Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	WDFY3	Gene	0	72.89	34.62	97.03	59.91	58.34	36.24	54.79
2	295888	Transcript	0	31.57	20.08	60.99	44.71	41.44	26.18	33.46
3	322366	Transcript	1	23.85	18.97	8.13	13.82	1.18	3.24	21.53
4	ER1a	ExonRegion	0	1.98	5.73	3.26	10.67	1.08	5.69	1.85
5	E1a_E2a	KnownJunction	0	8.24	7.91	13.92	26.63	2.12	9.30	8.24
6	ER2a	ExonRegion	0	12.47	14.63	25.44	40.29	8.61	18.59	16.61
7	E2a_E3a	KnownJunction	0	13.35	17.23	26.63	28.20	7.52	16.78	9.27
8	E2a_E4a	NovelJunction	0	1.02	7.86	2.95	12.43	2.26	6.22	2.18
9	ER3a	ExonRegion	0	21.98	31.29	33.88	37.85	13.69	16.82	16.86
10	E3a_E4a	KnownJunction	0	21.06	27.09	35.90	44.38	9.68	22.54	19.09
11	ER4a	ExonRegion	0	29.42	39.18	52.82	45.58	15.82	30.12	25.23
12	E4a_E5a	KnownJunction	0	38.85	42.32	67.43	44.32	20.75	27.17	30.57
13	ER5a	ExonRegion	0	37.38	40.32	77.09	43.11	23.50	20.57	30.74
14	E5a_E6a	KnownJunction	1	34.83	45.03	78.51	48.79	34.05	16.67	28.35
15	ER6a	ExonRegion	0	52.67	35.65	87.41	44.10	23.57	26.44	31.63
16	E6a_E7a	KnownJunction	0	81.83	33.52	108.75	48.87	24.94	39.15	40.17
17	ER7a	ExonRegion	0	95.40	44.69	119.19	64.48	39.85	36.04	45.75
18	E7a_E8a	KnownJunction	0	89.26	45.53	108.87	60.77	48.09	44.68	41.60
19	ER8a	ExonRegion	0	96.91	50.48	117.08	68.74	43.09	30.56	48.37
20	E8a_E9a	KnownJunction	0	99.37	38.12	123.10	63.91	46.45	40.09	51.79
21	ER9a	ExonRegion	0	111.90	50.98	131.22	70.98	45.88	26.86	49.66
22	E9a_E10a	KnownJunction	1	121.02	43.40	112.63	53.59	50.79	27.79	40.03
23	ER10a	ExonRegion	0	127.01	41.48	142.15	70.61	46.96	37.87	56.62
24	E10a_E11a	KnownJunction	0	112.36	27.37	142.78	83.82	55.30	49.37	50.37
25	ER11a	ExonRegion	0	137.42	48.87	163.58	73.83	54.13	25.11	57.97
26	E11a_E12a	KnownJunction	1	174.18	47.66	190.57	82.55	43.20	20.74	70.07
27	ER12a	ExonRegion	0	172.32	64.67	188.03	90.98	55.32	36.24	72.27
28	E12a_E13a	KnownJunction	1	237.03	70.28	213.67	106.93	77.60	51.29	75.01
29	ER13a	ExonRegion	1	172.63	55.85	168.66	80.48	56.67	36.97	65.40
30	E13a_E14a	KnownJunction	1	163.38	69.75	139.12	78.40	68.51	42.34	57.97
31	ER14a	ExonRegion	0	118.04	59.63	139.92	81.99	60.67	41.48	72.62
32	E14a_E15a	KnownJunction	0	13.15	14.19	12.89	25.03	5.44	7.16	3.93
33	E14a_E16a	NovelJunction	0	69.91	28.03	110.05	13.82	48.41	20.61	42.68
34	I14	Intron	0	11.58	7.53	15.67	6.43	7.55	5.13	6.34
35	I14_AR1	ActiveIntronRegion	0	11.60	7.54	15.69	6.44	7.56	5.14	6.35
36	ER15a	ExonRegion	1	18.10	15.43	24.72	25.31	8.19	5.14	8.24
37	E15a_E16a	KnownJunction	1	15.82	12.72	32.49	38.63	3.92	5.74	13.30
