Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ALS2CL	Gene	0	112.96	115.32	54.64	136.25	9.79	8.77	415.49
2	318962	Transcript	0	92.14	100.45	41.24	106.82	5.02	6.65	340.10
3	383742	Transcript	0	7.74	4.40	4.02	2.44	0.54	0.00	10.27
4	ER1a	ExonRegion	0	31.81	12.70	13.32	23.95	1.56	0.12	54.95
5	E1a_E2a	KnownJunction	1	84.13	32.52	34.80	65.51	4.61	0.00	153.63
6	I1	Intron	0	9.88	26.21	7.34	13.25	0.52	2.10	13.80
7	I1_AR1	ActiveIntronRegion	0	7.74	32.74	7.88	18.18	0.09	1.46	16.11
8	I1_SR1	SilentIntronRegion	0	13.14	33.08	11.31	19.68	1.07	2.54	16.45
9	I1_AR2	ActiveIntronRegion	0	10.41	31.30	10.86	16.06	0.58	2.67	13.37
10	ER2a	ExonRegion	0	50.72	60.32	24.15	53.20	3.18	5.22	148.88
11	E2a_E3a	KnownJunction	0	58.78	66.28	26.38	76.26	1.89	6.81	173.37
12	ER3a	ExonRegion	0	88.98	118.57	38.91	116.46	4.01	8.02	293.20
13	E3a_E4a	KnownJunction	0	111.12	130.36	50.96	135.10	2.07	8.66	403.99
14	E3a_E6a	NovelJunction	1	0.00	2.36	0.00	14.60	0.00	0.00	0.00
15	ER4a	ExonRegion	1	88.58	139.71	47.73	127.89	4.11	4.27	375.61
16	E4a_E5a	KnownJunction	1	87.84	149.67	43.47	109.83	2.93	1.66	357.55
17	E4a_E6a	NovelJunction	0	6.08	6.15	4.22	19.53	0.00	0.00	7.01
18	ER5a	ExonRegion	0	71.51	113.74	34.21	114.10	5.02	5.04	293.22
19	E5a_E6a	KnownJunction	0	116.78	115.52	49.89	117.49	6.94	10.51	446.48
20	ER6a	ExonRegion	0	107.81	129.19	51.24	154.93	9.50	8.82	484.96
21	E6a_E7a	KnownJunction	0	119.50	113.02	50.34	125.35	11.92	13.29	477.29
22	E6a_E8a	NovelJunction	1	2.64	4.28	1.70	25.28	0.00	0.00	2.91
23	ER7a	ExonRegion	0	108.48	133.38	46.46	154.13	7.59	10.21	498.80
24	E7a_E8a	KnownJunction	0	103.01	113.68	42.18	108.91	3.37	9.38	397.20
25	ER8a	ExonRegion	0	125.18	126.98	52.82	133.00	4.46	9.70	413.18
26	E8a_E9a	KnownJunction	1	132.13	146.44	55.83	153.39	4.31	4.02	453.37
27	ER9a	ExonRegion	0	98.34	108.79	43.93	101.25	4.01	7.30	370.24
28	E9a_E10a	KnownJunction	0	72.90	74.19	21.93	53.69	2.79	6.11	319.49
29	E9a_E11a	NovelJunction	0	21.06	48.94	24.85	68.43	2.12	3.89	60.97
30	E9a_E12a	NovelJunction	1	1.03	0.00	0.73	12.35	0.00	0.00	0.87
31	ER10a	ExonRegion	0	77.86	53.51	29.67	47.88	5.03	3.83	267.16
32	E10a_E11a	KnownJunction	1	83.77	44.16	28.11	30.40	4.10	5.15	261.09
33	ER11a	ExonRegion	0	91.20	58.63	34.92	63.35	5.37	3.62	260.20
34	E11a_E12a	KnownJunction	0	97.37	79.23	47.47	92.14	5.16	2.22	325.61
35	E12_Aa	NovelBoundary	1	23.05	43.24	10.71	15.66	1.06	1.61	27.01
36	ER12a	ExonRegion	0	95.08	121.39	48.22	132.25	4.06	8.47	383.54
37	E12a_E13a	KnownJunction	0	103.28	128.28	55.05	153.53	3.48	9.67	382.72
38	ER13a	ExonRegion	0	131.14	117.80	57.96	136.72	3.01	8.29	371.01
39	E13_Da	NovelBoundary	0	23.38	33.13	14.04	18.53	0.00	1.29	79.40
40	E13a_E14a	KnownJunction	0	95.77	78.60	47.44	109.18	6.29	7.64	366.80
41	I13	Intron	0	28.34	34.57	15.69	21.35	1.28	1.59	81.01
42	I13_AR1	ActiveIntronRegion	0	33.52	31.40	17.41	22.68	0.53	1.96	80.41
43	I13_SR2	SilentIntronRegion	1	24.99	38.12	14.75	20.92	1.92	1.33	83.76
44	ER14a	ExonRegion	0	89.87	99.86	34.56	92.18	7.45	7.64	335.04
45	E14_Da	NovelBoundary	1	39.39	31.95	14.77	9.97	2.17	3.32	86.40
46	E14a_E15a	KnownJunction	0	47.47	80.73	21.45	89.37	2.10	5.63	285.22
47	I14	Intron	0	27.45	23.39	16.39	11.95	1.90	0.93	51.86
