Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NFKBIZ	Gene	0	3267.19	3224.19	2123.41	1508.84	28.93	2537.04	74.91
2	394054	Transcript	1	248.78	153.07	196.19	211.97	3.80	249.40	1.44
3	326172	Transcript	0	124.37	367.30	71.56	148.46	0.00	236.13	1.40
4	326151	Transcript	0	43.41	29.74	17.66	4.66	0.00	10.75	0.60
5	IG48	Intergenic	0	4.98	2.21	10.63	1.66	20.16	2.39	17.72
6	IG48_SR2	SilentIntergenicRegion	0	2.37	0.00	4.79	1.29	15.39	0.00	7.65
7	IG48_AR3	ActiveIntergenicRegion	0	0.77	0.00	0.68	0.00	12.71	0.00	2.69
8	IG48_AR5	ActiveIntergenicRegion	0	5.85	0.29	16.92	1.39	22.71	3.31	22.98
9	IG48_AR6	ActiveIntergenicRegion	0	4.42	1.24	10.98	2.36	29.44	1.47	24.32
10	IG48_AR9	ActiveIntergenicRegion	0	10.59	14.38	4.40	2.15	0.71	6.43	0.72
11	ER1a	ExonRegion	0	260.83	217.55	175.33	284.85	3.94	342.34	1.55
12	E1a_E2a	KnownJunction	1	365.78	152.37	245.75	232.33	1.06	270.54	1.49
13	E1a_E4a	NovelJunction	1	166.25	95.50	101.99	188.20	0.00	303.40	0.00
14	ER2a	ExonRegion	0	269.62	133.94	217.65	194.99	2.12	218.49	1.84
15	E2a_E4a	KnownJunction	1	98.89	108.40	146.06	135.73	8.07	166.21	0.89
16	ER3a	ExonRegion	0	124.37	367.30	71.56	148.46	0.00	236.13	1.40
17	E3_Ab	KnownBoundary	0	13.44	368.17	16.04	102.57	0.00	189.74	1.46
18	ER3b	ExonRegion	0	304.55	1197.90	176.13	386.73	1.41	801.16	5.20
19	E3a_E4a	KnownJunction	0	1149.52	3035.66	806.66	1026.43	7.26	2016.33	22.33
20	E4_Aa	NovelBoundary	1	131.72	98.15	203.48	52.64	0.00	43.12	20.34
21	ER4a	ExonRegion	0	2616.62	5923.04	2409.13	2477.15	17.80	4801.34	67.22
22	E4a_E5a	KnownJunction	0	1975.75	5620.85	2087.56	2470.71	11.90	4861.50	57.55
23	E5a_E6a	KnownJunction	0	2281.81	5695.83	2330.35	2253.33	20.75	4279.20	59.25
24	ER5a	ExonRegion	0	2762.90	7531.76	2934.12	3071.19	20.27	5922.44	75.79
25	ER6a	ExonRegion	0	3364.35	7260.10	3213.88	3043.49	25.23	5644.74	102.72
26	E6a_E7a	KnownJunction	0	3627.36	6739.54	3257.48	2766.92	38.24	5570.71	102.71
27	ER7a	ExonRegion	0	3327.30	6424.13	3303.03	2674.77	35.55	4846.13	114.71
28	E7_Da	KnownBoundary	0	4533.89	5727.33	4044.29	2703.83	39.19	4445.04	145.66
29	E7a_E7b	KnownJunction	0	43.41	29.74	17.66	4.66	0.00	10.75	0.60
30	ER7b	ExonRegion	0	4875.39	6282.75	3759.51	2780.60	45.67	4523.35	132.59
31	E7_Ab	KnownBoundary	0	5202.57	5383.41	3360.50	2483.09	55.90	3744.78	103.87
32	ER7c	ExonRegion	0	3778.20	4586.23	2557.15	2052.46	48.05	3025.33	101.45
33	E7b_E8a	KnownJunction	0	3955.25	4776.96	2665.55	2250.43	47.10	3333.57	106.84
34	ER8a	ExonRegion	0	3612.33	4887.75	2544.97	2225.79	43.17	3160.68	115.00
35	E8a_E9a	KnownJunction	0	3577.12	4354.04	2664.30	2092.71	38.41	3021.97	102.57
36	E9_Aa	NovelBoundary	1	1212.09	54.15	989.30	24.87	0.00	13.94	9.57
37	ER9a	ExonRegion	0	3064.78	4254.07	2152.52	1991.98	43.23	2846.77	104.25
38	E9a_E10a	KnownJunction	0	2641.73	3487.01	1812.13	1745.10	25.40	2471.07	67.36
39	ER10a	ExonRegion	0	3349.53	3990.64	2388.82	1818.73	50.48	2719.11	104.64
40	E10a_E11a	KnownJunction	0	3373.24	3907.01	2262.60	1851.65	65.61	2634.98	104.32
41	ER11a	ExonRegion	0	4177.47	4135.27	2546.75	2002.37	47.01	2872.74	97.04
42	E11_Da	NovelBoundary	1	322.13	171.74	235.31	68.43	5.39	121.59	29.75
43	E11a_E12a	KnownJunction	0	4822.17	4032.74	2498.63	2032.24	43.13	2958.53	79.81
44	E11a_E13a	NovelJunction	1	300.10	198.80	120.01	131.96	1.96	291.31	14.65
45	I11	Intron	1	279.17	100.87	220.68	36.74	3.30	82.10	18.87
46	I11_AR1	ActiveIntronRegion	0	111.51	48.04	98.50	23.67	9.11	51.49	12.66
47	I11_SR1	SilentIntronRegion	1	220.43	86.34	171.16	31.37	2.02	66.36	16.40
48	I11_AR2	ActiveIntronRegion	1	338.29	117.35	267.55	41.85	3.13	95.77	21.26
49	E12_Aa	NovelBoundary	1	353.19	222.49	244.21	73.53	8.46	156.62	31.03
50	ER12a	ExonRegion	0	4991.35	4098.04	2684.83	2021.20	41.75	2862.73	81.94
51	E12a_E13a	KnownJunction	0	3829.94	3815.01	2385.92	1840.52	54.77	2725.13	67.31
52	E13_Aa	NovelBoundary	1	84.62	152.32	63.62	60.33	4.63	102.27	26.77
53	ER13a	ExonRegion	0	3568.50	3475.67	1989.39	1743.10	39.41	2408.67	89.70
54	E13a_E14a	KnownJunction	0	2961.51	3197.10	1795.99	1544.19	21.81	2215.30	68.03
55	I13	Intron	1	260.91	140.83	266.87	80.40	1.18	141.99	22.61
56	I13_AR1	ActiveIntronRegion	1	164.13	164.96	187.38	97.24	0.50	153.70	25.96
57	I13_AR3	ActiveIntronRegion	1	317.35	130.86	304.29	82.72	1.85	130.17	20.79
58	I13_SR2	SilentIntronRegion	1	284.41	160.52	279.68	78.21	1.06	151.45	24.42
59	I13_AR4	ActiveIntronRegion	1	261.05	131.31	284.18	69.64	0.97	149.98	22.58
60	E14_Aa	NovelBoundary	1	357.98	151.88	300.37	81.14	1.18	144.37	22.64
61	ER14a	ExonRegion	0	3842.05	2157.13	2168.96	1125.65	27.16	2087.26	71.99
62	IG49_SR1	SilentIntergenicRegion	0	16.48	5.86	15.85	1.13	0.00	4.03	2.42