38	ER16a	ExonRegion	0	48.93	31.61	56.54	42.66	34.13	19.08	41.31
39	E16a_E17a	KnownJunction	0	48.08	36.67	60.73	38.55	41.77	22.11	46.38
40	ER17a	ExonRegion	0	61.63	30.49	76.42	52.36	35.85	29.19	37.91
41	E17a_E18a	KnownJunction	0	94.88	33.31	97.86	62.26	60.33	26.91	46.68
42	ER18a	ExonRegion	0	106.94	43.52	120.44	65.52	58.32	46.65	65.58
43	E18a_E19a	KnownJunction	0	64.19	51.31	88.94	65.26	44.47	37.25	44.33
44	ER19a	ExonRegion	0	115.95	44.32	122.28	59.84	63.29	32.38	65.07
45	E19a_E20a	KnownJunction	1	219.27	43.72	188.24	73.34	58.95	32.62	62.20
46	ER20a	ExonRegion	0	128.05	39.54	127.50	73.15	59.24	37.11	64.31
47	E20a_E21a	KnownJunction	0	95.97	33.60	119.55	55.02	66.44	22.86	47.80
48	ER21a	ExonRegion	0	91.73	35.09	104.16	50.64	53.94	24.58	46.75
49	E21a_E22a	KnownJunction	1	81.06	53.59	106.99	58.63	52.72	19.78	41.15
50	ER22a	ExonRegion	0	99.91	52.69	119.92	67.19	59.70	24.87	59.50
51	E22a_E23a	KnownJunction	0	69.76	50.52	89.44	69.38	55.10	25.92	47.16
52	ER23a	ExonRegion	0	65.63	39.12	90.12	48.06	44.59	26.93	49.46
53	E23a_E24a	KnownJunction	0	46.72	39.38	82.84	50.47	41.26	22.97	40.46
54	ER24a	ExonRegion	0	55.52	46.55	86.81	76.60	47.91	37.23	44.31
55	E24a_E25a	KnownJunction	0	51.09	37.75	89.44	92.11	42.12	42.24	50.88
56	ER25a	ExonRegion	0	54.12	49.38	74.60	67.31	52.76	34.63	52.19
57	E25a_E26a	KnownJunction	0	39.25	49.36	79.07	55.48	55.40	27.71	45.29
58	ER26a	ExonRegion	0	50.64	38.37	72.89	54.52	48.60	25.69	50.30
59	E26a_E27a	KnownJunction	0	49.07	39.12	65.59	59.36	55.28	21.04	60.09
60	ER27a	ExonRegion	0	66.65	39.06	93.97	59.71	44.41	19.42	60.32
61	E27a_E28a	KnownJunction	0	72.23	28.66	103.70	51.96	48.04	27.01	67.50
62	ER28a	ExonRegion	0	73.31	36.46	104.85	53.38	48.93	20.89	64.93
63	E28a_E29a	KnownJunction	0	89.54	46.50	126.72	58.03	40.04	22.03	58.41
64	ER29a	ExonRegion	0	74.89	42.78	114.21	59.81	45.11	23.37	51.70
65	E29a_E30a	KnownJunction	0	75.12	32.16	113.40	57.30	37.90	20.13	43.19
66	ER30a	ExonRegion	0	68.19	23.52	92.54	49.22	45.55	18.97	45.91
67	E30a_E31a	KnownJunction	0	100.62	26.43	98.58	47.92	51.57	18.25	45.96
68	ER31a	ExonRegion	0	76.35	25.96	113.83	51.37	49.12	19.96	54.68
69	E31a_E32a	KnownJunction	0	67.56	32.00	109.63	58.98	53.11	29.88	58.74
70	ER32a	ExonRegion	0	92.00	39.10	122.85	75.22	61.21	35.44	68.80
71	E32a_E33a	KnownJunction	0	76.74	38.59	125.77	89.48	65.82	32.67	66.30
72	E33_Aa	NovelBoundary	1	34.53	0.00	44.26	0.00	0.00	0.00	2.36
73	ER33a	ExonRegion	0	89.13	29.25	119.81	66.47	60.78	30.27	67.79
74	E33a_E34a	KnownJunction	0	61.39	26.88	88.85	26.14	48.02	11.82	43.44
75	ER34a	ExonRegion	0	99.83	31.69	108.39	58.66	58.89	32.66	76.28
