Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LPHN3	Gene	0	8.61	0.37	1.51	2.00	37.36	2.82	2.56
2	355061	Transcript	0	9.03	0.67	1.41	2.93	27.67	1.28	2.20
3	295349	Transcript	0	6.79	1.76	2.43	1.16	46.45	1.43	2.88
4	280009	Transcript	0	0.38	0.00	0.29	0.01	1.84	0.61	0.30
5	ER1a	ExonRegion	0	9.86	0.54	1.40	2.19	41.94	0.45	2.80
6	E1a_E4b	KnownJunction	0	11.83	1.47	2.23	4.33	36.38	2.28	1.99
7	I1_AR1	ActiveIntronRegion	0	1.05	0.00	0.92	0.00	7.54	0.00	0.75
8	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER4a	ExonRegion	0	3.07	0.30	0.51	0.94	13.57	0.61	0.84
11	ER4b	ExonRegion	0	18.75	0.68	2.99	3.23	71.48	1.08	3.98
12	E4a_E5a	KnownJunction	0	24.38	0.97	2.36	1.68	71.79	1.66	3.75
13	ER5a	ExonRegion	0	10.17	0.91	0.81	1.22	55.29	0.36	0.92
14	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	15.84	0.00	0.00
15	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E5a_E7a	NovelJunction	0	10.85	0.00	0.88	4.47	21.46	0.00	1.52
17	I5	Intron	0	0.13	0.00	0.00	0.00	9.87	0.00	0.11
18	I5_AR1	ActiveIntronRegion	0	0.13	0.00	0.00	0.00	9.91	0.00	0.11
19	E6a_E7a	KnownJunction	0	0.95	0.00	0.00	0.00	0.00	0.00	0.00
20	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.97	0.00	0.00
21	ER7a	ExonRegion	0	7.52	0.23	1.13	3.28	33.48	1.71	2.53
22	E7_Da	NovelBoundary	0	1.03	0.00	0.00	0.00	17.75	0.00	0.00
23	E7a_E8a	KnownJunction	0	10.25	0.00	0.83	4.12	30.73	1.45	2.68
24	I7_SR1	SilentIntronRegion	0	0.21	0.03	0.06	0.05	23.11	0.08	0.03
25	ER8a	ExonRegion	0	9.99	0.00	1.12	1.71	23.19	1.98	3.46
26	E8a_E9a	KnownJunction	0	6.48	0.00	1.41	1.27	16.62	4.80	2.19
27	ER9a	ExonRegion	0	7.08	0.00	0.82	1.58	27.97	2.24	2.73
28	E9a_E10a	KnownJunction	0	3.37	0.00	1.48	1.41	34.05	3.06	0.63
29	ER10a	ExonRegion	0	5.18	0.00	1.43	1.70	34.03	1.76	1.36
30	E10a_E11a	KnownJunction	0	7.79	0.00	2.36	2.84	26.65	4.34	0.00
31	ER11a	ExonRegion	0	5.09	0.50	2.19	0.95	30.50	1.66	2.13
32	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	4.15	0.00	0.83
33	E11a_E13a	KnownJunction	0	0.58	0.00	1.62	0.00	23.42	0.00	0.83
34	ER12a	ExonRegion	0	1.12	0.00	1.01	0.10	6.02	1.63	1.07
35	E12a_E13a	KnownJunction	0	2.34	0.00	1.62	0.00	6.36	3.89	0.77
36	ER13a	ExonRegion	0	4.98	0.00	0.92	1.69	28.87	3.28	1.01
37	E13_Da	KnownBoundary	0	5.64	0.00	0.89	1.68	46.27	5.55	1.48
38	E13a_E26b	KnownJunction	0	5.39	0.00	0.60	2.28	4.70	1.13	1.81
39	ER13b	ExonRegion	0	5.88	0.00	0.65	1.22	39.25	2.99	2.88
40	E13b_E14a	KnownJunction	0	4.44	0.00	0.63	1.19	35.78	0.00	4.94
41	ER14a	ExonRegion	0	8.38	0.00	0.20	1.38	44.08	1.52	2.84
42	E14a_E15a	KnownJunction	0	11.05	0.00	0.00	0.00	40.76	0.00	5.62
43	ER15a	ExonRegion	0	13.54	0.44	1.29	0.50	58.68	1.25	2.26
44	E15a_E16a	KnownJunction	0	14.64	0.00	1.85	1.03	54.24	4.58	3.50
45	ER16a	ExonRegion	0	16.07	0.52	2.68	2.12	65.42	3.44	3.11
46	E16a_E17a	KnownJunction	0	8.18	0.00	2.60	2.60	44.40	1.55	1.63
47	ER17a	ExonRegion	0	6.92	0.00	1.80	3.12	43.94	2.20	3.62
48	E17a_E18a	KnownJunction	0	9.16	0.00	2.56	0.00	26.70	2.89	0.79
49	ER18a	ExonRegion	0	4.72	0.38	0.67	0.86	28.30	2.79	2.70
50	E18a_E19a	KnownJunction	0	5.09	0.00	0.00	0.00	32.87	0.00	2.18
51	ER19a	ExonRegion	0	5.33	0.09	0.69	1.06	28.42	0.46	3.61
52	E19a_E20a	KnownJunction	0	7.69	0.00	1.47	1.35	28.33	1.50	4.56
53	ER20a	ExonRegion	0	7.50	3.75	1.19	0.58	39.58	1.11	4.13
54	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E20a_E22a	KnownJunction	0	4.91	2.15	1.24	2.33	48.64	1.66	4.11
56	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER22a	ExonRegion	0	13.60	2.35	2.73	3.60	64.57	4.28	4.37
59	E22a_E23a	KnownJunction	0	17.01	0.00	3.82	4.90	109.75	8.90	7.14
60	ER23a	ExonRegion	0	17.27	1.21	4.21	3.31	75.92	7.07	4.50
61	E23a_E24a	KnownJunction	0	17.91	1.44	7.10	1.11	65.98	6.27	5.79
62	ER24a	ExonRegion	0	11.89	0.99	4.49	0.85	69.92	2.94	3.78
63	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E24a_E26a	KnownJunction	0	8.68	1.37	3.62	0.00	44.26	1.21	1.65
65	ER25a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER26a	ExonRegion	0	8.35	0.25	1.60	2.27	35.38	4.83	2.65
68	E26_Ab	KnownBoundary	0	9.38	0.00	0.89	2.98	8.97	1.26	3.50
69	ER26b	ExonRegion	0	5.34	0.00	0.37	2.61	11.11	2.25	1.14
70	E26_Da	KnownBoundary	0	3.91	0.00	0.79	4.42	12.40	4.18	0.00
71	ER26c	ExonRegion	0	7.89	0.00	1.39	1.01	22.84	2.83	1.65