Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RFC1	Gene	0	119.17	101.67	163.13	132.32	273.04	85.02	121.74
2	349703	Transcript	0	176.03	72.04	148.01	114.16	341.11	67.48	96.46
3	381897	Transcript	0	54.61	24.92	71.26	40.90	129.20	17.91	43.64
4	ER1a	ExonRegion	0	40.50	45.72	46.93	50.82	68.35	22.52	25.86
5	E1a_E2a	KnownJunction	0	3.42	24.22	4.22	29.50	19.85	9.84	7.35
6	ER2a	ExonRegion	0	81.11	81.08	103.30	99.02	69.03	63.25	49.13
7	E2a_E3a	KnownJunction	1	147.22	94.08	155.63	130.96	267.04	83.37	48.77
8	ER3a	ExonRegion	1	134.64	114.15	157.03	141.27	282.54	96.92	51.29
9	E3a_E4a	KnownJunction	1	186.79	141.16	216.23	194.54	209.94	141.37	79.65
10	ER4a	ExonRegion	1	247.58	137.24	278.72	219.64	280.26	151.00	86.07
11	E4a_E5a	KnownJunction	0	156.13	91.35	196.30	171.32	295.54	130.57	89.34
12	ER5a	ExonRegion	0	125.29	118.93	181.22	155.25	249.49	96.77	99.46
13	E5a_E6a	KnownJunction	0	69.56	76.87	124.20	107.04	193.60	71.07	98.69
14	E5a_E9a	NovelJunction	0	2.72	5.60	2.74	11.41	0.00	5.65	0.00
15	ER6a	ExonRegion	0	62.13	88.58	137.85	99.98	190.95	66.02	107.40
16	E6a_E7a	KnownJunction	1	36.93	76.24	113.38	72.63	179.70	52.50	90.93
17	E6a_E8a	NovelJunction	0	12.03	22.65	20.19	39.50	6.43	32.48	3.54
18	E6a_E9a	NovelJunction	1	0.00	3.26	3.82	14.06	0.00	1.55	0.00
19	ER7a	ExonRegion	0	54.10	80.27	115.22	64.36	208.80	39.40	95.22
20	E7a_E8a	KnownJunction	0	63.14	85.67	107.62	71.76	189.54	41.03	87.05
21	ER8a	ExonRegion	0	75.33	95.64	153.86	106.13	194.36	69.16	107.17
22	E8a_E9a	KnownJunction	0	85.85	95.60	177.07	140.95	198.92	79.54	97.67
23	ER9a	ExonRegion	0	141.25	94.90	210.28	119.76	197.44	78.41	87.83
24	E9a_E10a	KnownJunction	1	155.83	81.55	245.92	110.86	269.67	70.59	83.08
25	ER10a	ExonRegion	0	181.25	109.65	246.89	127.37	285.17	75.78	98.79
26	E10a_E11a	KnownJunction	1	226.63	117.77	234.09	139.46	282.51	84.39	98.01
27	ER11a	ExonRegion	0	210.41	132.20	257.39	174.49	342.79	121.82	176.94
28	E11a_E12a	KnownJunction	0	139.44	115.38	169.57	163.44	264.21	114.54	131.82
29	ER12a	ExonRegion	0	127.71	110.63	177.55	149.69	257.22	97.19	151.24
30	E12a_E13a	KnownJunction	0	179.02	109.37	229.84	165.45	473.60	134.45	219.87
31	E12a_E15a	NovelJunction	0	8.56	9.14	15.72	14.49	4.26	3.75	16.87
32	ER13a	ExonRegion	0	144.37	96.77	187.34	105.84	318.74	76.76	133.84
33	E13a_E14a	KnownJunction	0	33.71	14.92	50.74	28.50	85.50	8.84	28.76
34	E13a_E14b	KnownJunction	0	176.03	72.04	148.01	114.16	341.11	67.48	96.46
35	E13a_E15a	NovelJunction	0	8.81	5.86	10.98	19.37	0.95	13.29	0.53
36	ER14a	ExonRegion	0	75.50	34.93	91.79	53.31	172.90	26.97	58.52
37	ER14b	ExonRegion	0	145.89	86.72	166.20	109.57	378.73	52.90	122.66
38	E14a_E15a	KnownJunction	0	86.02	78.24	112.86	101.75	308.86	44.17	120.73
39	ER15a	ExonRegion	0	130.73	107.00	170.57	138.27	344.26	60.59	132.85
40	E15a_E16a	KnownJunction	0	148.26	89.72	208.80	144.31	392.52	56.87	138.48
41	E15a_E17a	NovelJunction	0	16.39	9.56	14.80	5.53	2.86	9.73	5.73
42	ER16a	ExonRegion	0	148.78	115.94	214.92	170.32	481.44	76.57	170.70
43	E16a_E17a	KnownJunction	0	189.05	118.80	263.83	166.23	426.92	80.53	195.55
44	E17_Aa	NovelBoundary	1	121.17	2.78	136.13	0.00	4.13	0.00	0.63
45	ER17a	ExonRegion	0	212.92	121.52	278.13	169.16	435.06	92.86	179.30
46	E17a_E18a	KnownJunction	0	207.26	106.37	248.28	131.69	452.53	86.99	187.40
47	ER18a	ExonRegion	0	160.55	93.43	216.37	126.44	391.93	58.92	155.20
48	E18a_E19a	KnownJunction	0	112.82	110.63	198.34	127.44	333.46	70.46	132.79
49	ER19a	ExonRegion	0	142.37	117.61	186.46	159.11	346.61	79.29	156.59
50	E19a_E20a	KnownJunction	0	158.42	90.64	166.71	149.00	305.31	95.73	156.90
51	ER20a	ExonRegion	0	149.11	105.79	180.13	171.31	380.72	111.13	184.59
52	E20a_E21a	KnownJunction	0	135.34	109.68	140.90	179.72	426.85	125.93	152.69
53	ER21a	ExonRegion	0	112.48	111.84	132.68	156.97	371.83	116.39	167.97
54	E21a_E22a	KnownJunction	0	86.90	104.93	111.17	150.95	332.58	90.50	136.09
55	ER22a	ExonRegion	0	86.74	156.32	137.44	177.12	352.41	110.95	166.06
56	E22a_E23a	KnownJunction	0	108.28	145.81	132.24	189.94	380.21	106.72	173.74
57	E23_Aa	NovelBoundary	1	38.49	0.00	59.03	1.57	1.18	3.08	3.81
58	ER23a	ExonRegion	0	107.49	163.67	168.53	203.17	387.28	129.22	209.62
59	E23a_E24a	KnownJunction	0	125.17	150.82	182.49	194.05	387.15	99.70	180.25
60	ER24a	ExonRegion	0	141.14	147.48	214.87	204.06	363.45	128.75	189.15
61	E24a_E25a	KnownJunction	0	136.21	139.13	201.10	185.66	343.69	137.19	157.47
62	ER25a	ExonRegion	0	78.47	76.73	110.00	104.28	205.84	73.69	94.84