Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LRRFIP2	Gene	0	334.43	1081.63	157.81	313.71	65.76	390.56	244.55
2	354379	Transcript	0	313.09	952.12	123.02	225.15	78.00	269.05	178.13
3	336686	Transcript	0	35.43	85.10	29.08	48.91	4.02	58.82	42.74
4	396428	Transcript	0	0.38	2.13	0.68	0.00	0.00	0.00	0.67
5	IG43_SR4	SilentIntergenicRegion	0	0.80	7.87	2.90	1.42	3.43	1.26	1.29
6	IG43_AR8	ActiveIntergenicRegion	0	3.70	12.91	4.28	0.08	6.68	1.23	2.15
7	IG43_AR7	ActiveIntergenicRegion	0	3.84	9.96	3.59	1.25	7.21	1.23	2.02
8	IG43_AR5	ActiveIntergenicRegion	0	2.31	9.72	4.06	1.25	4.66	0.00	2.02
9	IG43_AR4	ActiveIntergenicRegion	0	1.18	10.01	3.99	3.54	1.55	1.23	1.72
10	IG43_AR3	ActiveIntergenicRegion	0	20.35	148.78	6.91	48.18	2.09	52.52	14.08
11	IG43_SR2	SilentIntergenicRegion	0	41.34	54.15	6.34	3.78	0.00	5.67	4.91
12	IG43_AR2	ActiveIntergenicRegion	0	58.94	61.61	11.01	5.73	0.53	7.74	6.86
13	IG43_SR1	SilentIntergenicRegion	0	33.40	36.54	6.28	3.24	0.00	3.14	4.30
14	ER1a	ExonRegion	0	148.94	429.41	40.23	118.02	36.65	114.98	72.23
15	E1a_E2a	KnownJunction	0	533.64	1808.47	186.94	514.13	90.23	638.08	312.74
16	ER1b	ExonRegion	0	361.38	1157.86	110.60	332.99	82.48	387.56	199.90
17	I1_AR1	ActiveIntronRegion	1	76.62	45.08	10.73	5.52	0.57	2.68	6.27
18	I1_SR1	SilentIntronRegion	1	67.39	44.76	12.80	3.94	0.57	1.36	6.87
19	I1_AR2	ActiveIntronRegion	1	94.17	180.23	14.55	24.98	5.02	24.28	46.10
20	I1_SR2	SilentIntronRegion	1	99.50	195.33	19.14	28.79	6.41	22.23	49.45
21	I1_AR3	ActiveIntronRegion	0	87.71	119.64	21.04	25.18	4.93	18.42	44.28
22	I1_SR3	SilentIntronRegion	1	56.12	163.34	18.57	31.51	6.37	24.12	49.40
23	I1_SR4	SilentIntronRegion	1	117.76	200.89	23.63	29.11	8.56	35.60	63.18
24	I1_AR5	ActiveIntronRegion	1	140.22	157.77	26.34	32.87	6.56	28.43	61.44
25	ER2a	ExonRegion	0	787.14	2703.57	311.69	680.33	66.56	961.86	417.19
26	E2_Da	NovelBoundary	1	148.77	173.44	37.56	29.80	0.00	11.18	26.44
27	E2a_E3a	KnownJunction	0	534.91	1884.90	237.10	490.51	56.71	688.27	354.50
28	E2a_E16a	NovelJunction	1	2.05	77.89	0.00	5.72	0.00	8.09	0.00
29	E2a_E19a	NovelJunction	1	0.80	69.51	0.00	1.68	0.00	17.74	0.00
30	I2	Intron	0	181.46	239.62	46.59	53.05	1.99	48.78	41.06
31	I2_SR1	SilentIntronRegion	1	116.46	106.79	26.23	13.19	0.91	5.24	9.58
32	I2_AR1	ActiveIntronRegion	1	122.30	97.96	33.71	12.68	0.71	7.01	13.82
