Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PHLDB2	Gene	0	331.05	175.20	186.54	280.29	31.25	96.99	316.07
2	393934	Transcript	0	1.24	5.08	0.16	1.95	1.08	0.59	0.41
3	312791	Transcript	0	0.01	0.01	0.00	0.03	0.00	0.00	0.01
4	273356	Transcript	0	1.94	2.34	0.00	0.00	0.00	0.00	3.57
5	393923	Transcript	0	19.38	12.62	24.45	22.69	13.15	6.38	11.85
6	359729	Transcript	0	27.46	15.34	13.29	23.55	4.03	10.86	32.24
7	393925	Transcript	0	0	0	0	0	0	0	0
8	309086	Transcript	0	0.56	0.55	0.31	0.66	0.00	0.02	1.09
9	ER1a	ExonRegion	0	3.51	10.07	0.48	5.74	3.23	1.78	1.22
10	E1_Ab	KnownBoundary	0	6.21	10.01	0.00	11.97	1.01	0.00	2.16
11	ER1b	ExonRegion	0	8.14	11.97	0.00	12.29	5.90	0.58	3.10
12	E1a_E2a	KnownJunction	0	4.16	8.70	0.00	7.67	7.42	0.00	2.78
13	ER2a	ExonRegion	0	9.42	12.49	1.51	14.80	4.60	1.89	1.97
14	E2a_E3a	KnownJunction	0	5.76	7.99	0.89	12.81	1.87	1.53	5.29
15	ER3a	ExonRegion	0	3.99	10.72	0.88	9.44	2.81	1.41	2.25
16	E3a_E4a	KnownJunction	0	0.00	3.21	0.00	0.00	0.00	0.00	0.00
17	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	I3_AR3	ActiveIntronRegion	0	11.67	9.57	2.40	7.95	7.82	0.97	2.45
19	I3_SR4	SilentIntronRegion	0	18.11	10.24	1.26	11.18	9.34	2.07	2.95
20	I3_AR4	ActiveIntronRegion	0	14.54	13.12	3.13	13.56	12.31	2.37	3.68
21	I3_AR5	ActiveIntronRegion	0	13.08	8.95	2.49	6.56	10.78	1.69	3.45
22	ER4a	ExonRegion	0	0.22	1.96	0.00	0.12	0.00	0.00	0.00
23	ER5a	ExonRegion	0	0.02	0.02	0.00	0.05	0.00	0.00	0.01
24	ER5b	ExonRegion	0	1.58	2.21	0.00	0.00	0.00	0.00	2.67
25	E5b_E7c	KnownJunction	0	2.30	2.47	0.00	0.00	0.00	0.00	4.47
26	I5_AR2	ActiveIntronRegion	0	28.02	39.81	15.41	60.66	0.35	14.48	27.25
27	ER6a	ExonRegion	0	4.03	0.86	7.37	11.62	6.52	1.86	4.93
28	E6a_E7c	KnownJunction	1	16.34	1.18	36.93	40.42	31.84	13.83	21.76
29	ER7a	ExonRegion	0	3.99	2.02	2.58	1.30	0.00	0.24	3.77
30	E7_Ab	KnownBoundary	0	3.59	1.42	2.14	1.49	0.00	0.00	1.78
31	E7_Ac	KnownBoundary	0	6.04	1.26	1.95	0.00	0.00	0.00	0.00
32	ER7b	ExonRegion	0	83.76	29.16	65.03	71.08	25.92	25.75	64.09
33	ER7c	ExonRegion	0	479.34	373.35	297.51	506.54	36.14	147.45	462.89
34	E7_Da	KnownBoundary	1	47.38	57.93	36.16	31.40	0.97	2.63	9.42
35	E7a_E9a	KnownJunction	0	279.44	166.19	198.74	320.95	28.72	72.44	431.72
36	ER7d	ExonRegion	1	37.78	35.84	29.06	16.04	1.10	3.44	8.86
37	ER8a	ExonRegion	0	1.12	1.10	0.61	1.31	0.00	0.04	1.33
38	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.86
39	ER9a	ExonRegion	0	232.74	229.16	188.59	404.51	34.34	95.68	426.22
40	E9a_E10a	KnownJunction	0	127.78	122.98	134.02	179.34	24.55	38.38	275.65
41	I9_SR1	SilentIntronRegion	1	69.60	11.04	29.60	16.92	0.21	3.07	4.91
42	E10_Aa	NovelBoundary	1	64.62	34.63	37.82	145.13	0.00	30.82	5.35
43	ER10a	ExonRegion	0	378.59	188.24	238.36	329.49	41.00	86.59	390.76
44	E10a_E11a	KnownJunction	0	569.66	230.95	313.24	416.72	55.07	111.00	450.19
45	ER11a	ExonRegion	0	688.27	276.68	382.06	525.47	53.89	139.67	545.29
46	E11a_E12a	KnownJunction	0	430.62	179.14	232.01	378.46	32.09	76.83	342.49
