Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RUVBL1	Gene	0	77.42	28.89	244.43	45.73	606.70	17.92	174.72
2	322623	Transcript	0	88.49	32.07	287.10	49.94	718.11	13.88	202.74
3	ER1a	ExonRegion	0	95.10	11.68	166.87	16.30	281.31	3.63	67.31
4	E1a_E2a	KnownJunction	1	195.07	22.88	349.60	29.01	484.87	15.14	128.65
5	ER2a	ExonRegion	0	93.79	32.26	240.14	31.65	716.13	9.64	130.44
6	E2a_E3a	KnownJunction	0	30.61	43.64	151.15	32.75	524.52	12.54	124.01
7	ER3a	ExonRegion	0	67.63	40.06	257.15	51.20	503.34	16.64	164.41
8	E3a_E4a	KnownJunction	0	94.60	42.85	350.51	45.19	598.54	14.50	199.57
9	ER4a	ExonRegion	0	105.14	41.54	391.79	58.34	706.12	20.42	229.93
10	E4a_E5a	KnownJunction	0	116.36	28.82	370.83	54.32	829.63	14.23	206.70
11	I4_AR1	ActiveIntronRegion	1	1.54	2.43	0.68	2.49	0.00	12.67	0.00
12	I4_SR2	SilentIntronRegion	1	0.65	2.53	0.23	4.71	0.13	13.93	0.16
13	E5_Aa	NovelBoundary	1	0.00	1.05	0.00	5.23	0.00	13.67	0.00
14	ER5a	ExonRegion	0	94.04	36.57	365.15	53.26	764.67	22.89	223.43
15	E5_Da	NovelBoundary	0	0.00	1.63	0.00	3.85	0.88	9.81	0.00
16	E5a_E6a	KnownJunction	0	86.59	34.89	377.72	54.45	746.68	10.56	224.20
17	I5	Intron	1	1.44	5.32	0.74	7.91	0.41	22.74	0.25
18	I5_SR1	SilentIntronRegion	1	1.48	5.57	0.70	8.20	0.43	23.59	0.26
19	E6_Aa	NovelBoundary	1	0.70	1.63	0.78	13.14	0.00	33.87	0.89
20	ER6a	ExonRegion	0	79.89	41.27	311.73	63.60	797.31	20.52	240.01
21	E6_Da	NovelBoundary	1	0.00	4.47	0.83	6.61	0.00	23.48	0.00
22	E6a_E7a	KnownJunction	1	85.52	33.21	336.24	69.98	727.76	9.25	272.01
23	I6	Intron	1	1.13	6.05	0.47	7.99	0.09	22.39	0.42
24	I6_SR1	SilentIntronRegion	1	1.13	6.07	0.47	8.01	0.09	22.44	0.43
25	E7_Aa	NovelBoundary	1	0.00	1.63	0.72	10.13	0.00	21.17	0.00
26	ER7a	ExonRegion	1	79.20	35.12	353.80	70.39	899.63	11.09	258.96
27	E7_Da	NovelBoundary	1	0.00	3.60	0.88	11.78	0.00	16.29	0.54
28	E7a_E8a	KnownJunction	1	76.91	29.53	322.69	63.37	990.21	9.30	237.03
29	I7	Intron	1	1.31	4.38	0.24	6.14	0.29	17.28	0.20
30	I7_SR1	SilentIntronRegion	1	1.33	4.44	0.25	6.21	0.30	17.54	0.20
31	ER8a	ExonRegion	0	84.45	33.09	282.21	60.42	911.92	14.84	264.93
32	E8_Da	NovelBoundary	1	1.82	1.05	0.00	3.47	3.20	15.57	2.11
33	E8a_E9a	KnownJunction	1	99.61	30.58	295.14	65.24	922.37	2.60	265.98