33	I2_SR2	SilentIntronRegion	1	113.82	90.10	28.49	7.69	1.03	8.09	7.56
34	I2_AR2	ActiveIntronRegion	0	301.54	329.39	85.45	61.13	3.10	71.28	68.47
35	I2_AR6	ActiveIntronRegion	1	197.01	200.57	42.02	28.83	2.72	23.73	25.22
36	I2_AR7	ActiveIntronRegion	1	411.82	385.55	78.74	62.10	5.22	48.75	59.77
37	I2_AR8	ActiveIntronRegion	1	461.65	416.41	89.85	76.14	4.24	58.49	67.66
38	I2_AR9	ActiveIntronRegion	0	361.46	306.61	88.92	69.49	3.24	57.56	64.90
39	I2_SR4	SilentIntronRegion	0	202.05	401.17	56.76	96.36	3.29	75.60	69.14
40	I2_AR10	ActiveIntronRegion	0	298.71	758.39	83.82	173.08	3.29	158.02	118.76
41	I2_AR11	ActiveIntronRegion	0	198.43	490.59	47.75	118.87	2.21	142.50	62.81
42	ER3a	ExonRegion	0	475.89	1674.35	237.75	445.25	88.84	685.70	378.73
43	E3a_E4a	KnownJunction	0	0.00	1.63	0.80	0.00	0.00	1.31	1.36
44	E3a_E5a	NovelJunction	0	39.14	232.95	24.06	49.28	4.17	49.50	65.09
45	E3a_E16a	KnownJunction	0	329.43	946.17	175.17	285.92	69.99	338.91	235.54
46	E3a_E19a	NovelJunction	1	7.21	137.87	1.70	13.25	0.00	35.21	0.00
47	ER4a	ExonRegion	0	0.81	1.55	0.73	0.49	0.00	0.55	0.73
48	E4a_E5a	KnownJunction	0	0.00	1.58	0.00	1.19	0.00	2.09	0.00
49	ER5a	ExonRegion	0	18.58	104.78	10.02	25.51	2.43	24.39	25.79
50	E5a_E6a	KnownJunction	0	36.87	228.56	19.26	53.59	1.06	59.71	59.33
51	ER6a	ExonRegion	0	15.93	83.80	8.04	21.36	1.49	31.39	25.92
52	E6a_E7a	KnownJunction	0	0.00	1.63	0.79	0.00	0.00	9.49	0.00
53	E6a_E8a	NovelJunction	0	0.00	13.19	1.91	3.06	0.00	12.60	8.84
54	E6a_E16a	NovelJunction	0	22.77	138.69	12.96	19.34	0.00	27.04	38.08
55	ER7a	ExonRegion	0	0.09	2.69	0.71	2.32	0.00	10.57	0.88
56	E7a_E8a	KnownJunction	0	0.00	2.86	0.00	4.96	0.00	10.88	2.79
57	ER8a	ExonRegion	0	3.71	6.87	4.19	7.63	1.23	25.17	16.16
58	E8a_E9a	KnownJunction	1	4.94	9.67	5.06	13.98	0.00	45.67	27.90
59	ER9a	ExonRegion	0	12.20	18.53	7.29	9.49	1.62	30.32	23.91
60	E9a_E10a	KnownJunction	0	1.54	6.78	4.64	4.58	0.00	15.01	12.10
61	ER10a	ExonRegion	0	1.04	4.69	2.66	2.93	0.00	10.84	8.07
62	E10a_E11a	KnownJunction	0	0.00	2.78	0.00	1.38	0.00	4.53	0.89
63	E10a_E12a	NovelJunction	1	4.67	5.44	1.75	4.39	0.00	12.38	22.69
64	ER11a	ExonRegion	0	1.61	3.19	0.06	2.63	0.02	4.14	1.42
65	E11a_E12a	KnownJunction	0	1.03	2.78	0.00	3.03	0.00	6.49	0.89
66	ER12a	ExonRegion	0	3.84	6.58	3.68	4.91	1.32	8.86	14.81
