Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 NHEJ1 Gene 0 22.07 19.46 41.52 18.69 73.52 16.53 35.44 2 318673 Transcript 0 0.29 0.14 0.62 0.09 0.13 0.08 0.40 3 356853 Transcript 0 28.07 19.33 29.49 10.95 73.47 13.63 31.82 4 409720 Transcript 0 0.85 0.00 1.48 0.70 2.84 0.00 0.41 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER4a ExonRegion 0 0.66 0.00 0.00 0.00 0.00 0.00 0.00 12 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER5a ExonRegion 0 2.40 1.78 7.53 1.83 0.60 0.68 2.85 14 E5_Da NovelBoundary 0 12.70 3.91 25.87 10.38 2.35 1.53 10.65 15 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER6a ExonRegion 0 0.47 0.00 0.28 0.00 0.63 0.00 0.00 17 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E7a_E8a KnownJunction 0 1.75 0.00 3.02 0.00 0.00 0.00 0.00 20 E8_Aa NovelBoundary 1 2.00 5.70 12.83 2.87 1.18 2.81 6.46 21 ER8a ExonRegion 0 0.00 0.16 0.38 0.00 0.00 0.00 0.00 22 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER9a ExonRegion 0 0.30 0.77 0.74 0.00 0.00 0.86 1.22 24 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER10a ExonRegion 0 0.29 0.00 0.39 0.00 0.19 0.11 1.82 26 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 1.18 0.00 2.08 27 E11_Aa NovelBoundary 1 14.85 1.44 29.90 2.47 79.79 5.07 4.50 28 ER11a ExonRegion 0 23.97 12.79 27.16 9.31 123.32 9.52 28.67 29 E11a_E12a KnownJunction 0 32.18 25.88 31.82 12.60 23.61 17.74 34.97 30 ER12a ExonRegion 0 37.73 37.39 54.99 24.48 70.95 25.29 46.70 31 E12a_E13a KnownJunction 0 43.51 39.67 78.88 34.00 256.42 30.15 60.28 32 ER13a ExonRegion 0 43.18 55.73 76.54 39.84 137.11 34.67 63.28 33 E13a_E14a KnownJunction 0 38.70 53.38 77.70 42.29 138.78 51.70 54.62 34 ER14a ExonRegion 0 41.32 46.59 79.76 38.34 144.63 40.03 65.94 35 E14a_E15a KnownJunction 0 42.94 55.62 90.56 32.43 203.58 34.95 78.18 36 ER15a ExonRegion 0 61.98 49.23 117.08 35.61 168.09 33.77 77.24 37 E15a_E16a KnownJunction 0 63.49 44.40 125.24 41.72 115.01 42.18 78.31 38 ER16a ExonRegion 0 41.59 51.05 87.97 45.97 132.73 32.43 70.86 39 E16a_E17a KnownJunction 0 36.68 37.17 83.78 36.33 130.43 20.50 54.73 40 ER17a ExonRegion 0 42.67 46.16 95.48 47.26 142.85 28.24 68.59 41 E17a_E18a KnownJunction 0 30.78 37.52 57.02 27.52 108.76 24.79 66.83 42 E17a_E18b KnownJunction 0 0.00 0.00 1.38 1.41 2.26 0.00 0.00 43 ER18a ExonRegion 0 27.80 35.45 63.06 28.79 113.97 27.08 62.43 44 ER18b ExonRegion 0 38.90 32.79 84.14 39.33 138.78 37.85 75.34 45 E18_Da KnownBoundary 0 47.50 27.11 90.25 39.07 113.97 41.08 73.42 46 ER18c ExonRegion 0 30.59 16.44 50.81 20.69 114.93 18.01 48.47 47 ER18d ExonRegion 0 1.71 0.00 1.58 0.00 3.42 0.00 0.82 48 IG19 Intergenic 0 3.94 1.97 10.38 2.58 12.76 2.14 6.93 49 IG19_SR6 SilentIntergenicRegion 0 7.63 3.41 18.69 3.04 31.21 2.70 10.72 50 IG19_AR8 ActiveIntergenicRegion 0 6.91 3.50 14.96 4.89 18.81 2.40 11.47 51 IG19_SR5 SilentIntergenicRegion 0 3.97 7.29 11.29 4.57 16.87 3.68 9.78 52 IG19_AR7 ActiveIntergenicRegion 0 5.78 4.92 11.61 5.30 14.24 4.33 9.98 53 IG19_AR6 ActiveIntergenicRegion 0 11.42 5.90 21.65 6.86 35.30 2.67 17.65 54 IG19_SR4 SilentIntergenicRegion 0 6.62 2.58 20.25 5.14 23.03 3.75 12.66 55 IG19_AR5 ActiveIntergenicRegion 0 6.32 1.45 9.85 4.22 14.30 0.24 6.33 56 IG19_AR4 ActiveIntergenicRegion 0 4.90 2.57 13.61 1.62 22.18 2.19 9.82 57 IG19_AR3 ActiveIntergenicRegion 0 7.44 5.22 21.02 5.12 26.14 7.19 15.70