76	E34a_E35a	KnownJunction	0	80.80	39.75	105.72	59.52	50.88	41.49	78.59
77	ER35a	ExonRegion	0	104.15	31.44	105.88	49.52	55.63	56.03	76.99
78	E35a_E36a	KnownJunction	1	79.66	24.09	82.01	30.59	45.02	60.76	44.57
79	ER36a	ExonRegion	0	75.99	33.24	99.52	45.55	50.33	44.75	57.45
80	E36a_E37a	KnownJunction	0	60.85	27.69	90.73	43.73	30.59	20.72	45.98
81	ER37a	ExonRegion	0	59.05	26.39	85.93	30.63	46.47	19.98	51.84
82	E37a_E38a	KnownJunction	0	48.63	21.67	76.52	28.39	55.03	16.08	50.20
83	E37a_E39a	NovelJunction	0	10.58	4.41	8.72	16.34	0.00	12.94	3.93
84	ER38a	ExonRegion	0	55.40	20.67	77.10	30.83	50.99	17.91	49.30
85	E38a_E39a	KnownJunction	0	48.48	19.18	88.36	31.56	45.64	25.46	57.97
86	ER39a	ExonRegion	0	70.76	28.50	100.54	70.52	59.77	41.37	60.91
87	E39a_E40a	KnownJunction	0	69.75	38.96	95.48	85.07	64.94	51.80	75.08
88	ER40a	ExonRegion	0	64.02	33.85	86.08	87.49	65.13	33.86	63.71
89	E40a_E41a	KnownJunction	0	57.41	29.08	88.45	58.84	57.61	39.77	53.70
90	ER41a	ExonRegion	0	58.54	23.04	87.61	60.49	44.19	29.81	59.63
91	E41a_E42a	KnownJunction	0	60.10	21.49	98.42	55.10	54.91	21.23	61.44
92	ER42a	ExonRegion	0	63.02	36.15	92.20	62.40	45.65	27.60	58.42
93	E42a_E43a	KnownJunction	1	45.31	48.47	83.68	67.24	29.00	22.06	48.38
94	ER43a	ExonRegion	0	54.70	30.17	86.40	58.82	35.66	21.05	48.34
95	E43a_E44a	KnownJunction	1	55.68	13.98	67.38	55.97	38.80	21.01	42.54
96	ER44a	ExonRegion	0	50.78	26.40	64.77	59.84	40.05	33.48	47.88
97	E44a_E45a	KnownJunction	0	34.56	17.89	64.98	52.53	44.58	30.79	41.36
98	E44a_E46a	KnownJunction	1	23.85	18.97	8.13	13.82	1.18	3.24	21.53
99	ER45a	ExonRegion	0	32.39	22.11	66.04	47.63	37.73	27.50	34.70
100	E45a_E46a	KnownJunction	0	27.76	20.26	51.96	33.97	42.00	20.26	24.32
101	ER46a	ExonRegion	0	64.03	29.57	68.10	66.59	48.91	24.72	52.69
102	E46a_E47a	KnownJunction	0	73.70	32.10	83.97	75.12	46.43	26.37	63.34
103	ER47a	ExonRegion	0	76.45	31.68	91.29	78.20	53.39	34.90	65.25
104	E47a_E48a	KnownJunction	0	56.80	34.86	91.75	65.40	73.86	31.33	65.14
105	ER48a	ExonRegion	0	65.67	37.98	92.22	56.56	55.00	35.52	59.37
106	E48a_E49a	KnownJunction	0	51.64	33.31	82.34	50.04	71.90	40.55	49.80
107	ER49a	ExonRegion	0	59.73	38.02	94.05	57.96	59.86	39.54	51.73
108	E49a_E50a	KnownJunction	0	73.29	37.67	100.92	73.69	59.18	54.06	64.36
109	ER50a	ExonRegion	0	78.81	37.60	105.78	63.26	60.90	42.50	63.40
110	E50a_E51a	KnownJunction	0	63.67	36.73	111.74	60.60	74.62	38.75	58.93
111	ER51a	ExonRegion	0	71.55	37.44	111.18	67.21	70.83	40.44	65.39
112	E51a_E52a	KnownJunction	0	67.28	32.05	81.55	60.25	59.57	35.91	60.23