48	I14_AR2	ActiveIntronRegion	0	33.97	26.02	20.28	13.79	2.56	1.74	56.82
49	I14_SR3	SilentIntronRegion	0	29.42	22.47	18.75	13.87	1.28	0.00	63.59
50	E15_Aa	NovelBoundary	1	25.00	27.56	15.62	4.61	1.18	0.00	44.37
51	ER15a	ExonRegion	0	83.78	99.49	38.08	113.81	6.25	9.53	360.05
52	E15a_E16a	KnownJunction	0	105.35	132.75	41.86	144.48	6.16	7.50	398.51
53	ER16a	ExonRegion	0	98.11	112.79	46.35	144.15	9.29	8.67	384.56
54	E16a_E18a	KnownJunction	0	90.86	122.06	59.91	144.29	8.69	5.87	386.27
55	ER17a	ExonRegion	0	8.53	8.79	5.52	3.42	1.07	0.00	17.38
56	E17a_E18a	KnownJunction	0	6.94	0.00	2.53	1.46	0.00	0.00	3.15
57	ER18a	ExonRegion	0	118.08	109.18	60.87	146.04	7.42	6.99	387.54
58	E18a_E19a	KnownJunction	1	108.40	90.06	62.15	140.30	5.83	2.20	332.10
59	E18a_E20a	NovelJunction	0	1.60	4.89	1.47	16.61	0.00	0.00	3.53
60	E18a_E21a	NovelJunction	0	0.00	1.63	0.00	10.27	0.00	0.00	5.96
61	E19_Aa	NovelBoundary	0	32.85	34.97	13.58	18.31	0.00	0.00	98.17
62	ER19a	ExonRegion	0	141.02	113.92	70.83	137.64	10.78	5.60	432.32
63	E19a_E20a	KnownJunction	0	192.40	121.03	83.19	164.77	6.75	6.41	537.60
64	I19	Intron	1	8.44	26.16	3.49	9.45	1.37	0.39	17.49
65	I19_SR1	SilentIntronRegion	1	8.51	26.37	3.52	9.52	1.38	0.39	17.64
66	E20_Aa	NovelBoundary	1	17.04	43.06	6.88	9.27	2.10	1.55	29.48
67	ER20a	ExonRegion	0	174.35	128.19	89.28	165.21	10.17	11.89	595.82
68	E20a_E21a	KnownJunction	0	152.08	98.78	65.20	109.07	14.18	3.14	530.51
69	I20	Intron	0	54.17	43.42	22.57	57.16	4.50	5.50	75.52
70	I20_AR1	ActiveIntronRegion	0	54.35	43.57	22.65	57.35	4.51	5.52	75.77
71	E21_Aa	NovelBoundary	0	116.25	79.68	39.82	112.40	3.97	8.60	163.11
72	ER21a	ExonRegion	0	157.99	132.35	76.95	168.12	13.83	15.07	665.94
73	E21_Da	NovelBoundary	1	98.94	64.52	38.28	42.64	4.29	2.63	68.96
74	E21a_E22a	KnownJunction	1	135.19	145.57	82.28	198.55	10.28	22.89	732.11
75	I21	Intron	0	72.60	60.26	35.49	32.39	5.34	2.89	77.95
76	I21_AR1	ActiveIntronRegion	0	72.79	60.40	35.57	32.47	5.36	2.90	78.16
77	E22_Aa	NovelBoundary	1	125.19	81.10	40.32	38.88	12.01	4.80	124.43
78	ER22a	ExonRegion	0	264.17	226.35	129.52	304.43	21.18	21.03	928.21
79	E22_Da	NovelBoundary	1	28.29	42.53	13.05	12.08	5.44	1.13	61.45
80	E22a_E23a	KnownJunction	0	285.31	189.39	123.17	254.76	28.93	15.30	882.79
81	ER23a	ExonRegion	0	263.32	196.89	118.10	255.66	25.18	12.55	926.72
82	E23a_E24a	KnownJunction	0	192.50	147.28	89.81	217.73	21.46	10.29	728.98
83	E23a_E25a	NovelJunction	0	0.00	1.52	3.64	8.80	0.00	0.00	1.61
84	E23a_E26a	NovelJunction	1	0.00	0.00	0.00	13.71	0.00	0.00	8.87
85	ER24a	ExonRegion	0	234.92	154.35	104.34	240.18	23.58	12.87	896.87
86	E24a_E25a	KnownJunction	0	255.62	140.47	100.59	219.95	24.44	14.20	870.69
87	E24a_E26a	NovelJunction	1	0.85	6.80	0.00	1.63	0.00	0.00	33.33
88	ER25a	ExonRegion	0	220.52	143.98	85.96	192.87	15.05	11.21	764.54
89	E25a_E26a	KnownJunction	0	172.49	87.51	65.04	123.26	10.60	12.33	596.26
90	E26_Aa	NovelBoundary	0	40.01	104.32	20.55	75.91	6.34	5.76	98.63
91	ER26a	ExonRegion	0	256.58	144.78	102.36	209.08	22.28	12.47	862.37
92	E26a_E27a	KnownJunction	0	173.81	163.88	82.54	244.85	13.67	18.30	669.71
93	ER27a	ExonRegion	0	101.58	123.40	54.63	145.34	12.27	9.76	397.46
94	IG4_SR2	SilentIntergenicRegion	0	5.38	10.41	1.30	6.00	0.75	0.64	3.05