Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TTC21A	Gene	0	12.74	15.01	5.70	12.49	4.27	14.09	6.62
2	301819	Transcript	0	9.80	12.07	4.38	7.82	4.05	9.65	6.23
3	ER1a	ExonRegion	0	2.14	3.14	0.84	0.53	1.07	1.75	1.06
4	E1a_E2a	KnownJunction	0	3.34	8.96	1.38	2.63	1.11	4.88	1.65
5	ER2a	ExonRegion	0	11.43	10.59	4.48	5.87	4.19	7.10	7.55
6	E2a_E3a	KnownJunction	0	12.37	5.02	3.43	6.15	3.39	8.44	13.20
7	ER3a	ExonRegion	1	17.02	20.40	6.86	6.64	5.11	9.74	10.44
8	E3a_E4a	KnownJunction	0	18.26	20.41	5.88	7.83	5.14	7.42	9.49
9	ER4a	ExonRegion	1	13.02	19.21	4.30	6.30	5.90	10.99	9.85
10	E4a_E5a	KnownJunction	1	6.79	17.16	1.98	3.12	5.42	12.94	4.87
11	ER5a	ExonRegion	1	9.12	16.51	5.30	5.63	4.02	10.49	8.30
12	E5a_E6a	KnownJunction	1	7.61	23.99	3.52	5.12	5.26	6.30	6.79
13	E6_Aa	NovelBoundary	0	3.07	4.12	0.00	8.10	0.00	1.42	0.00
14	ER6a	ExonRegion	0	11.65	18.02	5.13	7.36	5.00	8.70	9.60
15	E6a_E7a	KnownJunction	1	19.23	18.28	5.52	8.75	3.20	3.11	8.33
16	E7_Aa	NovelBoundary	0	0.95	3.94	2.63	7.78	0.00	10.77	0.00
17	ER7a	ExonRegion	0	11.32	11.59	5.49	5.35	2.03	3.62	4.81
18	E7_Da	NovelBoundary	0	3.19	6.04	1.39	8.72	0.00	12.52	1.66
19	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER8a	ExonRegion	0	3.93	6.12	2.76	1.31	1.73	2.11	3.04
21	E8_Da	NovelBoundary	0	3.79	11.95	2.26	8.72	1.89	8.33	0.89
22	E8a_E9a	KnownJunction	0	2.37	2.42	2.53	2.98	3.30	1.15	4.97
23	I8	Intron	0	3.84	10.02	2.59	8.92	0.72	5.53	0.79
24	I8_AR1	ActiveIntronRegion	0	3.84	10.03	2.59	8.94	0.72	5.54	0.79
25	E9_Aa	NovelBoundary	0	4.92	8.51	1.41	5.20	0.00	13.59	0.66
26	ER9a	ExonRegion	0	8.97	13.35	5.32	13.71	3.10	9.06	6.29
27	E9_Da	NovelBoundary	0	2.90	13.35	2.36	7.21	0.00	11.74	0.00
28	E9a_E10a	KnownJunction	0	2.99	8.96	2.46	2.87	3.46	4.42	3.50
29	I9	Intron	0	4.79	7.46	1.88	8.91	1.02	8.57	1.81
30	I9_AR1	ActiveIntronRegion	0	4.19	7.66	1.96	9.15	1.00	7.36	2.47
31	I9_SR2	SilentIntronRegion	0	4.66	10.34	0.90	8.40	1.49	7.79	0.95
32	I9_AR3	ActiveIntronRegion	0	7.76	8.03	2.57	11.97	1.02	11.58	1.76
33	I9_SR4	SilentIntronRegion	0	4.70	4.55	2.89	8.52	0.71	11.61	2.08
34	E10_Aa	NovelBoundary	1	5.71	5.70	2.27	14.01	0.00	18.68	4.24
35	ER10a	ExonRegion	0	8.86	11.83	4.67	9.33	2.55	8.12	4.88
36	E10_Da	NovelBoundary	0	0.00	5.41	0.00	11.35	0.00	15.60	1.76
37	E10a_E11a	KnownJunction	0	3.05	9.90	8.79	1.00	2.26	7.24	6.31
38	E11_Aa	NovelBoundary	0	2.84	4.52	0.00	13.38	0.00	5.71	0.67
39	ER11a	ExonRegion	0	6.89	13.33	6.88	11.08	3.03	17.08	9.40
40	E11_Da	NovelBoundary	0	1.59	15.76	0.60	8.24	0.00	8.55	0.77
