Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GIGYF2	Gene	0	83.02	81.67	113.97	162.82	111.46	136.98	81.23
2	373563	Transcript	0	0	0	0	0	0	0	0
3	373566	Transcript	0	0	0	0	0	0	0	0
4	409480	Transcript	0	0	0	0	0	0	0	0
5	409547	Transcript	0	22.85	27.74	25.96	14.88	12.61	14.24	22.94
6	409196	Transcript	0	18.72	14.63	20.87	36.80	25.58	32.09	9.82
7	409451	Transcript	0	2.84	0.00	4.11	4.98	0.00	0.00	0.57
8	410033	Transcript	0	0.12	0.47	0.32	0.10	0.04	0.00	0.37
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E1_Ad	KnownBoundary	0	0.00	0.00	1.48	0.00	0.90	0.00	0.00
11	ER1b	ExonRegion	0	1.61	3.99	5.06	10.15	0.39	3.33	1.54
12	E1_Ae	KnownBoundary	0	7.31	14.55	24.36	28.91	10.95	25.54	11.26
13	ER1c	ExonRegion	0	4.61	9.55	16.16	19.95	6.71	15.06	7.23
14	ER1d	ExonRegion	0	12.20	17.01	30.99	31.33	22.07	32.18	14.93
15	ER1e	ExonRegion	0	86.30	86.73	145.30	143.92	161.60	144.08	103.78
16	E1a_E2a	KnownJunction	1	21.31	12.43	55.64	32.75	45.62	31.95	61.25
17	E1a_E3a	KnownJunction	0	86.45	78.89	119.20	104.73	72.73	118.48	82.03
18	E1a_E4a	NovelJunction	0	4.12	3.02	3.32	9.59	1.84	6.51	5.89
19	E1a_E5a	KnownJunction	0	19.08	28.19	29.32	55.35	35.18	56.74	15.28
20	ER2a	ExonRegion	1	10.56	10.07	25.67	17.97	19.64	17.46	32.71
21	E2a_E3a	KnownJunction	0	1.84	11.17	6.16	15.69	3.20	15.41	1.92
22	ER3a	ExonRegion	0	50.13	55.70	79.44	82.38	24.98	84.56	53.60
23	E3a_E4a	KnownJunction	1	7.38	18.55	13.41	9.86	1.18	1.26	12.73
24	E3a_E5a	KnownJunction	0	19.16	33.36	43.10	68.78	10.81	59.44	31.73
25	ER4a	ExonRegion	0	25.14	28.55	26.40	16.42	15.58	13.70	22.14
26	E4a_E5a	KnownJunction	0	36.03	36.12	38.08	18.34	21.07	27.76	33.95
27	E5_Aa	NovelBoundary	1	31.26	1.21	34.49	0.00	0.95	0.00	4.61
28	ER5a	ExonRegion	0	72.76	84.39	122.59	172.85	79.35	173.26	89.85
29	E5a_E6a	KnownJunction	0	79.46	83.91	142.45	181.32	83.61	176.42	87.56
30	I5_AR2	ActiveIntronRegion	0	11.01	20.71	19.30	16.98	8.47	17.81	13.84
31	ER6a	ExonRegion	0	91.03	102.33	149.22	216.02	99.01	169.12	95.54
32	E6a_E7a	KnownJunction	0	91.91	109.71	160.56	211.93	107.40	141.37	115.24
33	ER7a	ExonRegion	0	73.67	101.45	115.35	183.90	80.23	151.61	88.60
34	E7a_E8a	KnownJunction	0	69.70	79.79	106.79	167.91	75.43	119.42	63.53
35	E7a_E9a	NovelJunction	0	2.97	5.10	6.25	8.83	0.00	10.40	0.00
36	ER8a	ExonRegion	0	88.06	95.78	112.84	187.59	79.36	137.26	71.20
37	E8a_E9a	KnownJunction	0	91.51	106.95	113.81	182.73	104.87	137.83	77.82
38	ER9a	ExonRegion	0	149.64	128.81	146.24	240.70	152.42	171.11	77.24
39	E9a_E10a	KnownJunction	0	145.09	120.45	136.23	233.09	195.56	182.61	74.95
40	ER10a	ExonRegion	1	220.92	141.07	200.09	286.28	262.83	227.05	104.55
41	E10a_E11a	KnownJunction	0	0.85	0.00	2.96	0.00	1.18	0.00	0.89
42	E10a_E12a	KnownJunction	1	243.09	134.46	199.39	270.83	336.32	215.18	102.91
43	ER11a	ExonRegion	0	0.85	1.05	2.24	1.57	2.42	0.06	3.04
44	E11a_E12a	KnownJunction	0	1.65	4.76	0.89	3.79	1.18	0.00	4.27
45	ER12a	ExonRegion	1	227.35	152.91	179.89	311.27	206.86	239.10	100.11
46	E12a_E14a	KnownJunction	0	141.36	115.25	106.12	196.82	213.38	131.24	74.08
47	E12a_E14b	KnownJunction	1	18.36	1.08	12.42	18.26	15.98	7.45	4.37
48	ER13a	ExonRegion	0	0.25	0.95	0.64	0.20	0.08	0.00	0.74
49	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E14_Ab	NovelBoundary	0	84.95	68.28	64.78	127.76	101.87	84.23	32.89
51	ER14a	ExonRegion	1	126.23	111.00	94.37	188.16	180.30	133.96	62.42
52	ER14b	ExonRegion	0	175.63	139.31	170.74	282.77	180.74	197.80	105.07
53	E14a_E15a	KnownJunction	1	227.72	187.63	247.04	377.49	132.85	268.40	114.58
