Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MAP4	Gene	0	191.36	378.02	300.72	503.07	311.07	320.77	568.04
2	395730	Transcript	0	0.62	0.00	1.69	0.60	0.50	0.12	0.54
3	360240	Transcript	0	14.60	75.02	20.65	102.93	18.22	48.43	60.21
4	395734	Transcript	0	0	0	0	0	0	0	0
5	403918	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	383736	Transcript	0	13.99	13.21	18.58	16.42	16.91	12.10	29.31
7	383737	Transcript	1	9.70	91.11	32.18	155.96	47.95	111.59	24.03
8	264724	Transcript	0	0	0	0	0	0	0	0
9	320796	Transcript	0	10.13	13.82	9.40	11.49	11.64	12.30	12.46
10	335271	Transcript	0	1.36	0.00	1.28	1.58	1.46	1.02	0.61
11	ER1a	ExonRegion	0	1.24	0.00	3.25	1.20	1.00	0.00	0.95
12	E1_Ab	KnownBoundary	0	2.77	0.00	8.26	4.42	2.21	1.05	3.07
13	ER1b	ExonRegion	0	2.20	6.02	2.66	6.35	6.25	3.08	5.68
14	E1_Ac	KnownBoundary	0	42.18	84.94	32.86	72.71	69.23	57.83	122.03
15	ER1c	ExonRegion	0	52.58	239.85	61.76	318.40	87.16	166.86	186.73
16	E1a_E2a	KnownJunction	0	0.00	0.00	1.67	1.35	0.00	0.00	0.00
17	E1a_E2b	KnownJunction	0	72.10	326.19	113.81	424.00	67.80	208.02	261.55
18	ER2a	ExonRegion	0	29.20	150.03	39.63	204.50	36.44	96.85	120.41
19	ER2b	ExonRegion	0	193.89	575.86	330.05	621.13	258.29	377.28	588.15
20	E2a_E3a	KnownJunction	0	335.78	713.69	595.41	747.85	602.28	512.38	756.83
21	E2a_E5a	NovelJunction	1	29.54	76.42	60.87	101.65	40.57	71.85	34.51
22	ER3a	ExonRegion	0	351.97	794.38	638.48	851.60	545.80	601.77	916.97
23	E3a_E5a	KnownJunction	0	401.33	770.49	696.63	885.55	590.38	612.00	1016.07
24	ER4a	ExonRegion	0	0.00	0.00	0.14	0.00	0.00	0.25	0.13
25	ER5a	ExonRegion	0	539.36	998.56	928.28	1038.60	706.70	761.12	1228.76
26	E5a_E6a	KnownJunction	0	511.81	1135.35	900.33	1118.67	860.59	777.94	1325.51
27	E5a_E7a	NovelJunction	0	6.13	21.99	8.78	35.22	17.61	13.21	21.43
28	E5a_E8a	NovelJunction	0	5.04	13.79	6.51	15.28	2.19	6.81	1.63
29	E5a_E12a	NovelJunction	1	0.00	17.81	0.89	1.11	1.15	1.13	0.89
30	ER6a	ExonRegion	0	505.58	1074.86	823.51	1011.68	758.89	681.16	1261.44
31	E6_Da	NovelBoundary	1	177.06	5.33	263.83	1.33	4.29	0.00	6.95
32	E6a_E7a	KnownJunction	0	363.42	889.37	622.39	836.49	598.84	605.14	1108.29
33	E6a_E8a	NovelJunction	1	113.93	136.74	183.64	224.07	119.78	185.53	62.37
34	E6a_E12a	NovelJunction	1	0.00	61.00	3.61	15.31	5.37	28.30	2.39
35	ER7a	ExonRegion	0	319.33	733.81	561.81	778.09	694.69	474.72	1075.25
36	E7a_E8a	KnownJunction	0	342.74	577.84	480.67	696.16	519.70	442.38	989.74
37	E7a_E12a	NovelJunction	1	0.00	23.46	0.00	3.79	1.13	4.98	0.73
38	ER8a	ExonRegion	0	485.55	845.86	758.44	1042.22	778.37	556.02	1340.60
39	E8_Da	KnownBoundary	0	501.88	867.72	799.49	1079.61	823.29	567.46	1532.30
40	E8a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER8b	ExonRegion	0	517.51	782.95	803.32	1034.41	889.73	643.32	1501.57
42	E8b_E9a	KnownJunction	0	591.37	860.57	836.43	1067.44	771.05	728.87	1321.08
43	ER9a	ExonRegion	0	606.30	788.36	906.88	1021.89	868.78	669.00	1525.38
44	E9a_E12a	KnownJunction	0	510.45	661.09	775.29	875.86	693.82	705.64	1662.10
45	I9	Intron	0	34.48	31.87	65.64	72.21	9.58	33.70	23.29
46	I9_AR1	ActiveIntronRegion	0	46.32	53.42	105.21	125.69	12.01	55.27	31.20
47	I9_SR2	SilentIntronRegion	0	68.02	62.01	132.28	143.27	16.20	71.12	35.14
48	I9_AR2	ActiveIntronRegion	1	24.44	41.52	68.11	91.47	7.68	30.24	20.20
49	E10_Aa	NovelBoundary	1	45.86	40.67	144.41	131.45	11.90	67.13	33.59
50	ER10a	ExonRegion	1	71.70	80.92	166.03	173.94	17.46	98.84	38.38
51	E10a_E12a	KnownJunction	1	46.61	64.10	149.16	172.11	14.13	129.66	26.84