41	E11a_E12a	KnownJunction	0	5.09	1.26	4.10	1.68	2.07	1.66	3.77
42	E11a_E13a	NovelJunction	0	0.00	4.31	0.75	1.30	1.18	8.12	1.46
43	I11	Intron	0	4.34	7.28	1.82	6.55	0.66	9.50	1.42
44	I11_SR1	SilentIntronRegion	0	4.36	7.31	1.82	6.58	0.67	9.54	1.42
45	E12_Aa	NovelBoundary	1	13.67	13.00	6.71	29.64	0.00	21.98	1.50
46	ER12a	ExonRegion	0	13.41	15.00	6.10	13.35	3.64	19.09	9.81
47	E12_Da	NovelBoundary	1	13.10	14.84	4.18	28.42	1.18	33.85	0.57
48	E12a_E13a	KnownJunction	0	3.71	5.94	4.94	0.00	1.98	5.12	6.31
49	I12	Intron	0	14.83	11.00	5.18	14.97	0.48	19.54	1.45
50	I12_SR1	SilentIntronRegion	0	14.85	11.02	5.19	14.99	0.48	19.57	1.45
51	E13_Aa	NovelBoundary	1	29.72	9.41	12.21	15.96	0.00	23.82	2.15
52	ER13a	ExonRegion	0	16.24	11.87	6.32	18.26	5.04	19.14	5.55
53	E13_Da	NovelBoundary	1	9.93	5.52	4.47	8.37	0.00	22.65	0.00
54	E13a_E14a	KnownJunction	0	11.93	6.62	7.04	5.82	6.29	12.70	10.65
55	I13	Intron	0	6.70	6.44	2.63	11.59	0.00	13.05	0.00
56	I13_SR1	SilentIntronRegion	0	6.75	6.49	2.64	11.69	0.00	13.16	0.00
57	E14_Aa	NovelBoundary	0	10.13	8.67	4.31	19.83	0.00	19.62	0.00
58	ER14a	ExonRegion	0	24.73	16.26	7.15	16.94	6.61	18.40	4.64
59	E14_Da	NovelBoundary	0	12.92	12.16	3.05	23.84	0.00	12.35	1.43
60	E14a_E15a	KnownJunction	0	9.41	5.07	1.49	0.00	6.39	1.39	4.47
61	I14	Intron	0	6.12	5.97	2.82	7.47	0.59	10.63	0.73
62	I14_AR1	ActiveIntronRegion	0	6.20	6.05	2.85	7.57	0.60	10.73	0.74
63	E15_Aa	NovelBoundary	0	8.24	11.24	2.44	19.80	1.04	12.22	4.14
64	ER15a	ExonRegion	0	16.14	21.15	6.61	15.14	5.75	17.00	9.33
65	E15_Da	NovelBoundary	0	7.53	10.77	6.68	21.29	0.00	10.37	1.78
66	E15a_E16a	KnownJunction	0	7.94	13.06	5.81	5.72	8.48	6.65	12.01
67	I15	Intron	0	6.30	8.61	4.34	14.45	0.00	14.86	0.07
68	I15_SR1	SilentIntronRegion	0	6.32	8.63	4.35	14.49	0.00	14.90	0.07
69	E16_Aa	NovelBoundary	1	4.56	1.21	3.45	14.33	0.00	27.39	0.00
70	ER16a	ExonRegion	0	7.58	6.31	3.90	4.94	4.79	5.00	7.67
71	E16_Da	NovelBoundary	1	8.71	3.26	4.31	16.28	0.00	2.79	2.64
72	E16a_E17a	KnownJunction	0	3.40	1.13	2.97	0.00	3.07	1.55	2.24
73	E16a_E19a	NovelJunction	1	1.40	8.33	0.70	0.00	1.18	1.39	1.82
74	E17_Aa	NovelBoundary	0	3.69	4.89	3.97	11.97	0.00	13.72	0.89
75	ER17a	ExonRegion	0	9.99	4.44	3.42	6.00	3.39	7.27	4.39
76	E17_Da	NovelBoundary	1	5.31	7.67	1.42	18.86	0.00	5.31	0.00
77	E17a_E18a	KnownJunction	0	4.22	1.05	1.60	0.00	2.31	0.00	4.47
78	I17	Intron	1	15.01	8.60	2.14	18.80	0.97	21.72	0.75
79	I17_AR1	ActiveIntronRegion	1	15.09	8.64	2.15	18.90	0.97	21.83	0.75
80	E18_Aa	NovelBoundary	1	34.16	11.93	12.95	22.59	2.05	30.44	3.07