54	ER15a	ExonRegion	0	175.01	145.56	205.73	306.83	156.92	211.35	119.40
55	E15a_E16a	KnownJunction	0	142.23	143.97	212.26	276.00	168.84	207.86	117.66
56	E15a_E16b	KnownJunction	0	2.84	0.00	4.11	4.98	0.00	0.00	0.57
57	E16_Ab	NovelBoundary	1	48.10	1.21	72.93	0.00	0.00	0.00	0.89
58	ER16a	ExonRegion	0	139.28	147.61	209.65	273.40	163.99	201.98	116.03
59	ER16b	ExonRegion	0	102.79	150.14	181.24	273.99	118.10	183.41	113.35
60	E16_Da	KnownBoundary	0	78.19	136.06	155.11	283.67	93.11	204.32	120.60
61	ER16c	ExonRegion	0	95.57	137.73	171.45	266.57	129.68	195.25	132.50
62	E16b_E17a	KnownJunction	0	97.59	111.02	173.15	226.02	153.26	145.25	122.55
63	ER17a	ExonRegion	0	93.93	124.41	169.48	286.77	150.32	169.64	134.28
64	E17a_E18a	KnownJunction	0	106.92	143.84	210.11	342.27	159.25	247.60	151.43
65	ER18a	ExonRegion	0	123.51	152.18	209.51	344.79	157.58	214.29	146.32
66	E18a_E19a	KnownJunction	0	109.97	135.90	208.03	305.75	169.28	210.24	122.45
67	ER19a	ExonRegion	0	104.98	132.81	172.70	261.04	127.04	190.54	121.07
68	E19a_E20a	KnownJunction	0	73.99	94.71	138.03	202.83	45.28	172.51	93.17
69	ER20a	ExonRegion	0	98.60	122.28	163.90	244.04	150.18	164.12	143.84
70	E20a_E21a	KnownJunction	0	95.55	111.39	169.74	255.93	236.75	205.15	144.39
71	ER21a	ExonRegion	0	116.92	136.33	185.89	315.85	188.97	216.05	187.08
72	E21a_E22a	KnownJunction	0	101.22	155.74	173.92	338.64	136.73	225.49	174.63
73	E21a_E23a	NovelJunction	0	7.74	3.78	6.05	17.01	0.00	10.85	0.56
74	ER22a	ExonRegion	0	99.64	162.77	176.82	324.53	166.16	216.37	176.47
75	E22a_E23a	KnownJunction	0	117.25	148.54	173.54	292.31	181.03	173.90	183.86
76	E23_Aa	NovelBoundary	1	53.64	1.00	65.10	1.68	1.91	0.00	3.74
77	ER23a	ExonRegion	0	102.88	176.53	161.71	314.48	194.07	242.47	171.85
78	E23a_E24a	KnownJunction	0	88.46	178.59	157.69	306.73	154.13	248.01	134.41
79	ER24a	ExonRegion	0	123.03	183.14	190.83	316.07	148.38	255.25	151.19
80	E24a_E25a	KnownJunction	0	113.14	158.02	174.74	265.55	134.77	220.96	118.45
81	ER25a	ExonRegion	0	142.86	159.15	191.11	285.87	152.76	226.99	131.48
82	E25a_E26a	KnownJunction	0	142.63	154.92	201.49	323.14	133.89	234.71	130.89
83	ER26a	ExonRegion	0	97.86	126.41	142.10	231.52	127.30	188.17	103.21
84	E26a_E27a	KnownJunction	0	72.17	151.77	125.75	251.81	118.54	230.08	101.32
85	ER27a	ExonRegion	0	78.47	135.38	137.53	261.52	145.43	233.04	116.39
86	E27a_E28a	KnownJunction	0	77.57	125.95	132.25	276.98	96.25	245.30	104.59
87	ER28a	ExonRegion	0	82.39	125.92	161.46	266.81	148.97	228.58	123.67
88	E28a_E29a	KnownJunction	0	107.08	112.44	190.03	272.89	175.18	227.72	133.60
89	ER29a	ExonRegion	0	125.06	127.74	223.14	243.65	159.94	209.63	132.33
90	E29a_E30a	KnownJunction	0	155.63	103.98	270.08	205.87	198.85	248.84	134.84
91	E29a_E31a	NovelJunction	1	4.17	4.07	6.45	17.80	1.84	30.04	0.00
92	ER30a	ExonRegion	0	163.05	123.10	255.06	243.90	184.96	272.23	142.19
93	E30a_E31a	KnownJunction	0	164.71	130.20	226.92	289.87	165.08	306.86	138.46
94	ER31a	ExonRegion	0	98.95	87.19	117.54	182.82	115.69	175.78	81.12
95	E31a_E32a	KnownJunction	0	117.15	81.13	90.42	156.56	167.27	146.19	77.19
96	ER32a	ExonRegion	1	282.85	125.94	225.67	263.67	307.39	203.28	131.33
97	E32a_E33a	KnownJunction	1	374.04	164.41	307.67	342.08	350.08	278.74	177.57
98	ER33a	ExonRegion	0	100.18	79.33	141.52	170.14	146.38	173.27	96.51
99	E33_Da	KnownBoundary	0	6.64	4.73	12.79	7.96	33.77	18.04	13.16
100	E33_Db	KnownBoundary	0	8.68	8.17	17.03	20.43	26.51	23.96	16.94
101	ER33b	ExonRegion	1	11.77	9.59	21.43	23.36	44.20	34.26	22.94
102	ER33c	ExonRegion	0	11.04	13.76	13.34	19.94	36.95	23.90	17.47