Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 SPAG16 Gene 0 7.82 4.11 5.91 2.68 17.88 2.91 9.27 2 331683 Transcript 0 0.31 0.28 0.50 0.00 0.25 0.05 0.00 3 374309 Transcript 0 0.22 0.89 0.68 1.86 0.30 1.12 0.10 4 272898 Transcript 0 2.47 0.40 2.41 0.31 3.71 0.49 2.76 5 406979 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.83 0.00 0.00 0.52 0.15 0.00 7 ER1b ExonRegion 0 7.18 6.95 2.68 7.94 36.76 5.59 12.39 8 E1_Ac KnownBoundary 0 19.89 16.26 9.73 20.26 141.36 6.97 38.81 9 ER1c ExonRegion 0 12.06 18.07 5.73 12.28 53.66 6.55 25.82 10 E1_Da KnownBoundary 0 0.00 1.47 0.00 1.68 0.00 3.00 0.00 11 E1a_E2a KnownJunction 0 12.15 20.15 4.84 12.95 21.16 5.41 21.27 12 ER1d ExonRegion 0 0.90 1.88 1.10 5.90 0.39 1.28 0.40 13 E1b_E3a KnownJunction 0 0.00 1.50 1.38 1.54 0.00 3.22 0.00 14 ER2a ExonRegion 0 32.29 39.70 14.23 15.52 55.36 11.50 50.42 15 E2a_E3a KnownJunction 0 45.71 43.27 19.70 17.04 89.68 16.48 63.34 16 ER3a ExonRegion 0 50.72 51.02 23.29 23.69 109.03 19.62 70.58 17 ER3b ExonRegion 0 63.68 46.72 33.73 26.68 231.60 31.53 74.35 18 E3a_E4a KnownJunction 0 64.39 39.56 40.32 14.66 151.87 29.85 64.78 19 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER4a ExonRegion 0 66.84 39.82 35.79 21.81 129.19 35.19 71.46 21 E4a_E5a KnownJunction 0 58.53 38.62 32.42 16.44 126.10 33.34 54.27 22 ER5a ExonRegion 0 42.39 26.05 30.42 18.79 113.78 18.43 50.81 23 E5_Da NovelBoundary 0 22.61 21.78 16.09 13.68 112.82 16.72 46.98 24 E5a_E6a KnownJunction 0 8.23 3.26 11.86 4.80 17.29 0.00 8.50 25 I5_AR1 ActiveIntronRegion 0 36.17 17.58 17.34 12.82 71.19 13.74 36.79 26 ER6a ExonRegion 0 6.50 4.72 8.84 1.85 18.75 0.86 8.59 27 E6a_E7a KnownJunction 0 5.22 5.36 5.16 0.00 21.16 0.00 8.30 28 ER7a ExonRegion 0 4.84 2.48 4.60 1.38 13.92 1.75 5.72 29 E7a_E8a KnownJunction 0 3.52 2.15 2.04 1.35 18.95 5.47 2.49 30 ER8a ExonRegion 0 5.29 2.59 5.04 0.98 14.23 2.38 4.64 31 E8a_E10a KnownJunction 0 7.86 1.26 4.53 1.68 12.33 0.00 5.93 32 ER8b ExonRegion 0 0.00 0.20 0.23 0.00 0.81 0.00 0.00 33 ER9a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER10a ExonRegion 0 4.34 0.76 4.34 1.02 8.28 0.19 3.45 35 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E10a_E12a KnownJunction 0 0.58 1.44 1.21 1.54 0.00 1.29 0.00 37 ER11a ExonRegion 0 4.94 0.79 4.82 0.62 7.43 0.98 5.52 38 ER12a ExonRegion 0 0.48 0.44 1.26 0.96 0.97 0.57 0.00 39 E12a_E13a KnownJunction 0 0.00 1.39 0.00 0.00 0.00 0.00 0.00 40 ER13a ExonRegion 0 0.00 0.45 0.24 0.00 0.57 0.00 0.00 41 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER14a ExonRegion 0 0.00 0.00 0.00 0.00 0.13 0.00 0.00 43 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 1.18 0.00 0.00 44 ER15a ExonRegion 0 0.14 0.00 0.68 0.00 0.89 0.00 0.00 45 E15a_E16a KnownJunction 0 0.90 0.00 0.00 0.00 1.13 0.00 0.00 46 ER16a ExonRegion 0 0.62 0.00 0.44 0.00 0.40 0.00 0.00 47 E16a_E17a KnownJunction 0 0.00 0.00 1.51 0.00 0.00 0.00 0.00 48 ER17a ExonRegion 0 0.34 0.00 0.67 0.00 0.98 0.00 0.00 49 E17a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E17a_E20a KnownJunction 0 0.83 0.00 0.68 0.00 0.00 0.00 0.00 51 ER18a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER19a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER20a ExonRegion 0 0.08 0.00 0.82 0.00 0.23 0.00 0.00