Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	INTS12	Gene	0	83.65	121.21	89.93	79.81	63.42	63.83	99.55
2	265150	Transcript	0	31.37	41.31	50.32	38.83	29.20	34.18	38.57
3	340139	Transcript	1	46.93	33.71	24.40	8.95	39.01	5.96	47.99
4	394735	Transcript	0	8.90	6.76	3.50	1.15	2.30	1.64	4.32
5	ER1a	ExonRegion	0	1.42	2.76	1.23	1.76	0.88	1.19	0.12
6	E1_Ab	KnownBoundary	0	13.44	30.00	8.81	9.62	3.99	21.87	2.87
7	ER1b	ExonRegion	0	32.43	68.57	41.82	49.73	46.73	52.29	47.76
8	E1a_E4a	KnownJunction	1	33.51	22.57	18.93	6.10	64.99	4.48	32.88
9	E1a_E5a	KnownJunction	0	61.32	79.87	99.41	75.91	57.52	67.16	77.02
10	E1a_E6a	NovelJunction	0	0.00	2.86	0.65	9.05	0.00	1.45	0.69
11	ER2a	ExonRegion	0	8.29	14.70	12.15	3.45	7.10	5.12	13.49
12	E2a_E3a	KnownJunction	0	2.92	0.00	0.00	0.00	0.00	0.00	0.00
13	E2a_E5a	NovelJunction	1	6.44	13.37	7.79	0.00	3.80	4.98	22.37
14	ER3a	ExonRegion	1	24.37	12.34	1.87	1.13	2.08	1.45	3.80
15	E3_Da	NovelBoundary	1	30.98	11.27	2.69	0.00	3.99	3.70	6.85
16	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E4_Aa	NovelBoundary	1	27.40	14.79	7.49	1.63	5.44	4.58	1.68
18	ER4a	ExonRegion	1	51.86	44.36	18.60	11.45	30.45	6.74	44.14
19	E4a_E5a	KnownJunction	1	55.43	34.21	35.67	9.29	21.60	6.67	66.97
20	I4_AR2	ActiveIntronRegion	1	37.60	12.91	2.77	0.59	2.03	1.12	0.18
21	ER5a	ExonRegion	0	98.88	152.46	122.14	109.88	68.31	78.74	138.80
22	E5a_E6a	KnownJunction	0	139.71	159.68	241.22	130.82	67.43	95.65	194.31
23	ER6a	ExonRegion	0	102.75	191.61	150.52	104.83	80.91	94.36	148.85
24	E6a_E7a	KnownJunction	0	74.27	186.05	108.18	99.10	80.78	99.11	131.43
25	ER7a	ExonRegion	0	96.24	212.24	135.66	131.77	88.39	108.45	169.36
26	E7a_E8a	KnownJunction	0	125.27	195.01	162.73	132.56	67.29	112.99	160.47
27	ER8a	ExonRegion	0	148.20	205.74	177.41	135.83	109.58	132.19	186.77
28	E8_Da	NovelBoundary	1	24.02	4.41	4.48	3.01	0.00	0.00	4.04
29	E8a_E9a	KnownJunction	0	203.03	221.28	233.32	163.36	116.58	153.83	154.79
30	I8_SR2	SilentIntronRegion	1	20.65	8.67	2.40	1.64	1.64	1.36	3.22
31	I8_AR2	ActiveIntronRegion	1	26.61	14.61	4.24	2.77	1.87	1.10	4.28
32	ER9a	ExonRegion	0	189.96	217.61	208.61	154.25	114.65	127.22	158.25
33	E9a_E10a	KnownJunction	0	164.60	194.17	191.25	146.24	158.90	97.77	139.60
34	ER10a	ExonRegion	0	137.46	195.77	138.13	139.22	114.92	103.37	163.02
35	ER10b	ExonRegion	0	1.54	4.86	6.77	0.00	6.21	4.90	2.70
36	IG39	Intergenic	0	17.92	9.17	0.57	0.27	0.05	0.81	0.11
37	IG39_AR14	ActiveIntergenicRegion	0	22.02	8.77	5.28	1.25	2.73	2.16	4.85
38	IG39_AR13	ActiveIntergenicRegion	0	49.93	23.54	1.45	0.50	0.08	2.58	0.29
39	IG39_AR12	ActiveIntergenicRegion	0	86.76	39.33	3.05	1.04	0.00	3.58	0.28
40	IG39_AR11	ActiveIntergenicRegion	0	221.58	65.21	3.75	1.46	0.00	5.47	0.79
41	IG39_AR10	ActiveIntergenicRegion	0	93.11	36.96	2.31	0.48	0.00	3.28	0.00
42	IG39_AR9	ActiveIntergenicRegion	0	34.67	31.84	2.56	2.75	0.00	3.97	0.00
43	IG39_SR9	SilentIntergenicRegion	0	11.92	7.77	0.12	0.12	0.06	0.18	0.00
44	IG39_AR8	ActiveIntergenicRegion	0	68.02	66.63	1.64	3.47	0.00	4.32	0.40
45	IG39_SR8	SilentIntergenicRegion	0	102.75	75.72	3.15	1.94	0.00	6.32	0.67
46	IG39_AR7	ActiveIntergenicRegion	0	61.30	50.22	3.45	0.74	0.00	2.76	0.01
47	IG39_AR6	ActiveIntergenicRegion	0	59.05	24.88	2.94	1.58	0.00	5.95	0.43
48	IG39_AR5	ActiveIntergenicRegion	0	73.65	22.03	1.64	0.87	0.00	5.24	0.00
49	IG39_AR4	ActiveIntergenicRegion	0	63.95	29.50	2.53	0.00	0.00	2.44	0.77
50	IG39_SR4	SilentIntergenicRegion	0	10.74	18.64	0.37	0.92	0.00	1.50	0.00
51	IG39_AR3	ActiveIntergenicRegion	0	111.99	97.09	2.15	2.79	0.00	8.39	0.00
52	IG39_SR3	SilentIntergenicRegion	0	48.16	9.16	0.00	0.88	0.00	0.00	0.00
53	IG39_AR2	ActiveIntergenicRegion	0	34.99	12.43	0.62	0.57	0.00	0.56	0.00
54	IG39_SR2	SilentIntergenicRegion	0	16.33	5.98	0.39	0.11	0.00	0.47	0.02
55	IG39_AR1	ActiveIntergenicRegion	0	23.31	1.42	0.64	0.00	0.00	0.00	0.00
56	IG39_SR1	SilentIntergenicRegion	0	9.64	4.01	0.28	0.02	0.00	0.31	0.02