67	E12a_E13a	KnownJunction	1	3.82	13.27	6.62	4.44	1.18	18.06	26.36
68	ER13a	ExonRegion	0	3.72	16.22	6.57	7.07	2.27	13.38	27.68
69	E13a_E14a	KnownJunction	1	2.87	19.02	5.20	8.24	0.99	13.83	28.46
70	ER14a	ExonRegion	0	12.62	10.65	2.63	5.08	1.27	6.86	19.05
71	E14a_E15a	KnownJunction	0	0.78	1.63	0.00	0.00	0.00	0.00	0.82
72	E14a_E16a	NovelJunction	1	3.69	25.38	5.29	7.23	2.21	32.91	19.55
73	ER15a	ExonRegion	0	12.32	16.60	3.96	1.21	0.94	5.88	4.95
74	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	4.31	0.00
75	ER16a	ExonRegion	0	419.70	1181.62	209.00	336.40	83.97	402.07	292.25
76	E16a_E17a	KnownJunction	0	398.04	1115.96	191.64	319.78	94.65	405.80	270.76
77	ER17a	ExonRegion	0	538.77	1692.58	254.41	454.35	95.42	551.61	385.14
78	E17a_E18a	KnownJunction	0	204.08	557.95	227.51	348.26	31.61	427.67	357.76
79	E17a_E19a	KnownJunction	1	400.06	1521.88	61.38	204.19	76.24	233.80	48.00
80	ER18a	ExonRegion	0	280.05	617.11	273.81	409.63	28.01	501.42	351.25
81	E18a_E19a	KnownJunction	0	352.27	664.80	293.99	461.33	41.17	538.41	335.66
82	ER19a	ExonRegion	0	984.56	2522.21	403.67	781.89	166.94	925.91	463.88
83	E19a_E20a	KnownJunction	0	872.30	2141.62	340.69	655.55	159.23	728.85	360.36
84	ER20a	ExonRegion	0	698.36	1966.97	305.19	536.37	152.90	696.31	441.66
85	E20_Da	NovelBoundary	1	138.69	69.86	39.79	23.52	0.90	10.02	24.48
86	E20a_E21a	KnownJunction	1	49.87	133.09	17.37	61.63	1.18	38.08	8.27
87	E20a_E23a	KnownJunction	0	482.81	1317.78	228.30	349.85	168.12	442.06	377.91
88	E20a_E24a	NovelJunction	1	37.67	173.44	25.36	71.79	1.18	86.38	12.11
89	I20	Intron	0	84.23	76.35	25.60	20.71	3.65	13.71	17.76
90	I20_SR1	SilentIntronRegion	0	106.87	87.12	27.44	23.21	5.06	15.57	21.10
91	I20_AR3	ActiveIntronRegion	0	79.33	57.06	26.53	16.71	2.52	9.96	15.53
92	I20_SR3	SilentIntronRegion	0	106.32	97.78	35.11	30.46	3.95	18.92	18.50
93	ER21a	ExonRegion	0	49.50	93.33	18.62	42.58	3.45	23.21	9.52
94	E21_Da	NovelBoundary	1	97.92	76.16	25.55	21.00	3.41	14.71	11.57
95	E21a_E22a	KnownJunction	0	1.70	5.10	2.40	5.17	0.00	0.00	0.00
96	E21a_E23a	NovelJunction	0	22.45	59.61	7.86	22.00	1.01	16.46	10.56
97	I21	Intron	0	106.97	134.94	35.47	38.07	5.83	24.62	25.93
98	I21_AR1	ActiveIntronRegion	1	92.12	73.83	22.95	30.43	3.19	15.83	9.72
99	I21_SR1	SilentIntronRegion	0	97.25	152.40	34.31	46.27	4.31	24.15	26.15