34	I8	Intron	1	1.43	5.06	1.00	7.73	1.73	19.25	1.03
35	I8_SR1	SilentIntronRegion	0	1.30	5.65	0.86	8.05	1.51	16.33	0.88
36	I8_AR2	ActiveIntronRegion	1	0.65	5.53	0.71	9.19	0.55	21.28	0.86
37	I8_AR3	ActiveIntronRegion	0	1.06	5.70	0.75	15.52	0.84	16.15	0.93
38	I8_SR2	SilentIntronRegion	1	1.36	4.83	0.99	7.81	1.95	18.78	0.98
39	I8_AR4	ActiveIntronRegion	1	2.80	5.74	1.21	4.83	2.20	28.73	1.59
40	I8_SR3	SilentIntronRegion	1	1.87	4.55	1.69	7.15	0.68	20.82	1.51
41	E9_Aa	NovelBoundary	1	6.98	8.35	1.97	21.86	10.12	44.73	2.95
42	ER9a	ExonRegion	0	93.99	46.45	266.05	60.64	1004.36	24.06	276.49
43	E9_Da	NovelBoundary	1	2.74	14.37	0.89	19.97	5.44	40.87	2.06
44	E9a_E10a	KnownJunction	1	79.83	27.06	239.98	41.02	874.33	6.27	215.53
45	I9	Intron	1	3.70	6.56	3.09	12.94	3.76	20.75	2.76
46	I9_SR1	SilentIntronRegion	1	2.81	7.11	2.06	14.04	3.92	25.33	2.32
47	I9_AR1	ActiveIntronRegion	0	4.09	9.25	3.17	13.73	4.25	17.69	4.27
48	I9_SR2	SilentIntronRegion	1	4.05	7.43	2.62	10.14	3.78	19.94	3.62
49	I9_AR2	ActiveIntronRegion	0	3.69	4.80	5.57	13.88	3.58	13.14	1.12
50	I9_SR3	SilentIntronRegion	1	5.60	4.63	4.85	12.39	3.26	16.35	3.40
51	E10_Aa	NovelBoundary	1	7.09	6.86	5.98	12.73	3.34	30.50	2.92
52	ER10a	ExonRegion	0	89.01	27.20	256.78	53.13	820.95	14.69	236.20
53	E10_Da	NovelBoundary	1	0.00	4.47	0.60	20.56	3.25	17.23	0.63
54	E10a_E11a	KnownJunction	0	65.24	17.86	200.90	40.12	643.52	12.94	191.77
55	I10	Intron	1	3.24	6.61	1.73	14.56	1.88	22.03	1.86
56	I10_AR1	ActiveIntronRegion	1	3.57	7.17	1.91	15.41	1.88	22.89	2.00
57	I10_AR2	ActiveIntronRegion	1	2.07	4.83	0.86	12.06	2.50	21.92	1.19
58	I10_SR1	SilentIntronRegion	1	0.00	0.82	0.40	5.59	0.95	9.35	0.89
59	E11_Aa	NovelBoundary	0	0.67	3.55	0.00	12.11	3.09	10.40	0.80
60	ER11a	ExonRegion	0	45.62	16.84	142.66	34.31	332.11	25.65	99.98
61	IG37	Intergenic	0	1.34	6.89	1.48	9.56	0.46	16.90	1.01
62	IG37_SR3	SilentIntergenicRegion	0	1.38	9.25	0.84	15.57	0.46	27.76	1.11
63	IG37_AR2	ActiveIntergenicRegion	0	3.00	7.45	3.22	11.47	0.55	29.89	1.66
64	IG37_SR2	SilentIntergenicRegion	0	1.14	6.70	1.47	7.79	0.48	13.48	0.99
65	IG37_AR1	ActiveIntergenicRegion	0	0.75	2.78	0.82	4.34	0.21	8.33	0.21
66	IG37_SR1	SilentIntergenicRegion	0	1.50	4.94	1.94	8.38	0.45	9.99	0.93