81	ER18a	ExonRegion	0	24.29	14.80	5.84	25.71	4.21	22.19	5.00
82	E18_Da	NovelBoundary	0	31.08	12.79	9.24	21.89	0.00	17.69	1.63
83	E18a_E19a	KnownJunction	0	10.23	10.40	4.02	1.14	5.26	4.15	7.24
84	I18	Intron	0	9.84	4.84	2.56	7.48	0.54	4.26	0.34
85	I18_SR1	SilentIntronRegion	0	10.92	5.14	2.88	9.00	0.66	4.85	0.41
86	E19_Aa	NovelBoundary	1	13.42	4.15	3.64	19.99	1.18	15.22	0.75
87	ER19a	ExonRegion	0	14.38	13.53	7.66	6.59	3.92	9.02	6.82
88	E19_Da	NovelBoundary	0	10.60	12.11	5.22	15.88	2.10	12.11	0.89
89	E19a_E20a	KnownJunction	0	8.80	5.65	1.34	2.93	5.09	4.18	4.43
90	I19	Intron	0	8.81	10.82	6.56	20.68	1.32	16.55	1.79
91	I19_SR1	SilentIntronRegion	0	8.88	12.11	5.34	14.90	1.21	11.93	1.31
92	I19_AR2	ActiveIntronRegion	1	9.49	11.34	7.30	26.05	1.39	20.06	2.23
93	I19_AR3	ActiveIntronRegion	0	6.90	8.10	7.10	12.41	0.98	14.26	1.03
94	E20_Aa	NovelBoundary	0	8.29	11.66	4.31	17.34	0.00	13.99	0.89
95	ER20a	ExonRegion	0	16.07	18.30	5.06	15.08	5.49	22.61	8.32
96	E20_Da	NovelBoundary	1	14.24	4.57	4.14	28.64	0.00	26.24	0.54
97	E20a_E21a	KnownJunction	1	10.55	17.86	2.87	4.09	2.88	3.99	6.99
98	I20	Intron	1	7.84	7.23	5.43	19.42	0.00	17.25	0.26
99	I20_SR1	SilentIntronRegion	1	7.86	7.26	5.45	19.48	0.00	17.31	0.26
100	E21_Aa	NovelBoundary	1	15.97	9.54	5.59	17.15	0.92	23.96	1.82
101	ER21a	ExonRegion	0	13.37	17.42	7.10	14.26	3.74	9.02	6.48
102	E21_Da	NovelBoundary	0	14.82	13.92	8.51	18.45	1.08	18.47	1.49
103	E21a_E22a	KnownJunction	1	5.81	13.14	0.69	3.74	6.27	0.00	3.94
104	I21	Intron	0	8.60	7.84	5.26	16.86	0.32	15.58	1.53
105	I21_AR1	ActiveIntronRegion	1	9.66	8.16	6.05	20.11	0.23	16.66	1.82
106	I21_SR1	SilentIntronRegion	0	6.25	7.16	3.48	9.51	0.54	13.25	0.89
107	E22_Aa	NovelBoundary	1	6.56	2.60	3.81	4.33	0.00	18.97	1.58
108	ER22a	ExonRegion	0	5.35	9.44	1.61	3.70	4.94	3.83	3.71
109	E22_Da	NovelBoundary	0	8.58	11.80	6.41	10.94	0.00	4.50	0.64
110	E22a_E23a	KnownJunction	0	0.00	2.63	1.41	1.63	1.13	1.47	2.25
111	I22	Intron	0	14.05	9.98	7.15	8.78	0.51	13.11	1.19
112	I22_SR1	SilentIntronRegion	0	13.08	9.44	6.38	8.88	0.34	12.12	0.82
113	I22_AR1	ActiveIntronRegion	0	17.17	11.73	9.57	8.59	1.04	16.27	2.33
114	E23_Aa	NovelBoundary	0	16.66	14.45	15.65	18.86	3.37	13.67	3.87
115	ER23a	ExonRegion	0	13.94	13.22	8.44	10.60	3.34	20.90	5.12
116	E23_Da	NovelBoundary	0	13.37	10.14	9.93	19.34	0.00	14.82	1.55
117	E23a_E24a	KnownJunction	0	7.71	8.62	2.76	2.82	4.17	10.00	3.44
118	I23	Intron	0	12.22	10.17	7.86	17.32	0.00	13.03	0.68
119	I23_SR1	SilentIntronRegion	0	12.29	10.24	7.91	17.43	0.00	13.11	0.69
