118.81	196.98	95.77	132.65	72.09	131.41
69	ER11c	ExonRegion	0	144.62	112.25	174.95	95.27	131.03	61.79	117.96
70	ER12a	ExonRegion	0	129.29	101.05	180.96	90.81	145.11	63.36	123.70
71	E12_Da	KnownBoundary	0	66.48	52.15	93.09	46.62	68.86	41.67	87.15
72	E12a_E12b	KnownJunction	0	106.95	81.78	154.78	76.34	166.26	75.49	121.50
73	E12_Ab	KnownBoundary	0	43.48	18.71	53.03	18.94	61.83	18.41	26.05
74	ER12b	ExonRegion	0	138.83	98.81	199.38	92.28	188.16	87.86	146.16
75	ER12c	ExonRegion	0	107.54	72.98	167.41	75.15	118.83	72.84	102.13
76	E12b_E13a	KnownJunction	0	67.91	43.79	108.12	46.19	46.47	50.60	49.23
77	ER13a	ExonRegion	0	45.97	43.34	65.48	42.35	36.95	39.16	47.06
78	E13a_E14a	KnownJunction	0	74.60	69.54	130.90	62.09	92.65	58.96	73.20
79	ER14a	ExonRegion	0	90.13	76.56	146.81	61.23	91.78	57.32	86.22
80	E14_Da	KnownBoundary	0	105.33	74.58	162.54	61.71	92.49	69.46	104.16
81	ER14b	ExonRegion	0	105.93	73.78	162.26	78.31	72.31	70.71	108.06
82	E14b_E15a	KnownJunction	0	109.20	70.46	178.85	86.58	59.85	82.38	100.22
83	ER15a	ExonRegion	0	70.15	66.39	120.25	65.55	84.38	62.62	70.73
84	E15a_E16a	KnownJunction	0	75.37	76.90	131.10	69.76	102.42	61.34	79.91
85	ER16a	ExonRegion	0	83.76	82.00	168.70	72.05	112.88	61.23	111.15
86	E16a_E17a	KnownJunction	0	83.10	75.98	159.71	70.17	139.93	74.48	120.58
87	ER17a	ExonRegion	0	105.40	89.74	186.20	72.98	144.42	74.79	133.55
88	E17a_E18a	KnownJunction	0	126.79	96.97	197.43	78.32	174.19	80.45	131.08
89	ER18a	ExonRegion	0	135.44	91.82	225.56	65.58	171.10	78.51	159.24
90	E18a_E19a	KnownJunction	0	136.34	92.16	258.95	85.80	216.26	71.37	180.69
91	ER19a	ExonRegion	0	150.65	82.86	257.53	77.78	226.07	80.29	191.28
92	E19a_E20a	KnownJunction	0	124.54	51.94	238.81	56.51	282.81	71.66	189.86
93	E19a_E21a	NovelJunction	1	36.58	21.60	33.99	18.10	5.65	21.71	3.18
94	ER20a	ExonRegion	0	123.38	66.20	238.76	55.42	206.24	63.17	198.11
95	E20a_E21a	KnownJunction	0	85.94	61.58	146.58	58.38	138.71	47.86	145.74
96	E20a_E21b	KnownJunction	0	5.49	2.68	5.99	0.00	5.23	1.50	11.25
97	I20_AR4	ActiveIntronRegion	1	24.54	10.76	39.58	4.79	23.56	0.89	24.20
98	E21_Ab	NovelBoundary	1	30.41	1.26	47.41	0.00	2.74	0.00	3.04
99	ER21a	ExonRegion	0	93.37	62.57	149.53	57.98	146.79	51.19	160.89
100	ER21b	ExonRegion	0	94.69	76.24	142.86	56.41	128.32	59.44	132.02
101	E21a_E22a	KnownJunction	0	123.92	59.82	165.37	56.16	140.12	39.90	115.15
102	ER22a	ExonRegion	0	143.93	53.93	185.20	44.76	186.19	68.01	108.21
103	IG41	Intergenic	0	7.99	2.14	9.90	2.84	2.17	2.38	5.82
104	IG41_SR2	SilentIntergenicRegion	0	7.32	2.25	9.56	2.92	1.05	2.49	6.51
105	IG41_AR3	ActiveIntergenicRegion	0	9.67	2.70	7.85	2.06	0.24	1.37	3.77
106	IG41_AR4	ActiveIntergenicRegion	0	14.93	2.82	20.74	4.35	13.94	4.83	10.41