Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	STAG1	Gene	0	112.24	72.38	276.86	288.15	74.36	238.51	46.44
2	236698	Transcript	0	3.40	3.02	9.33	23.73	0.00	10.02	0.00
3	383202	Transcript	0	79.16	84.52	204.60	318.15	76.71	281.36	44.62
4	ER1a	ExonRegion	0	18.62	32.35	31.64	81.23	4.92	69.98	5.90
5	E1a_E2a	KnownJunction	0	24.95	63.97	68.78	166.69	5.14	155.06	19.79
6	I1_SR4	SilentIntronRegion	0	27.68	12.11	35.18	13.59	4.57	10.28	5.73
7	I1_AR5	ActiveIntronRegion	0	24.40	5.04	38.47	5.68	4.90	7.83	2.98
8	ER2a	ExonRegion	0	59.70	82.37	150.18	225.40	20.59	180.25	25.87
9	E2a_E3a	KnownJunction	0	50.19	79.39	113.47	220.58	28.84	186.37	29.02
10	E2a_E4a	NovelJunction	0	7.74	3.99	12.20	14.85	0.00	13.11	1.28
11	ER3a	ExonRegion	0	84.96	95.20	171.89	269.08	40.56	225.83	28.90
12	E3a_E4a	KnownJunction	0	133.37	119.77	260.55	312.12	60.91	243.45	28.10
13	ER4a	ExonRegion	0	187.64	146.26	327.60	426.80	64.50	332.23	43.57
14	E4a_E5a	KnownJunction	0	146.60	100.36	317.74	322.06	78.63	226.97	43.78
15	E4a_E6a	NovelJunction	0	15.07	15.21	26.04	14.20	2.17	13.78	1.52
16	ER5a	ExonRegion	0	141.17	91.59	323.50	317.77	73.28	224.58	43.33
17	E5_Da	NovelBoundary	1	53.37	0.00	109.06	1.49	1.11	7.05	0.89
18	E5a_E6a	KnownJunction	0	118.97	92.69	278.80	276.38	59.55	215.09	37.23
19	ER6a	ExonRegion	0	132.49	97.68	349.56	307.37	56.71	211.79	42.70
20	E6a_E7a	KnownJunction	0	129.58	106.92	344.79	324.04	59.29	211.53	49.03
21	ER7a	ExonRegion	0	98.20	80.77	311.08	303.35	50.35	222.14	41.43
22	E7a_E8a	KnownJunction	0	67.18	51.41	218.59	253.95	28.45	158.20	43.18
23	I7_AR2	ActiveIntronRegion	0	23.29	11.10	40.39	18.05	5.53	6.81	2.15
24	I7_SR3	SilentIntronRegion	0	27.25	18.88	41.93	26.67	12.26	23.17	4.46
25	I7_AR3	ActiveIntronRegion	0	21.72	17.05	35.07	40.94	10.48	31.04	4.05
26	ER8a	ExonRegion	0	99.66	73.84	296.06	271.51	53.73	195.18	43.47
27	E8a_E9a	KnownJunction	0	118.47	71.27	351.54	253.22	65.15	174.73	39.76
28	ER9a	ExonRegion	0	104.74	71.78	342.66	260.03	66.45	215.13	51.21
29	E9a_E10a	KnownJunction	0	114.56	68.46	322.41	272.56	58.74	222.30	49.07
30	ER10a	ExonRegion	0	127.63	69.11	356.64	284.30	70.27	207.61	50.78
31	E10a_E11a	KnownJunction	0	91.41	65.05	296.65	264.41	73.31	191.35	34.93
32	ER11a	ExonRegion	0	119.89	71.37	340.54	296.05	84.43	203.48	51.00
33	E11a_E12a	KnownJunction	0	136.51	87.17	331.77	323.82	72.41	219.60	53.31
34	ER12a	ExonRegion	0	90.76	87.91	274.25	322.50	64.25	239.65	47.49
35	E12a_E13a	KnownJunction	0	69.38	63.52	237.47	270.80	51.15	202.58	33.11
36	ER13a	ExonRegion	0	72.70	68.54	214.61	282.06	64.69	202.97	40.26
37	E13a_E14a	KnownJunction	0	76.91	68.23	190.78	249.59	76.26	230.93	39.30
38	ER14a	ExonRegion	0	67.81	78.06	212.84	283.02	61.39	189.72	38.82
39	E14a_E15a	KnownJunction	0	64.29	77.16	210.01	305.67	56.96	201.78	38.28
40	ER15a	ExonRegion	0	60.55	88.25	221.42	326.48	60.28	212.94	51.37
41	E15a_E16a	KnownJunction	0	68.75	81.68	261.12	315.12	62.54	229.33	48.78
42	ER16a	ExonRegion	0	89.52	80.86	264.54	319.41	63.88	213.51	47.25
43	E16a_E17a	KnownJunction	0	71.58	77.24	235.92	291.85	68.61	186.85	47.18
44	ER17a	ExonRegion	0	97.02	76.04	298.00	322.36	75.63	235.19	61.84