113	ER52a	ExonRegion	0	76.26	38.10	101.00	75.66	65.35	40.01	56.29
114	E52a_E53a	KnownJunction	0	73.92	37.15	101.51	80.68	82.83	30.39	53.76
115	ER53a	ExonRegion	0	87.05	52.43	121.10	77.66	77.06	44.55	71.96
116	E53a_E54a	KnownJunction	0	61.54	44.82	86.85	64.18	62.33	48.91	63.46
117	ER54a	ExonRegion	0	75.81	54.62	100.58	75.49	75.05	43.22	63.89
118	E54a_E55a	KnownJunction	0	94.40	43.66	96.41	90.89	109.20	37.76	65.48
119	ER55a	ExonRegion	0	83.06	50.33	102.75	73.68	72.89	27.45	63.49
120	E55a_E56a	KnownJunction	1	74.45	47.39	99.85	71.33	54.93	21.33	55.10
121	ER56a	ExonRegion	0	85.47	45.97	113.20	73.76	70.03	36.84	67.42
122	E56a_E57a	KnownJunction	0	96.43	50.07	119.66	92.71	74.58	51.13	66.51
123	ER57a	ExonRegion	0	80.13	31.89	96.60	70.30	76.57	42.12	62.34
124	E57a_E58a	KnownJunction	0	88.47	28.92	109.90	71.82	85.27	41.11	67.16
125	ER58a	ExonRegion	0	101.77	43.04	136.29	89.34	72.40	44.06	85.13
126	E58a_E59a	KnownJunction	0	102.29	43.43	136.91	74.55	78.15	36.53	78.42
127	ER59a	ExonRegion	0	84.26	47.09	134.92	73.86	69.89	37.15	83.87
128	E59a_E60a	KnownJunction	0	64.27	38.78	111.73	65.89	55.30	24.07	72.56
129	ER60a	ExonRegion	0	73.05	32.82	125.39	56.97	82.25	32.67	74.59
130	E60a_E61a	KnownJunction	0	65.83	32.24	89.63	58.68	79.05	27.17	57.50
131	ER61a	ExonRegion	0	70.01	41.98	92.44	62.43	80.73	34.39	74.06
132	E61a_E62a	KnownJunction	0	95.47	54.30	84.40	63.37	93.16	30.50	68.39
133	E61a_E63a	NovelJunction	0	4.17	8.72	15.49	5.69	3.32	4.56	3.53
134	ER62a	ExonRegion	0	95.84	53.72	103.85	88.96	95.71	45.81	87.33
135	E62a_E63a	KnownJunction	0	97.10	49.94	104.01	86.34	83.70	65.95	84.91
136	ER63a	ExonRegion	0	85.86	56.79	102.27	111.15	86.27	66.95	97.42
137	E63a_E64a	KnownJunction	0	62.59	47.21	78.42	107.82	66.07	51.16	95.12
138	ER64a	ExonRegion	0	58.79	45.00	83.57	103.47	67.94	68.10	79.05
139	E64a_E65a	KnownJunction	0	55.66	53.75	82.95	90.67	47.65	68.63	84.87
140	ER65a	ExonRegion	0	48.36	39.95	66.43	72.15	46.90	48.11	63.92
141	E65a_E66a	KnownJunction	0	43.28	28.79	59.84	68.22	67.87	40.15	62.40
142	ER66a	ExonRegion	0	45.36	47.62	73.16	73.05	73.58	50.34	70.85
143	E66a_E67a	KnownJunction	0	59.92	39.17	84.15	73.63	101.96	60.57	78.54
144	ER67a	ExonRegion	0	67.43	44.24	95.49	89.34	78.23	65.24	83.51
145	E67a_E68a	KnownJunction	0	88.57	52.18	126.99	97.96	91.82	67.91	111.61
146	ER68a	ExonRegion	1	51.46	19.24	82.26	45.37	74.30	43.63	43.84
147	IG31	Intergenic	0	24.13	13.85	9.42	4.99	19.78	2.43	25.23
148	IG31_AR1	ActiveIntergenicRegion	0	91.10	52.93	33.15	16.01	77.61	8.19	97.04