Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MTHFD2L	Gene	0	81.92	36.59	298.73	79.51	8.20	24.53	26.51
2	331145	Transcript	0	6.51	2.84	25.52	2.00	0.00	2.53	1.18
3	359107	Transcript	0	0.01	0.00	0.01	0.00	0.01	0.00	0.00
4	325278	Transcript	0	0	0	0	0	0	0	0
5	395759	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	IG1_AR2	ActiveIntergenicRegion	0	31.52	18.64	9.55	2.34	0.00	1.21	6.93
7	IG1_SR3	SilentIntergenicRegion	0	8.03	10.98	35.50	5.97	0.00	0.20	3.37
8	IG1_AR3	ActiveIntergenicRegion	0	6.38	15.35	44.62	8.13	0.00	0.61	3.68
9	IG1_SR4	SilentIntergenicRegion	0	11.52	3.89	28.92	3.66	0.00	0.27	2.91
10	IG1_AR4	ActiveIntergenicRegion	0	13.91	13.48	25.54	7.37	0.00	1.40	7.35
11	IG1_SR5	SilentIntergenicRegion	0	23.13	13.70	31.56	7.99	0.00	1.58	6.11
12	ER1a	ExonRegion	0	9.56	6.88	9.59	0.67	0.12	0.02	2.75
13	E1_Da	NovelBoundary	1	10.51	11.45	17.96	0.00	0.00	1.50	2.58
14	E1a_E2a	KnownJunction	0	1.99	0.00	0.00	0.00	1.18	0.00	0.00
15	ER2a	ExonRegion	1	27.40	44.50	40.23	18.83	0.30	4.75	11.20
16	E2_Da	NovelBoundary	1	10.28	12.64	16.61	1.68	0.00	2.71	6.51
17	E2a_E3a	KnownJunction	1	62.79	47.29	63.10	38.47	0.00	2.92	34.83
18	E2a_E4a	NovelJunction	0	2.24	7.96	21.30	19.94	0.00	3.54	4.50
19	I2	Intron	1	21.25	15.37	17.39	3.41	0.34	1.13	6.38
20	I2_SR1	SilentIntronRegion	1	16.87	12.42	12.95	2.14	0.02	0.66	5.33
21	I2_AR1	ActiveIntronRegion	1	209.56	62.43	187.19	35.15	0.00	6.65	29.42
22	I2_SR2	SilentIntronRegion	1	50.90	59.00	44.59	32.56	0.26	9.78	13.19
23	I2_AR2	ActiveIntronRegion	1	28.24	38.02	34.32	12.57	0.00	3.83	6.31
24	I2_SR3	SilentIntronRegion	0	13.12	7.65	11.46	0.85	0.06	0.62	4.22
25	I2_AR3	ActiveIntronRegion	1	20.39	19.68	13.80	4.54	1.80	1.36	8.09
26	I2_SR4	SilentIntronRegion	1	18.77	23.28	17.61	4.91	0.90	0.20	8.18
27	I2_AR4	ActiveIntronRegion	1	25.36	30.57	25.40	4.99	1.62	0.00	13.83
28	I2_AR5	ActiveIntronRegion	1	58.08	26.91	35.58	4.79	1.22	3.00	17.90
29	I2_AR6	ActiveIntronRegion	1	35.26	8.48	33.17	0.74	0.12	0.00	8.53
30	I2_AR7	ActiveIntronRegion	1	25.75	10.97	26.22	2.38	1.33	0.00	12.19
31	I2_SR5	SilentIntronRegion	1	33.03	20.06	23.45	2.25	0.42	0.99	8.32
32	E3_Aa	NovelBoundary	0	21.65	3.81	8.25	0.00	0.00	1.26	10.50
33	ER3a	ExonRegion	0	34.99	26.55	94.26	26.22	0.02	10.10	12.10
34	E3_Da	NovelBoundary	1	273.26	186.16	393.13	97.64	16.94	33.71	110.25
35	E3a_E4a	KnownJunction	0	40.11	24.85	155.83	34.76	0.00	16.94	10.52
36	I3	Intron	1	111.64	52.44	164.49	24.02	12.80	9.57	26.39
37	I3_AR1	ActiveIntronRegion	1	228.00	111.58	312.29	57.21	29.37	23.50	52.40
38	I3_SR1	SilentIntronRegion	1	61.40	25.20	80.51	8.32	8.04	3.27	13.01
39	I3_SR2	SilentIntronRegion	1	40.75	7.81	57.02	2.49	4.99	0.00	7.95
40	I3_AR2	ActiveIntronRegion	1	27.26	9.31	62.03	3.62	3.59	0.95	5.35
41	I3_AR3	ActiveIntronRegion	1	67.88	21.37	123.24	6.82	6.66	0.86	14.46
42	I3_SR3	SilentIntronRegion	1	18.98	11.43	33.84	4.02	3.03	0.00	4.25