47	E11a_E13a	KnownJunction	0	201.35	103.96	136.73	148.24	18.60	44.03	184.67
48	ER12a	ExonRegion	0	342.73	144.20	200.11	315.50	40.93	88.80	327.32
49	E12a_E13a	KnownJunction	0	231.67	139.48	143.60	256.44	43.96	79.22	274.65
50	ER13a	ExonRegion	0	367.34	235.03	270.55	347.44	39.10	117.35	471.69
51	E13a_E14a	KnownJunction	0	313.64	181.30	266.15	288.28	39.07	108.19	383.27
52	ER14a	ExonRegion	0	369.83	184.99	294.46	294.26	44.20	114.48	442.64
53	E14_Da	NovelBoundary	1	97.79	9.20	35.09	5.39	0.00	4.88	10.65
54	E14a_E15a	KnownJunction	0	300.35	165.04	281.79	279.01	41.03	114.65	414.84
55	I14	Intron	1	80.80	11.50	28.70	6.33	1.18	1.77	9.65
56	I14_SR1	SilentIntronRegion	1	83.23	5.87	35.68	4.96	1.49	0.54	8.63
57	I14_AR1	ActiveIntronRegion	1	126.09	23.75	52.12	13.64	1.15	2.49	13.92
58	I14_AR2	ActiveIntronRegion	1	137.00	21.91	42.48	11.01	2.47	4.27	19.85
59	I14_SR2	SilentIntronRegion	1	110.01	15.06	36.38	10.28	1.73	4.16	14.86
60	I14_AR4	ActiveIntronRegion	1	68.75	6.23	21.11	3.87	0.67	1.51	5.96
61	ER15a	ExonRegion	0	315.93	175.97	245.95	285.72	34.96	118.21	431.91
62	E15_Da	NovelBoundary	1	105.91	23.28	66.75	16.66	0.00	0.00	15.69
63	E15a_E16a	KnownJunction	0	382.45	172.66	244.90	272.08	65.33	86.91	469.17
64	E15a_E18a	NovelJunction	1	1.03	1.18	7.57	6.96	0.00	12.41	21.04
65	I15	Intron	1	124.12	17.16	48.71	12.12	1.82	3.31	13.52
66	I15_SR1	SilentIntronRegion	1	124.21	17.18	48.75	12.13	1.82	3.32	13.53
67	E16_Aa	NovelBoundary	1	176.51	23.99	65.60	26.52	2.17	5.65	22.16
68	ER16a	ExonRegion	0	372.35	208.92	221.56	371.29	36.34	102.73	490.88
69	E16a_E17a	KnownJunction	0	347.28	236.34	174.50	402.00	29.05	104.25	410.52
70	I16	Intron	1	78.84	9.05	37.52	12.51	0.43	3.30	5.22
71	I16_AR1	ActiveIntronRegion	1	82.80	11.55	47.19	19.34	0.49	6.48	7.29
72	I16_AR2	ActiveIntronRegion	1	124.23	20.88	45.19	50.12	0.00	19.62	10.83
73	I16_SR1	SilentIntronRegion	1	76.96	8.03	34.05	9.64	0.42	1.97	4.42
74	E17_Aa	NovelBoundary	1	173.41	21.75	53.57	13.17	2.72	4.85	3.40
75	ER17a	ExonRegion	0	500.62	277.55	298.38	492.67	57.51	139.42	735.38
76	E17_Da	NovelBoundary	1	185.24	23.12	72.90	49.25	0.00	7.83	6.54
77	E17a_E18a	KnownJunction	0	185.99	168.87	122.28	265.55	36.22	75.71	391.85
78	I17	Intron	1	243.03	40.51	94.21	103.42	1.30	31.71	11.40
79	I17_AR1	ActiveIntronRegion	1	194.96	27.47	87.73	88.63	0.52	23.31	9.78
80	I17_SR1	SilentIntronRegion	1	305.16	48.21	109.11	109.03	1.75	36.42	12.21
81	I17_AR2	ActiveIntronRegion	1	147.37	43.21	61.40	117.03	1.50	34.27	12.27
82	E18_Aa	NovelBoundary	1	136.51	55.04	69.15	134.81	1.18	46.12	15.91
83	ER18a	ExonRegion	0	278.55	217.27	165.82	344.14	44.18	115.83	461.83
84	E18a_E19a	KnownJunction	0	372.25	243.46	205.78	324.90	60.38	134.59	562.42
85	E18a_E20a	NovelJunction	0	6.99	13.03	6.04	18.83	0.00	3.40	0.00
86	I18	Intron	1	93.28	12.40	45.92	17.28	0.84	3.48	14.52
87	I18_AR1	ActiveIntronRegion	0	76.06	20.28	45.57	14.60	0.74	2.73	19.15
88	I18_SR2	SilentIntronRegion	1	116.09	12.87	55.23	18.51	1.03	3.66	15.41
