Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	THUMPD3	Gene	0	98.92	82.23	97.68	73.88	179.88	77.30	88.71
2	345094	Transcript	0	43.95	35.23	44.50	34.15	96.39	41.35	30.41
3	404270	Transcript	0	11.66	18.19	14.81	22.44	13.46	11.99	7.52
4	ER1a	ExonRegion	0	7.03	14.09	9.81	7.59	78.85	7.38	14.68
5	E1_Ab	KnownBoundary	1	55.63	50.52	49.02	29.31	219.21	21.23	93.66
6	ER1b	ExonRegion	0	14.30	38.23	18.34	24.31	51.01	27.72	26.73
7	E1_Da	KnownBoundary	0	13.64	32.42	19.72	33.27	37.37	29.40	19.28
8	E1a_E2a	KnownJunction	0	11.02	6.75	17.72	5.36	68.17	9.92	14.33
9	ER1c	ExonRegion	0	23.31	29.52	26.57	40.85	23.66	23.99	14.23
10	E1b_E2a	KnownJunction	0	0.00	6.86	3.05	4.04	3.27	0.00	0.82
11	ER2a	ExonRegion	0	51.21	78.74	71.56	42.24	140.89	38.29	89.69
12	E2a_E3a	KnownJunction	1	92.91	73.95	104.44	31.13	153.49	26.08	101.18
13	ER3a	ExonRegion	0	93.79	88.26	109.88	41.87	147.68	44.17	106.40
14	E3a_E4a	KnownJunction	0	130.80	93.21	135.80	52.12	187.24	55.21	113.43
15	ER4a	ExonRegion	0	168.49	84.52	152.33	62.93	307.53	60.81	143.27
16	E4_Da	NovelBoundary	1	2.52	4.86	3.00	17.69	0.00	28.78	0.00
17	E4a_E5a	KnownJunction	0	110.47	96.36	125.15	64.72	265.15	42.75	157.80
18	ER5a	ExonRegion	0	133.22	118.51	139.27	82.60	326.72	64.58	155.25
19	E5_Da	NovelBoundary	1	11.87	6.41	0.68	20.13	2.17	11.60	1.65
20	E5a_E6a	KnownJunction	0	117.86	113.52	117.56	68.00	287.68	58.53	142.01
21	E5a_E8a	NovelJunction	1	2.42	3.86	7.83	13.90	5.07	16.54	1.40
22	E6_Aa	NovelBoundary	1	5.92	15.95	5.65	15.66	0.00	37.98	1.42
23	ER6a	ExonRegion	1	110.08	107.90	112.76	59.43	267.19	43.44	140.74
24	E6_Da	NovelBoundary	1	10.73	20.39	17.03	21.32	3.37	39.15	3.73
25	E6a_E7a	KnownJunction	1	92.36	79.71	93.59	35.87	227.65	33.61	115.71
26	I6	Intron	1	7.38	8.34	7.39	11.70	2.49	22.96	2.45
27	I6_SR1	SilentIntronRegion	1	7.32	9.12	10.16	14.22	3.14	29.42	3.54
28	I6_AR1	ActiveIntronRegion	1	6.90	6.62	6.72	7.59	1.60	16.70	1.91
29	I6_SR2	SilentIntronRegion	1	7.84	8.93	5.06	12.36	2.52	21.29	1.74
30	E7_Aa	NovelBoundary	1	15.24	9.04	12.09	23.14	5.21	26.93	3.84
31	ER7a	ExonRegion	0	108.41	92.76	111.82	58.23	296.24	49.62	142.17
32	E7_Da	NovelBoundary	1	10.56	9.46	23.34	13.55	9.22	26.85	8.20
33	E7a_E8a	KnownJunction	1	85.50	89.48	96.15	35.35	268.22	50.01	121.33
34	I7	Intron	1	29.73	25.14	27.91	41.97	6.95	70.25	4.07
35	I7_AR2	ActiveIntronRegion	1	7.38	6.90	14.22	12.26	4.17	22.19	7.11
36	I7_SR1	SilentIntronRegion	1	2.65	1.24	3.89	10.00	0.86	21.49	0.09
37	I7_AR3	ActiveIntronRegion	1	30.06	36.89	28.49	74.86	8.57	124.24	5.35