120	E24_Aa	NovelBoundary	0	16.92	19.97	4.04	31.83	0.00	34.09	0.80
121	ER24a	ExonRegion	0	20.43	18.51	7.72	23.29	4.37	18.42	3.91
122	E24_Da	NovelBoundary	1	17.44	10.96	7.57	29.48	0.00	20.74	3.05
123	E24a_E25a	KnownJunction	0	7.71	6.70	1.60	1.57	2.28	5.33	2.21
124	I24	Intron	0	2.75	6.88	4.46	11.99	0.00	6.23	0.00
125	I24_SR1	SilentIntronRegion	0	2.78	6.98	4.52	12.17	0.00	6.32	0.00
126	E25_Aa	NovelBoundary	0	8.01	18.15	5.48	18.61	0.00	10.91	3.22
127	ER25a	ExonRegion	0	9.77	11.78	3.40	13.52	3.59	13.64	3.46
128	E25_Da	NovelBoundary	0	5.26	14.40	3.82	14.82	0.00	4.88	0.00
129	E25a_E26a	KnownJunction	0	3.22	7.46	1.87	0.00	2.97	3.30	4.77
130	I25	Intron	0	3.56	3.77	2.41	8.61	0.00	4.74	0.52
131	I25_SR1	SilentIntronRegion	0	3.83	4.05	2.53	9.04	0.00	5.04	0.56
132	E26_Aa	NovelBoundary	1	1.47	23.80	5.46	32.35	0.00	10.88	3.41
133	ER26a	ExonRegion	0	14.18	28.75	8.75	21.40	6.73	24.38	9.26
134	E26_Da	NovelBoundary	0	13.89	21.57	6.34	21.97	0.00	14.18	0.69
135	E26a_E27a	KnownJunction	0	9.73	19.76	4.25	11.43	4.77	18.63	9.46
136	I26	Intron	1	17.61	15.24	14.22	33.87	0.22	17.89	2.38
137	I26_SR1	SilentIntronRegion	1	17.68	15.28	14.27	33.99	0.22	17.94	2.39
138	E27_Aa	NovelBoundary	1	8.66	15.58	13.28	35.57	0.00	26.05	1.45
139	ER27a	ExonRegion	0	12.28	27.98	7.55	26.73	5.89	22.63	11.43
140	E27_Da	NovelBoundary	0	7.86	14.13	13.38	26.87	0.00	20.72	0.00
141	E27a_E28a	KnownJunction	0	8.90	20.52	1.67	13.92	3.14	14.39	5.78
142	I27	Intron	0	13.17	6.54	7.14	15.70	0.00	11.60	0.61
143	I27_SR1	SilentIntronRegion	0	13.31	6.62	7.23	15.86	0.00	11.73	0.62
144	E28_Aa	NovelBoundary	1	12.72	14.97	15.49	30.53	0.00	25.41	0.89
145	ER28a	ExonRegion	0	8.33	16.11	3.28	13.84	6.44	17.27	8.44
146	E28_Da	NovelBoundary	0	24.72	12.16	10.99	18.91	0.00	20.50	0.00
147	E28a_E29a	KnownJunction	1	8.40	6.20	4.02	9.40	7.42	19.81	9.40
148	E29_Aa	NovelBoundary	0	4.44	12.98	6.38	14.49	1.13	18.25	0.00
149	ER29a	ExonRegion	0	11.15	10.74	7.61	17.04	2.64	21.06	3.60
150	IG18	Intergenic	0	52.05	62.24	32.27	45.95	0.48	62.64	6.26
151	IG18_SR1	SilentIntergenicRegion	0	18.99	10.69	15.00	20.60	0.16	27.75	1.07
152	IG18_AR1	ActiveIntergenicRegion	0	15.21	10.28	11.87	21.98	0.20	15.18	1.64
153	IG18_AR2	ActiveIntergenicRegion	0	10.62	5.16	7.04	7.64	0.13	12.81	2.72
154	IG18_SR3	SilentIntergenicRegion	0	2.80	0.71	2.45	2.90	0.00	8.65	0.48
155	IG18_AR3	ActiveIntergenicRegion	0	85.96	93.57	55.42	68.01	0.77	102.12	9.92
156	IG18_AR4	ActiveIntergenicRegion	0	140.01	120.54	67.09	74.36	1.28	126.04	8.46
157	IG18_SR4	SilentIntergenicRegion	0	34.89	73.39	21.44	48.47	0.33	51.92	6.44