Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TTLL3	Gene	0	75.27	65.53	58.56	40.96	101.17	51.58	128.43
2	397261	Transcript	0	3.27	0.91	0.38	0.31	0.46	0.00	0.21
3	287613	Transcript	0	0	0	0	0	0	0	0
4	397256	Transcript	0	2.39	0.00	1.68	1.30	1.68	2.22	2.57
5	310252	Transcript	0	14.60	9.36	5.28	2.68	5.20	9.78	19.31
6	336674	Transcript	0	6.66	5.57	0.00	0.00	0.00	5.95	10.63
7	397241	Transcript	0	0	0	0	0	0	0	0
8	383827	Transcript	0	36.41	17.31	14.72	8.71	18.80	12.07	57.29
9	287619	Transcript	0	3.92	2.80	0.28	0.54	1.70	2.09	5.23
10	ER1a	ExonRegion	0	3.27	0.91	0.38	0.31	0.46	0.00	0.21
11	ER1b	ExonRegion	0	8.99	5.89	9.05	3.05	25.63	3.67	16.39
12	E1a_E2a	KnownJunction	0	316.22	223.49	300.63	155.42	1408.51	153.03	474.00
13	ER1c	ExonRegion	0	267.49	174.82	249.55	132.80	1059.04	125.42	366.78
14	ER2a	ExonRegion	0	146.00	178.43	157.86	108.64	422.04	118.45	263.74
15	E2a_E3a	KnownJunction	1	46.88	281.87	71.06	115.11	134.44	166.64	217.15
16	E3_Aa	NovelBoundary	1	30.19	10.01	34.59	1.14	0.90	1.55	11.88
17	ER3a	ExonRegion	0	328.76	378.35	376.34	248.43	568.94	261.38	599.12
18	E3a_E4a	KnownJunction	0	349.87	412.54	431.10	272.13	1669.76	242.73	657.63
19	E3a_E5a	NovelJunction	0	5.97	22.15	11.84	8.56	27.18	20.88	8.79
20	ER4a	ExonRegion	0	394.86	461.24	515.24	289.76	1078.13	319.31	779.35
21	E4a_E5a	KnownJunction	0	345.80	535.18	543.18	315.50	549.21	350.06	863.80
22	E4a_E10a	KnownJunction	0	0.00	0.00	0.00	1.54	0.00	0.00	0.00
23	I4_AR6	ActiveIntronRegion	0	10.78	9.25	9.91	8.51	5.14	4.90	8.70
24	ER5a	ExonRegion	0	425.76	496.12	525.07	315.36	718.42	300.56	847.17
25	E5a_E6a	KnownJunction	0	341.63	327.26	434.49	202.56	715.79	184.78	614.60
26	E5a_E9a	NovelJunction	0	23.47	34.39	33.99	9.70	13.12	14.39	63.57
27	I5_SR2	SilentIntronRegion	1	13.95	13.41	6.17	3.30	13.21	0.67	19.17
28	ER6a	ExonRegion	0	208.05	203.64	190.59	156.16	374.54	141.93	343.77
29	ER7a	ExonRegion	0	0.59	0.00	0.00	0.00	0.00	0.00	0.00
30	E7a_E9a	KnownJunction	0	1.60	0.00	0.00	0.00	0.00	0.00	0.00
31	ER8a	ExonRegion	0	1.98	2.28	0.24	0.29	0.04	3.44	0.00
32	E8a_E9a	KnownJunction	1	4.87	2.52	1.34	1.68	0.00	11.28	0.72
33	E9_Aa	NovelBoundary	1	38.00	9.56	5.52	3.77	0.00	19.19	20.62
34	ER9a	ExonRegion	1	43.57	31.23	17.95	6.92	19.45	32.10	45.41
35	E9a_E10a	KnownJunction	1	62.02	40.04	19.41	10.02	20.79	47.65	66.84
36	E9a_E10b	KnownJunction	0	6.53	8.25	3.49	1.49	1.18	1.23	3.48
37	ER10a	ExonRegion	1	67.62	41.00	19.81	12.78	18.83	47.51	69.15
38	ER10b	ExonRegion	1	64.62	37.43	28.56	17.26	28.77	51.98	79.50
39	E10_Da	NovelBoundary	0	5.07	4.91	9.63	15.12	7.10	11.23	8.21
40	E10a_E11a	KnownJunction	0	47.10	34.70	22.96	21.75	30.01	43.15	87.24
41	E11_Aa	NovelBoundary	1	3.40	2.84	16.12	15.14	6.48	17.07	2.97
42	ER11a	ExonRegion	0	72.45	34.55	29.68	25.21	32.94	42.16	81.51
43	E11_Da	NovelBoundary	1	12.93	5.12	8.68	21.02	9.54	14.42	23.42
44	E11a_E12a	KnownJunction	1	23.48	12.79	7.85	2.95	8.32	19.24	41.75