89	I18_AR2	ActiveIntronRegion	1	95.91	11.96	50.53	10.76	1.08	3.93	15.81
90	I18_SR3	SilentIntronRegion	0	89.11	10.59	40.39	15.50	0.88	3.66	15.20
91	I18_AR3	ActiveIntronRegion	0	102.96	17.70	42.91	29.48	0.94	4.77	20.81
92	E19_Aa	NovelBoundary	1	224.05	49.18	94.50	68.22	0.00	16.75	35.66
93	ER19a	ExonRegion	0	503.28	256.86	256.29	460.83	50.03	157.50	507.50
94	E19a_E20a	KnownJunction	0	478.75	237.18	228.09	456.40	41.36	174.55	360.95
95	I19	Intron	1	90.54	13.93	41.70	14.74	1.00	2.87	13.29
96	I19_SR1	SilentIntronRegion	1	112.41	18.61	47.10	21.55	0.81	3.53	16.18
97	I19_AR1	ActiveIntronRegion	1	150.31	8.50	49.92	9.10	0.81	0.00	10.05
98	I19_AR2	ActiveIntronRegion	1	140.72	9.06	46.77	7.38	0.24	0.00	10.06
99	I19_AR3	ActiveIntronRegion	1	114.53	9.00	46.28	9.47	0.00	0.00	14.14
100	I19_AR4	ActiveIntronRegion	1	90.42	12.73	41.56	11.40	0.97	1.74	11.78
101	I19_AR5	ActiveIntronRegion	0	72.28	10.38	42.69	11.21	0.73	2.44	13.51
102	I19_SR3	SilentIntronRegion	0	80.07	12.87	38.75	12.66	1.32	3.05	12.23
103	ER20a	ExonRegion	0	527.14	271.97	254.49	484.52	38.75	208.89	436.71
104	E20a_E21a	KnownJunction	0	436.31	259.25	238.29	424.35	40.76	203.22	407.50
105	E20a_E22a	NovelJunction	0	1.72	12.40	3.26	9.73	0.00	5.25	7.37
106	I20_AR1	ActiveIntronRegion	1	74.10	9.03	42.73	15.05	0.32	4.56	6.90
107	ER21a	ExonRegion	0	436.40	220.27	236.89	404.46	36.60	183.32	376.62
108	E21_Da	NovelBoundary	1	90.19	16.60	42.62	14.63	0.00	6.73	17.48
109	E21a_E22a	KnownJunction	0	338.27	193.20	187.00	374.05	21.92	151.95	340.69
110	I21	Intron	1	174.84	23.04	69.98	29.03	1.14	6.31	17.97
111	I21_AR2	ActiveIntronRegion	1	165.72	23.42	75.44	32.09	0.87	7.91	16.54
112	I21_SR1	SilentIntronRegion	1	195.82	24.94	74.41	29.91	1.41	6.18	20.52
113	E22_Aa	NovelBoundary	1	159.87	20.73	51.96	14.30	1.18	8.44	16.24
114	ER22a	ExonRegion	0	439.17	226.78	227.50	397.62	45.91	163.00	464.42
115	E22_Da	NovelBoundary	1	81.61	12.95	59.32	12.87	1.18	3.75	7.67
116	E22a_E23a	KnownJunction	0	308.16	252.31	181.07	483.52	56.18	141.77	517.72
117	I22	Intron	1	83.72	7.34	50.65	17.23	0.33	2.05	7.26
118	I22_SR1	SilentIntronRegion	1	69.89	5.14	46.12	10.23	0.29	2.19	5.18
119	I22_AR1	ActiveIntronRegion	1	108.37	11.31	64.68	26.82	0.44	2.53	8.97
120	I22_AR2	ActiveIntronRegion	1	114.21	16.14	61.80	39.54	0.00	7.26	9.18
121	I22_SR2	SilentIntronRegion	1	72.08	5.35	42.98	13.00	0.29	1.57	6.86
122	E23_Aa	NovelBoundary	1	129.05	10.19	90.92	12.60	0.00	3.32	4.51
123	ER23a	ExonRegion	0	351.13	287.84	225.00	489.04	63.01	182.36	584.13
124	E23a_E24a	KnownJunction	0	492.74	303.22	303.76	537.57	44.72	211.40	718.95
125	ER24a	ExonRegion	0	600.02	172.99	284.09	310.69	52.58	138.50	435.01
126	E24_Da	KnownBoundary	0	411.97	223.41	237.56	368.38	37.90	140.03	475.24
127	ER24b	ExonRegion	0	323.95	164.27	187.52	314.75	32.51	150.02	337.02
128	E24_Db	KnownBoundary	0	125.71	78.60	69.25	136.11	14.73	65.66	151.53
129	ER24c	ExonRegion	0	50.94	28.65	24.01	45.80	8.06	21.47	60.71
130	IG46_AR1	ActiveIntergenicRegion	0	8.31	11.33	5.36	12.75	1.59	6.87	9.93