38	I7_AR4	ActiveIntronRegion	0	11.71	17.93	16.02	25.61	2.81	30.45	1.12
39	I7_SR2	SilentIntronRegion	1	52.45	33.49	41.80	55.18	10.55	104.53	4.13
40	I7_AR5	ActiveIntronRegion	0	15.68	34.76	24.00	55.91	5.28	65.96	4.47
41	E8_Aa	NovelBoundary	1	26.52	52.49	35.65	63.31	5.12	76.51	8.47
42	ER8a	ExonRegion	0	117.58	102.63	118.15	96.02	275.87	113.13	141.97
43	E8_Da	NovelBoundary	1	34.97	42.53	31.89	91.70	11.25	78.84	6.02
44	E8a_E9a	KnownJunction	0	93.43	92.48	101.43	74.99	233.46	56.55	121.67
45	I8	Intron	1	34.04	30.14	28.01	52.48	5.88	62.12	3.09
46	I8_AR1	ActiveIntronRegion	1	47.53	45.58	36.25	73.62	6.37	96.24	5.17
47	I8_SR1	SilentIntronRegion	1	19.23	16.88	18.64	41.89	5.71	34.76	2.20
48	I8_SR2	SilentIntronRegion	1	36.90	29.14	30.41	43.25	5.82	57.33	1.92
49	E9_Aa	NovelBoundary	1	46.88	36.67	31.57	54.72	3.20	89.32	3.93
50	ER9a	ExonRegion	0	113.91	110.36	110.97	99.01	290.48	87.23	154.56
51	E9_Da	NovelBoundary	1	32.58	51.65	27.32	60.49	6.27	55.45	5.47
52	E9a_E10a	KnownJunction	0	83.27	79.00	95.48	78.10	295.21	59.68	155.01
53	I9	Intron	0	22.08	34.27	22.25	44.54	6.82	48.36	3.97
54	I9_AR1	ActiveIntronRegion	0	11.18	14.94	8.82	19.42	7.07	22.90	1.43
55	I9_SR1	SilentIntronRegion	0	27.97	44.20	28.97	57.42	7.48	61.77	5.22
56	E10_Aa	NovelBoundary	0	26.05	56.75	20.54	58.90	1.18	59.76	6.97
57	ER10a	ExonRegion	0	135.67	134.44	134.02	154.18	235.90	178.45	117.15
58	E10_Da	KnownBoundary	0	86.60	73.59	77.53	69.92	100.63	98.78	39.71
59	ER10b	ExonRegion	0	113.80	84.84	105.97	89.51	142.17	106.76	62.21
60	IG34	Intergenic	0	33.81	27.52	40.56	27.00	22.17	27.89	11.21
61	IG34_AR1	ActiveIntergenicRegion	0	65.01	50.19	64.42	52.99	48.26	70.26	26.17
62	IG34_SR1	SilentIntergenicRegion	0	123.21	46.75	93.86	77.98	29.23	85.58	18.86
63	IG34_AR2	ActiveIntergenicRegion	0	91.22	41.31	85.35	60.92	32.63	72.51	20.33
64	IG34_SR2	SilentIntergenicRegion	0	62.09	59.66	74.14	62.71	15.68	73.50	15.86
65	IG34_AR3	ActiveIntergenicRegion	0	57.83	61.48	75.37	75.02	19.24	89.78	17.04
66	IG34_SR3	SilentIntergenicRegion	0	49.30	30.45	51.56	50.96	12.83	51.93	10.11
67	IG34_SR4	SilentIntergenicRegion	0	3.66	0.00	2.64	0.00	13.91	0.00	0.00
68	IG34_AR5	ActiveIntergenicRegion	0	35.62	28.33	20.74	19.32	61.08	23.64	11.94
69	IG34_SR5	SilentIntergenicRegion	0	14.19	12.82	19.89	11.32	21.80	8.73	9.16
70	IG34_AR6	ActiveIntergenicRegion	0	21.49	12.45	26.63	8.92	14.71	5.80	6.46
71	IG34_SR6	SilentIntergenicRegion	0	15.44	14.11	27.38	7.21	12.76	6.18	5.86
72	IG34_AR7	ActiveIntergenicRegion	0	21.02	20.33	33.25	16.13	14.15	8.48	7.32