45	E11a_E13a	KnownJunction	1	42.21	6.57	9.02	2.06	10.51	16.48	16.41
46	ER12a	ExonRegion	1	23.68	20.42	11.00	5.00	13.13	20.33	53.80
47	E12a_E13a	KnownJunction	1	31.71	14.69	9.36	6.66	8.58	17.85	16.83
48	I12_AR2	ActiveIntronRegion	1	8.65	2.43	5.67	4.94	2.07	1.68	26.56
49	ER13a	ExonRegion	1	82.59	19.27	23.79	8.90	27.98	34.98	56.55
50	E13_Da	NovelBoundary	1	42.69	14.06	6.78	8.78	9.98	11.28	65.11
51	E13a_E14b	KnownJunction	1	5.29	2.13	2.56	0.00	1.06	10.91	0.86
52	E13a_E14c	KnownJunction	0	4.77	0.00	3.36	1.06	3.37	4.45	5.13
53	I13	Intron	0	70.08	17.35	25.75	6.04	12.06	10.95	45.89
54	I13_AR1	ActiveIntronRegion	0	70.19	17.38	25.79	6.04	12.08	10.97	45.96
55	E14_Aa	NovelBoundary	1	43.96	13.71	13.19	1.03	6.69	3.81	11.45
56	ER14a	ExonRegion	0	39.71	19.45	17.69	11.73	20.83	19.08	37.49
57	E14_Ab	KnownBoundary	1	49.34	42.43	13.12	12.79	33.17	29.02	93.68
58	ER14b	ExonRegion	1	80.83	44.31	26.18	22.61	37.23	46.00	140.24
59	E14_Da	KnownBoundary	1	58.40	32.08	14.23	8.15	31.56	7.02	154.78
60	E14a_E14c	KnownJunction	1	35.53	23.12	13.67	20.32	8.35	51.19	25.27
61	ER14c	ExonRegion	1	33.10	15.17	11.75	5.69	16.77	5.07	77.08
62	E14_Ac	KnownBoundary	1	34.31	31.84	9.08	11.49	15.28	5.95	69.78
63	ER14d	ExonRegion	1	57.45	39.83	19.39	16.86	24.03	48.13	79.27
64	E14b_E15a	KnownJunction	1	45.81	35.10	12.29	9.27	16.76	51.70	63.53
65	ER15a	ExonRegion	1	44.96	28.76	12.09	7.50	12.78	42.20	62.11
66	E15a_E16a	KnownJunction	1	42.38	8.80	4.08	5.39	1.11	21.09	44.28
67	ER16a	ExonRegion	1	75.68	46.64	25.67	14.42	20.61	54.89	99.31
68	E16a_E17b	KnownJunction	1	54.11	42.19	18.81	12.76	13.74	37.36	71.16
69	ER17a	ExonRegion	0	2.52	3.17	0.45	0.98	5.26	0.77	12.55
70	E17_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER17b	ExonRegion	1	73.19	49.09	26.60	23.39	28.14	53.94	130.97
72	E17a_E18a	KnownJunction	1	19.73	17.97	2.24	5.66	3.11	17.98	40.76
73	E17a_E20a	KnownJunction	0	35.50	23.22	18.21	12.95	7.35	28.22	54.29
74	ER18a	ExonRegion	1	12.00	14.19	2.99	5.20	2.69	17.17	32.08
75	E18_Da	NovelBoundary	0	10.06	19.26	2.46	9.67	2.19	15.79	29.47
76	E18a_E19a	KnownJunction	0	1.95	0.00	0.00	0.00	0.00	2.73	0.00
77	E18a_E20a	KnownJunction	0	6.66	5.57	0.00	0.00	0.00	5.95	10.63
78	ER19a	ExonRegion	0	6.15	5.02	0.67	1.17	1.54	2.13	4.65
79	E19a_E20a	KnownJunction	0	5.07	2.99	0.00	0.00	0.00	2.73	3.70
80	ER20a	ExonRegion	1	72.49	44.41	25.92	15.61	19.87	70.81	90.23
81	E20_Da	KnownBoundary	1	74.75	39.49	28.08	12.35	16.23	66.41	76.56
82	E20a_E20b	KnownJunction	1	19.38	6.88	6.34	6.15	1.01	23.58	13.10
83	ER20b	ExonRegion	1	61.94	33.94	19.70	14.32	18.43	51.01	77.47
84	E20_Ab	KnownBoundary	1	54.24	35.20	9.33	18.07	11.90	47.94	76.06
85	ER20c	ExonRegion	1	35.73	28.23	10.46	13.31	10.59	43.52	50.65
86	E20_Db	KnownBoundary	0	10.68	11.77	1.47	6.47	12.68	18.55	19.65
87	ER20d	ExonRegion	0	15.63	12.84	7.01	6.38	12.28	16.32	25.61
88	E20_Dc	KnownBoundary	0	1.95	7.64	2.44	1.03	5.28	3.78	1.69
89	ER20e	ExonRegion	0	0.00	2.33	0.68	0.23	1.53	0.90	0.44