100	I21_AR4	ActiveIntronRegion	0	118.64	146.59	39.11	39.19	7.34	27.82	29.13
101	E22_Aa	NovelBoundary	1	224.96	280.34	53.27	92.65	11.64	59.23	39.57
102	ER22a	ExonRegion	1	66.73	126.02	23.87	64.08	7.84	25.57	12.58
103	E22_Da	NovelBoundary	1	107.98	326.71	40.71	74.04	13.83	50.25	40.59
104	E22a_E23a	KnownJunction	0	26.69	42.59	9.08	35.38	3.73	23.07	5.04
105	I22	Intron	0	75.41	214.25	32.93	51.42	7.77	33.44	31.31
106	I22_AR1	ActiveIntronRegion	0	75.92	215.67	33.15	51.75	7.82	33.68	31.51
107	E23_Aa	NovelBoundary	1	99.79	301.81	34.09	78.02	7.98	46.44	41.62
108	ER23a	ExonRegion	0	485.20	1700.26	208.37	484.22	127.30	536.19	370.11
109	E23a_E24a	KnownJunction	0	412.79	1836.58	210.48	511.62	124.39	566.06	439.97
110	E24_Aa	NovelBoundary	1	277.47	68.10	117.99	12.30	6.22	22.51	8.33
111	ER24a	ExonRegion	0	603.08	2430.37	297.22	650.86	136.70	750.56	540.11
112	E24a_E25a	KnownJunction	0	702.65	2472.19	327.60	681.83	130.29	818.71	482.61
113	ER25a	ExonRegion	0	660.37	2374.96	297.55	677.66	139.74	784.23	514.99
114	E25a_E27a	KnownJunction	0	551.85	1759.79	272.79	552.17	122.80	622.75	453.47
115	E25a_E28a	NovelJunction	0	33.41	125.84	7.27	50.06	0.00	57.19	0.00
116	ER26a	ExonRegion	0	0.38	2.13	0.68	0.00	0.00	0.00	0.67
117	ER27a	ExonRegion	0	571.85	2130.72	297.84	640.28	133.92	721.67	522.52
118	E27a_E28a	KnownJunction	0	497.61	2230.73	266.18	626.86	147.65	672.59	493.14
119	ER28a	ExonRegion	0	493.23	2244.99	252.54	640.32	137.52	755.97	513.55
120	E28a_E29a	KnownJunction	0	620.25	2363.56	277.97	652.62	157.38	741.66	528.99
121	ER29a	ExonRegion	0	406.26	1591.02	201.86	441.79	111.87	591.46	383.80
122	E29_Da	KnownBoundary	0	265.50	844.39	153.25	282.72	80.13	347.27	231.14
123	ER29b	ExonRegion	0	204.24	545.36	110.03	167.76	39.02	215.49	156.97
124	IG42	Intergenic	0	14.42	16.63	8.32	8.44	3.67	8.94	7.49
125	IG42_AR4	ActiveIntergenicRegion	0	15.22	22.28	8.90	9.24	4.71	15.42	10.73
126	IG42_SR4	SilentIntergenicRegion	0	20.12	8.37	7.60	9.65	1.92	9.76	5.95
127	IG42_AR3	ActiveIntergenicRegion	0	18.19	6.07	5.42	7.69	0.54	3.06	3.49
128	IG42_SR3	SilentIntergenicRegion	0	11.63	7.10	6.08	9.04	2.67	3.13	3.36
129	IG42_AR2	ActiveIntergenicRegion	0	19.71	20.08	10.94	10.60	4.31	7.90	8.82
130	IG42_AR1	ActiveIntergenicRegion	0	0.77	8.50	2.71	0.83	2.43	2.45	0.67
131	IG42_SR1	SilentIntergenicRegion	0	4.11	9.36	3.46	3.78	1.62	5.72	3.31