43	I3_AR4	ActiveIntronRegion	1	108.70	47.78	161.77	10.77	9.13	8.33	23.55
44	I3_SR4	SilentIntronRegion	1	51.35	34.32	90.00	10.18	6.34	3.18	18.52
45	I3_AR5	ActiveIntronRegion	1	47.29	18.91	118.76	9.33	3.83	5.10	16.41
46	I3_SR5	SilentIntronRegion	1	42.32	12.17	67.38	5.62	1.24	0.95	7.43
47	E4_Aa	NovelBoundary	1	47.10	11.40	128.84	3.25	1.15	0.00	8.67
48	ER4a	ExonRegion	0	106.62	65.37	372.03	133.86	10.94	29.87	46.69
49	E4a_E5a	KnownJunction	0	102.46	67.57	393.59	165.55	7.12	51.80	57.96
50	I4	Intron	0	8.53	7.82	7.83	1.61	0.21	0.63	1.74
51	I4_SR1	SilentIntronRegion	0	8.56	7.84	7.86	1.61	0.21	0.63	1.74
52	ER5a	ExonRegion	0	120.71	73.91	454.90	170.35	13.50	45.91	57.16
53	E5_Da	NovelBoundary	1	12.83	15.66	24.30	7.48	3.18	4.74	8.21
54	E5a_E6a	KnownJunction	0	9.40	4.10	36.30	2.82	0.00	3.32	1.72
55	E5a_E8a	KnownJunction	0	84.55	50.44	361.11	165.23	13.90	45.77	43.61
56	ER6a	ExonRegion	0	3.62	1.57	14.73	1.19	0.00	1.73	0.64
57	E6_Da	NovelBoundary	1	26.60	16.45	45.44	13.74	7.38	3.30	10.92
58	I6	Intron	0	15.25	8.89	23.44	3.53	3.51	2.15	7.39
59	I6_AR1	ActiveIntronRegion	1	18.40	15.70	41.86	4.87	3.53	3.99	6.08
60	I6_AR2	ActiveIntronRegion	0	16.08	9.21	23.04	3.79	3.75	2.25	8.17
61	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER8a	ExonRegion	0	108.52	81.26	363.09	172.48	15.77	42.92	55.68
63	E8a_E9a	KnownJunction	0	113.21	68.91	436.50	164.77	20.01	31.01	41.65
64	ER9a	ExonRegion	0	105.28	79.52	379.47	174.39	18.92	42.97	49.16
65	E9a_E10a	KnownJunction	0	107.15	82.02	344.86	147.27	16.67	45.64	50.66
66	ER10a	ExonRegion	0	92.33	57.83	322.16	127.61	14.83	30.49	38.42
67	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	E10a_E12a	KnownJunction	0	55.64	27.82	219.29	85.58	6.13	21.09	18.76
69	E10a_E13a	NovelJunction	0	1.03	1.52	9.89	9.21	0.00	1.66	2.52
70	I10_AR1	ActiveIntronRegion	0	23.49	9.35	34.01	5.97	2.40	2.01	4.54
71	I10_SR2	SilentIntronRegion	1	28.48	13.03	50.38	6.97	3.54	2.40	6.32
72	I10_AR2	ActiveIntronRegion	0	29.59	14.79	50.58	11.93	5.12	4.23	11.32
73	I10_SR3	SilentIntronRegion	0	19.59	8.32	35.31	6.86	3.38	2.68	9.80
74	I10_AR4	ActiveIntronRegion	0	15.12	8.03	31.97	1.83	1.92	0.71	7.33
75	I10_AR5	ActiveIntronRegion	0	23.36	11.55	44.22	5.46	3.47	3.07	5.32
76	I10_SR5	SilentIntronRegion	0	19.85	10.74	29.60	6.00	3.44	5.75	4.48
77	I10_AR7	ActiveIntronRegion	0	25.05	8.75	27.67	5.52	2.80	5.69	6.45
78	E11_Aa	NovelBoundary	0	40.81	14.03	67.12	25.41	11.00	3.11	7.85
79	ER11a	ExonRegion	0	0.02	0.00	0.02	0.00	0.02	0.00	0.00
80	E11_Da	NovelBoundary	1	42.49	13.37	52.15	22.49	4.36	2.52	18.36
81	ER12a	ExonRegion	0	62.17	32.57	243.36	69.02	7.81	19.16	20.16
82	E12a_E13a	KnownJunction	1	56.66	11.19	189.86	47.30	3.25	10.43	7.65
83	I12_AR4	ActiveIntronRegion	1	37.89	14.16	75.48	14.80	1.45	9.89	7.95
84	I12_SR4	SilentIntronRegion	1	30.97	9.48	69.79	9.26	1.20	3.51	6.38
85	ER13a	ExonRegion	0	89.02	25.66	335.75	63.05	7.37	24.29	21.52