45	E17a_E18a	KnownJunction	0	122.85	84.25	367.64	373.86	64.41	307.45	61.32
46	ER18a	ExonRegion	0	124.54	81.27	343.92	348.07	66.96	250.35	52.27
47	E18a_E19a	KnownJunction	0	100.97	69.20	306.94	313.82	65.95	240.45	40.69
48	ER19a	ExonRegion	0	126.78	87.86	338.66	352.69	85.03	222.18	54.57
49	E19a_E20a	KnownJunction	0	126.03	89.32	344.01	385.48	87.95	250.15	47.48
50	ER20a	ExonRegion	0	127.33	89.49	359.95	377.88	102.35	259.39	58.77
51	E20a_E21a	KnownJunction	0	134.17	86.59	351.37	366.16	94.49	219.09	56.74
52	ER21a	ExonRegion	0	132.42	85.91	342.45	388.41	93.22	284.43	55.09
53	E21a_E22a	KnownJunction	0	90.53	84.52	259.90	323.03	93.62	258.54	42.22
54	ER22a	ExonRegion	0	98.53	65.00	270.52	295.15	79.16	180.72	47.55
55	E22a_E23a	KnownJunction	0	100.06	47.03	266.22	283.59	72.59	150.29	49.03
56	ER23a	ExonRegion	0	87.67	50.96	244.11	264.41	85.17	202.72	49.90
57	E23a_E24a	KnownJunction	0	73.84	50.73	213.83	222.39	78.77	176.45	49.84
58	E23a_E25a	NovelJunction	1	4.39	0.00	7.87	12.76	0.00	1.15	0.00
59	ER24a	ExonRegion	0	91.47	58.87	241.57	279.60	69.77	200.87	52.13
60	E24a_E25a	KnownJunction	0	113.49	80.89	253.94	278.52	91.96	215.07	47.05
61	ER25a	ExonRegion	0	173.04	85.43	355.07	358.25	126.72	298.32	64.28
62	E25a_E26a	KnownJunction	0	186.38	99.94	372.55	449.87	151.39	341.62	66.45
63	E25a_E27a	NovelJunction	0	0.95	1.02	4.07	5.50	0.00	10.67	0.83
64	E25a_E29a	NovelJunction	0	2.39	3.10	3.77	10.65	0.00	13.75	0.00
65	ER26a	ExonRegion	0	282.23	109.44	502.92	510.25	155.31	390.42	76.30
66	E26a_E27a	KnownJunction	0	208.91	83.41	436.76	437.77	140.16	326.74	71.26
67	E26a_E28a	NovelJunction	0	6.91	0.97	7.33	5.23	2.07	10.93	0.00
68	ER27a	ExonRegion	0	197.73	74.51	364.19	342.49	130.58	264.54	67.72
69	E27a_E28a	KnownJunction	0	128.45	55.72	295.17	286.57	109.41	308.65	55.22
70	ER28a	ExonRegion	0	164.33	71.80	341.01	352.53	119.14	322.33	65.20
71	E28a_E29a	KnownJunction	0	126.78	74.03	305.23	349.37	110.38	304.66	61.48
72	ER29a	ExonRegion	0	118.43	90.98	295.92	376.29	85.97	313.37	54.62
73	E29a_E30a	KnownJunction	0	101.27	77.66	299.08	304.61	70.13	270.95	56.32
74	ER30a	ExonRegion	0	92.39	79.61	226.86	324.29	86.54	262.55	52.85
75	E30a_E31a	KnownJunction	0	95.23	97.26	249.31	359.36	85.27	309.56	49.57
76	E30a_E32a	KnownJunction	0	3.40	3.02	9.33	23.73	0.00	10.02	0.00
77	ER31a	ExonRegion	0	76.96	84.38	195.91	305.43	75.36	268.65	45.02
78	E31a_E32a	KnownJunction	0	65.29	71.93	168.59	289.66	69.50	265.88	39.27
79	ER32a	ExonRegion	0	96.82	78.96	234.88	340.93	88.63	287.42	45.44
80	E32a_E33a	KnownJunction	0	121.04	63.63	271.97	275.27	93.53	282.76	32.86
81	ER33a	ExonRegion	0	114.66	63.29	257.09	268.57	78.44	248.92	44.87
82	E33a_E34a	KnownJunction	0	102.33	54.57	261.11	252.03	81.47	253.74	46.33
83	ER34a	ExonRegion	0	110.11	44.92	269.10	201.96	73.61	246.15	41.40
84	IG11	Intergenic	0	20.70	8.51	33.28	36.71	23.00	48.88	7.70
85	IG11_AR15	ActiveIntergenicRegion	0	73.81	35.83	164.18	149.81	62.18	181.33	32.57
86	IG11_AR14	ActiveIntergenicRegion	0	51.48	19.48	77.19	90.19	40.36	128.31	14.84
87	IG11_AR13	ActiveIntergenicRegion	0	3.39	2.01	3.91	3.06	16.51	0.37	1.48
88	IG11_SR2	SilentIntergenicRegion	0	3.57	1.28	5.85	6.47	14.77	4.44	4.21