52	ER11a	ExonRegion	0	9.72	14.87	12.23	16.12	7.17	8.28	20.94
53	E11a_E12a	KnownJunction	0	6.39	10.67	2.70	9.62	2.33	5.55	2.12
54	ER12a	ExonRegion	0	611.55	831.44	884.99	1111.58	886.46	727.60	1627.53
55	E12_Da	KnownBoundary	0	10.46	8.12	8.16	6.10	5.26	24.44	14.98
56	E12a_E13a	KnownJunction	0	595.96	915.32	899.51	1128.89	666.18	770.31	1631.32
57	E12a_E13b	NovelJunction	0	4.77	20.39	4.96	9.27	0.00	11.31	10.15
58	ER12b	ExonRegion	0	14.26	15.92	13.26	8.75	25.41	23.08	14.32
59	E13_Aa	NovelBoundary	1	267.39	27.01	409.61	24.38	15.56	37.44	32.27
60	ER13a	ExonRegion	0	528.13	878.01	802.76	1130.18	756.62	718.86	1574.47
61	E13_Ab	KnownBoundary	0	394.43	714.43	564.12	948.95	478.65	571.00	1227.40
62	ER13b	ExonRegion	0	364.35	662.83	500.01	896.92	639.48	594.12	1233.27
63	E13a_E14a	KnownJunction	0	217.15	666.93	330.73	891.13	512.76	620.79	984.32
64	ER14a	ExonRegion	0	266.74	742.76	369.23	944.53	529.97	664.09	1079.47
65	E14a_E15a	KnownJunction	0	208.36	681.48	327.82	955.07	481.23	675.54	1057.43
66	E14a_E16a	NovelJunction	1	2.85	2.50	1.78	17.07	0.00	12.25	4.23
67	ER15a	ExonRegion	0	385.51	832.08	525.75	1099.68	577.53	805.99	1411.70
68	E15a_E16a	KnownJunction	0	475.06	850.17	606.03	1178.22	741.68	843.28	1590.52
69	ER16a	ExonRegion	0	241.19	640.77	336.43	938.47	438.67	607.13	969.39
70	E16_Ab	KnownBoundary	0	294.73	437.39	449.43	868.00	598.45	491.16	957.54
71	ER16b	ExonRegion	0	215.43	397.23	289.80	631.08	315.21	386.36	587.24
72	E16_Da	KnownBoundary	0	170.82	365.30	204.39	491.49	275.20	326.93	412.69
73	E16a_E17a	KnownJunction	0	41.14	39.64	55.01	46.54	49.84	36.29	86.45
74	E16a_E18a	KnownJunction	0	0.72	0.00	0.79	1.41	0.00	1.31	0.00
75	E16a_E19a	NovelJunction	0	1.57	30.69	6.25	18.58	19.66	24.98	11.14
76	ER16c	ExonRegion	0	169.65	338.81	237.31	505.74	251.27	339.66	493.71
77	E16b_E17a	KnownJunction	0	157.22	208.12	229.64	360.85	198.12	249.05	530.71
78	E16b_E19a	KnownJunction	0	9.70	91.11	32.18	155.96	47.95	111.59	24.03
79	ER17a	ExonRegion	0	245.05	423.09	376.95	628.64	367.49	395.21	895.61
80	E17a_E18a	KnownJunction	0	256.42	424.28	400.39	659.21	381.16	409.82	912.30
81	E17a_E19a	NovelJunction	0	1.95	10.69	2.33	4.31	10.63	9.92	2.18
82	ER17b	ExonRegion	0	0.77	0.00	0.68	2.49	0.81	0.00	1.35
83	ER18a	ExonRegion	0	293.10	596.43	482.01	766.09	463.27	512.48	1172.49
84	E18a_E19a	KnownJunction	0	335.05	647.12	506.14	863.31	471.06	532.51	1252.22
85	ER19a	ExonRegion	0	302.98	738.03	485.88	1023.82	519.60	661.68	1365.31
86	E19a_E20a	KnownJunction	0	243.41	796.55	425.71	1011.61	464.26	727.96	1168.25
87	ER20a	ExonRegion	0	232.97	647.59	393.67	890.90	532.87	628.11	1155.40
88	E20a_E22a	KnownJunction	0	222.63	491.85	371.30	788.30	599.54	584.74	1215.53
89	ER21a	ExonRegion	0	0.07	0.00	0.06	0.23	0.07	0.00	0.12
90	ER22a	ExonRegion	0	191.62	593.89	300.11	889.02	377.13	555.18	966.95
91	E22a_E23a	KnownJunction	0	239.70	830.86	362.28	1250.69	404.83	745.25	1434.00
92	ER22b	ExonRegion	0	2.00	0.00	1.76	1.75	2.92	0.74	1.21
93	ER23a	ExonRegion	0	181.60	479.79	260.51	686.77	348.46	427.87	728.03
94	E23_Da	KnownBoundary	0	255.92	355.11	346.63	672.27	603.48	404.65	885.65
95	E23a_E23b	KnownJunction	0	0.58	0.00	0.00	0.00	0.00	0.00	0.00
96	ER23b	ExonRegion	0	245.29	399.46	311.91	564.20	408.38	389.34	563.76
97	E23_Ab	KnownBoundary	0	434.76	563.92	496.08	778.79	581.16	592.52	696.09
98	ER23c	ExonRegion	0	265.70	435.85	370.18	602.92	430.51	465.14	588.14
99	E23_Db	KnownBoundary	1	91.68	211.25	227.32	397.51	266.35	309.97	424.01
100	ER23d	ExonRegion	0	68.69	283.95	138.32	461.86	227.62	345.32	354.06